Wall clock time and date at job start Tue Mar 31 2020 05:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47284 * 2 1 4 4 N 1.46497 * 109.47366 * 179.97438 * 3 2 1 5 5 C 1.36970 * 120.00476 * 265.74172 * 4 3 2 6 6 H 1.08000 * 120.00274 * 137.94635 * 5 4 3 7 7 C 1.38975 * 119.99544 * 317.95434 * 5 4 3 8 8 N 1.31418 * 119.99873 * 163.22852 * 7 5 4 9 9 Si 1.86799 * 120.00317 * 343.22154 * 7 5 4 10 10 H 1.48498 * 109.47084 * 95.29274 * 9 7 5 11 11 H 1.48499 * 109.47708 * 215.29691 * 9 7 5 12 12 H 1.48503 * 109.47155 * 335.29844 * 9 7 5 13 13 C 1.34784 * 119.99625 * 85.73907 * 4 3 2 14 14 O 1.21641 * 120.00151 * 3.27501 * 13 4 3 15 15 C 1.47296 * 119.99543 * 183.27470 * 13 4 3 16 16 C 1.36836 * 122.90620 * 335.37788 * 15 13 4 17 17 S 1.70555 * 110.75096 * 179.75242 * 16 15 13 18 18 C 1.75687 * 91.92449 * 0.35486 * 17 16 15 19 19 C 1.41455 * 125.12189 * 179.90714 * 18 17 16 20 20 C 1.50692 * 120.00208 * 359.69868 * 19 18 17 21 21 O 1.21424 * 119.99829 * 179.70241 * 19 18 17 22 22 C 1.36386 * 109.74821 * 359.65093 * 18 17 16 23 23 H 1.08994 * 109.47215 * 300.00152 * 1 2 3 24 24 H 1.08997 * 109.46793 * 59.99983 * 1 2 3 25 25 H 1.09004 * 109.46745 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47274 * 239.99421 * 2 1 3 27 27 H 1.09000 * 109.47262 * 119.99829 * 2 1 3 28 28 H 1.09002 * 109.46876 * 60.00033 * 3 2 1 29 29 H 1.09000 * 109.46832 * 300.00093 * 3 2 1 30 30 H 0.96999 * 119.99579 * 179.97438 * 8 7 5 31 31 H 1.08004 * 124.62186 * 0.03447 * 16 15 13 32 32 H 1.09004 * 109.47094 * 89.99902 * 20 19 18 33 33 H 1.09001 * 109.47376 * 330.00486 * 20 19 18 34 34 H 1.09000 * 109.47124 * 209.99867 * 20 19 18 35 35 H 1.08007 * 123.30953 * 180.25882 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1895 1.5308 1.1838 6 1 5.0609 0.9150 1.3508 7 6 3.7624 2.4126 2.1693 8 7 4.1921 2.2765 3.4038 9 14 2.5780 3.7916 1.7394 10 1 1.1877 3.3589 2.0310 11 1 2.9024 4.9935 2.5491 12 1 2.7021 4.1188 0.2962 13 6 4.1794 1.3556 -1.1632 14 8 3.5730 1.3373 -2.2175 15 6 5.6505 1.2829 -1.1581 16 6 6.4155 1.7717 -0.1343 17 16 8.0734 1.5190 -0.4447 18 6 7.7283 0.7506 -1.9864 19 6 8.7015 0.2418 -2.8781 20 6 10.1651 0.3445 -2.5346 21 8 8.3575 -0.2777 -3.9202 22 6 6.3804 0.7135 -2.1914 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.8943 2.8922 4.0916 31 1 6.0227 2.2482 0.7518 32 1 10.4717 -0.5433 -1.9814 33 1 10.3333 1.2302 -1.9219 34 1 10.7491 0.4209 -3.4517 35 1 5.9259 0.2831 -3.0716 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293790202.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:21 Heat of formation + Delta-G solvation = -34.530734 kcal Electronic energy + Delta-G solvation = -19790.022909 eV Core-core repulsion = 16687.370927 eV Total energy + Delta-G solvation = -3102.651982 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.65548 -39.00511 -36.40023 -35.29878 -33.19427 -31.85171 -31.10140 -28.84978 -26.07186 -25.58119 -24.33902 -22.10041 -20.97542 -19.34347 -18.67401 -17.75222 -16.58738 -16.23475 -15.56572 -15.00649 -14.94886 -14.56758 -14.35880 -14.01473 -13.81717 -13.37311 -12.81862 -12.70768 -12.43868 -12.31483 -12.26547 -11.94520 -11.88164 -11.69948 -11.56211 -11.06033 -10.99722 -10.79384 -10.46214 -10.15257 -9.89987 -9.73792 -9.38188 -8.79980 -8.45908 -8.18349 -7.88655 -6.68783 -4.34612 0.65818 1.85121 2.14047 2.26243 2.92253 3.04169 3.11502 3.18038 3.93157 4.03628 4.20313 4.45706 4.79119 5.10041 5.37636 5.45534 5.49817 5.55566 5.66734 5.73455 5.84908 5.93455 5.95546 6.02181 6.23248 6.29157 6.35734 6.37308 6.63729 6.68359 6.75824 6.81433 7.20956 7.68705 7.85007 8.01298 8.71735 9.13839 9.49914 10.38227 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.020466 B = 0.005958 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.769766 B = 4698.431531 C = 5629.430725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.104 3.896 4 N -0.458 5.458 5 C -0.352 4.352 6 H 0.112 0.888 7 C 0.067 3.933 8 N -0.854 5.854 9 Si 0.878 3.122 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.258 1.258 13 C 0.541 3.459 14 O -0.590 6.590 15 C -0.161 4.161 16 C -0.144 4.144 17 S 0.193 5.807 18 C -0.344 4.344 19 C 0.427 3.573 20 C -0.199 4.199 21 O -0.472 6.472 22 C 0.013 3.987 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.279 0.721 31 H 0.217 0.783 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.714 -0.488 -2.419 6.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.019 4.019 4 N -0.177 5.177 5 C -0.480 4.480 6 H 0.129 0.871 7 C -0.142 4.142 8 N -0.488 5.488 9 Si 0.705 3.295 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.182 1.182 13 C 0.329 3.671 14 O -0.475 6.475 15 C -0.175 4.175 16 C -0.283 4.283 17 S 0.461 5.539 18 C -0.461 4.461 19 C 0.307 3.693 20 C -0.257 4.257 21 O -0.351 6.351 22 C -0.021 4.021 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.233 0.767 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.581 -0.355 -2.438 7.027 hybrid contribution -2.012 0.444 -0.394 2.098 sum 4.569 0.090 -2.833 5.376 Atomic orbital electron populations 1.21704 0.96194 1.01184 1.01433 1.21778 0.94980 0.97762 1.02565 1.21674 0.82110 0.96863 1.01213 1.43555 1.04102 1.64403 1.05659 1.19256 1.14593 1.23100 0.91019 0.87057 1.25405 0.96938 0.97214 0.94603 1.69717 1.42885 1.35976 1.00257 0.86864 0.80889 0.81716 0.80053 1.19734 1.21175 1.18233 1.17678 0.85694 0.80053 0.83654 1.90660 1.69648 1.55963 1.31258 1.19112 0.95703 1.06986 0.95689 1.27925 0.96178 1.00154 1.04071 1.82743 1.06375 1.52748 1.12070 1.23721 0.98464 1.19702 1.04170 1.20068 0.90437 0.74724 0.84063 1.22236 0.94842 1.04337 1.04245 1.90580 1.84363 1.35763 1.24407 1.20882 0.91091 0.92411 0.97703 0.92978 0.92937 0.92931 0.91907 0.91299 0.91477 0.91309 0.91063 0.76670 0.88552 0.89999 0.89434 0.83009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 37.16 0.37 -1.89 16 2 C -0.13 -2.50 6.23 -26.73 -0.17 -2.66 16 3 C 0.10 2.23 3.98 -4.04 -0.02 2.21 16 4 N -0.46 -10.61 2.12 -116.07 -0.25 -10.86 16 5 C -0.35 -8.35 6.74 -14.98 -0.10 -8.45 16 6 H 0.11 2.73 6.13 -52.49 -0.32 2.41 16 7 C 0.07 1.62 5.34 -17.46 -0.09 1.53 16 8 N -0.85 -21.37 13.96 55.50 0.77 -20.59 16 9 Si 0.88 19.20 24.88 -169.99 -4.23 14.97 16 10 H -0.27 -5.74 6.76 56.52 0.38 -5.36 16 11 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.26 -5.85 7.10 56.52 0.40 -5.45 16 13 C 0.54 12.70 7.50 -12.57 -0.09 12.61 16 14 O -0.59 -15.01 16.49 5.24 0.09 -14.92 16 15 C -0.16 -3.32 5.58 -106.54 -0.59 -3.91 16 16 C -0.14 -2.67 8.74 30.22 0.26 -2.41 16 17 S 0.19 2.77 21.79 -107.50 -2.34 0