Wall clock time and date at job start Tue Mar 31 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 5 5 C 1.34779 * 119.99741 * 275.00368 * 4 2 1 6 6 O 1.21279 * 120.00369 * 359.97438 * 5 4 2 7 7 C 1.50708 * 119.99762 * 179.97438 * 5 4 2 8 8 S 1.81002 * 109.47063 * 179.97438 * 7 5 4 9 9 C 1.76200 * 99.99762 * 180.02562 * 8 7 5 10 10 H 1.08004 * 120.00163 * 0.02562 * 9 8 7 11 11 C 1.38804 * 119.99866 * 179.97438 * 9 8 7 12 12 N 1.31626 * 119.99636 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99882 * 0.02562 * 11 9 8 14 14 H 1.48508 * 109.46802 * 90.00013 * 13 11 9 15 15 H 1.48491 * 109.47033 * 209.99869 * 13 11 9 16 16 H 1.48502 * 109.47294 * 330.00283 * 13 11 9 17 17 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 18 18 C 1.38281 * 119.97421 * 279.72908 * 17 2 1 19 19 C 1.38247 * 120.11051 * 179.72382 * 18 17 2 20 20 C 1.38161 * 120.05350 * 0.54998 * 19 18 17 21 21 C 1.38706 * 119.95049 * 359.72498 * 20 19 18 22 22 O 1.35897 * 120.06199 * 179.97438 * 21 20 19 23 23 C 1.38121 * 119.96920 * 100.00017 * 17 2 1 24 24 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 27 27 H 0.96997 * 120.00110 * 94.99637 * 4 2 1 28 28 H 1.08994 * 109.47136 * 300.00021 * 7 5 4 29 29 H 1.09002 * 109.46457 * 59.99935 * 7 5 4 30 30 H 0.97003 * 119.99513 * 180.02562 * 12 11 9 31 31 H 1.08001 * 119.94699 * 359.97438 * 18 17 2 32 32 H 1.08000 * 119.97254 * 180.25137 * 19 18 17 33 33 H 1.08011 * 120.02719 * 179.70070 * 20 19 18 34 34 H 0.96703 * 113.99432 * 270.02217 * 22 21 20 35 35 H 1.08001 * 120.03084 * 0.02674 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8589 1.1586 2.4115 7 6 2.6488 -0.7288 3.5878 8 16 2.7104 0.4345 4.9732 9 6 3.3134 -0.6308 6.2405 10 1 3.5228 -1.6672 6.0206 11 6 3.5205 -0.1376 7.5214 12 7 3.9715 -0.9333 8.4680 13 14 3.1591 1.6552 7.9017 14 1 1.7484 1.7925 8.3450 15 1 4.0650 2.1247 8.9806 16 1 3.3764 2.4736 6.6817 17 6 2.0324 -0.7105 -1.2304 18 6 2.0719 -2.0923 -1.2625 19 6 2.5268 -2.7471 -2.3919 20 6 2.9540 -2.0216 -3.4874 21 6 2.9208 -0.6353 -3.4556 22 8 3.3409 0.0805 -4.5317 23 6 2.4583 0.0193 -2.3230 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.2490 -1.6317 1.1527 28 1 1.9759 -1.5505 3.8326 29 1 3.6479 -1.1213 3.3987 30 1 4.1158 -0.5888 9.3632 31 1 1.7429 -2.6612 -0.4054 32 1 2.5529 -3.8265 -2.4161 33 1 3.3139 -2.5336 -4.3677 34 1 4.2827 0.2995 -4.5150 35 1 2.4318 1.0987 -2.2956 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277335545.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:44 Heat of formation + Delta-G solvation = -61.139639 kcal Electronic energy + Delta-G solvation = -18643.923099 eV Core-core repulsion = 15540.117269 eV Total energy + Delta-G solvation = -3103.805830 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.41754 -39.24274 -37.33494 -35.15850 -32.45181 -32.09846 -30.39783 -29.54199 -28.52821 -25.62719 -24.16005 -23.06290 -21.41910 -20.26143 -18.59804 -17.82637 -16.88855 -16.61245 -16.08845 -15.58450 -15.28325 -15.11187 -14.96181 -14.31369 -13.90432 -13.76573 -13.55839 -13.22532 -12.80462 -12.66352 -12.46908 -12.16244 -12.01065 -11.83137 -11.42213 -11.27567 -11.01625 -10.76642 -10.59867 -9.86968 -9.57902 -9.25897 -9.06135 -9.00440 -8.91479 -8.51386 -6.92960 -6.29938 -4.01728 0.87264 0.96064 2.73684 2.93916 3.18650 3.32123 3.38203 3.49836 3.65087 3.85132 4.31688 4.32493 4.54599 4.71556 4.76769 4.91360 5.06106 5.09040 5.10360 5.21714 5.31398 5.45139 5.55052 5.63135 5.74695 5.79345 5.99607 6.01090 6.05586 6.10432 6.16271 6.43581 6.54886 7.29307 7.56746 7.93189 8.40620 8.45555 9.16270 10.79345 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.035467 B = 0.003180 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.271353 B = 8801.926848 C = 9024.047076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.183 3.817 3 H 0.097 0.903 4 N -0.732 5.732 5 C 0.533 3.467 6 O -0.518 6.518 7 C -0.124 4.124 8 S -0.141 6.141 9 C -0.522 4.522 10 H 0.088 0.912 11 C 0.095 3.905 12 N -0.881 5.881 13 Si 0.857 3.143 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.235 1.235 17 C -0.069 4.069 18 C -0.123 4.123 19 C -0.099 4.099 20 C -0.148 4.148 21 C 0.107 3.893 22 O -0.500 6.500 23 C -0.133 4.133 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.398 0.602 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.271 0.729 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.391 0.609 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.593 -3.028 -23.960 24.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.078 3.922 3 H 0.115 0.885 4 N -0.387 5.387 5 C 0.319 3.681 6 O -0.392 6.392 7 C -0.275 4.275 8 S 0.085 5.915 9 C -0.669 4.669 10 H 0.106 0.894 11 C -0.113 4.113 12 N -0.517 5.517 13 Si 0.682 3.318 14 H -0.192 1.192 15 H -0.199 1.199 16 H -0.159 1.159 17 C -0.070 4.070 18 C -0.141 4.141 19 C -0.117 4.117 20 C -0.166 4.166 21 C 0.063 3.937 22 O -0.311 6.311 23 C -0.152 4.152 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.234 0.766 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.248 0.752 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.601 -1.118 -23.840 24.136 hybrid contribution 0.893 -1.232 0.421 1.579 sum -2.708 -2.350 -23.418 23.691 Atomic orbital electron populations 1.22174 0.94032 1.02504 1.02953 1.19744 0.94334 0.96849 0.81244 0.88455 1.46136 1.69295 1.14045 1.09203 1.20293 0.76808 0.87234 0.83769 1.90697 1.48411 1.15686 1.84436 1.23287 1.04515 1.03492 0.96217 1.84787 1.87164 1.16460 1.03049 1.22321 1.50596 0.98701 0.95306 0.89387 1.24716 0.93347 0.98305 0.94950 1.69939 1.43431 1.35808 1.02541 0.86732 0.79320 0.85213 0.80568 1.19197 1.19941 1.15909 1.19861 0.98183 0.93832 0.95127 1.21001 1.00654 0.93739 0.98709 1.21029 0.97870 1.00104 0.92664 1.21448 1.02434 0.93365 0.99383 1.18424 0.99013 0.89728 0.86566 1.84820 1.30609 1.74147 1.41476 1.21294 1.00976 1.00744 0.92221 0.91620 0.92239 0.91128 0.76625 0.88450 0.88445 0.91930 0.85583 0.85316 0.85423 0.75248 0.85068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.46 37.16 0.35 -1.34 16 2 C 0.18 2.09 2.78 -69.08 -0.19 1.90 16 3 H 0.10 1.26 7.44 -51.93 -0.39 0.88 16 4 N -0.73 -9.20 5.03 -54.93 -0.28 -9.47 16 5 C 0.53 9.24 7.81 -10.98 -0.09 9.16 16 6 O -0.52 -10.88 15.52 5.56 0.09 -10.80 16 7 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 8 S -0.14 -3.54 18.55 -107.50 -1.99 -5.54 16 9 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 10 H 0.09 2.63 8.03 -52.48 -0.42 2.20 16 11 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 12 N -0.88 -26.52 13.97 55.49 0.78 -25.74 16 13 Si 0.86 21.71 27.74 -169.99 -4.72 17.00 16 14 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 17 C -0.07 -0.68 4.95 -104.65 -0.52 -1.20 16 18 C -0.12 -1.04 9.06 -39.56 -0.36 -1.40 16 19 C -0.10 -0.76 10.04 -39.61 -0.40 -1.16 16 20 C -0.15 -1.20 9.99 -39.44 -0.39 -1.60 16 21 C 0.11 0.97 6.70 -39.22 -0.26 0.71 16 22 O -0.50 -4.06 13.50 -19.42 -0.26 -4.33 16 23 C -0.13 -1.28 9.61 -39.43 -0.38 -1.66 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.40 3.96 6.85 -40.82 -0.28 3.68 16 28 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 29 H 0.10 1.73 8.14 -51.91 -0.42 1.30 16 30 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.13 0.89 6.89 -52.49 -0.36 0.53 16 32 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 34 H 0.39 1.37 9.06 45.56 0.41 1.78 16 35 H 0.13 1.17 8.04 -52.49 -0.42 0.75 16 LS Contribution 318.81 15.07 4.80 4.80 Total: -1.00 -34.78 318.81 -6.95 -41.74 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -3.57 Total: 3.03 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -1.80 Total: -10.69 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.50 Total: -35.22 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.18 Total: -15.12 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.72 Total: 17.00 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.78 -6.95 -41.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277335545.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.404 kcal (2) G-P(sol) polarization free energy of solvation -34.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds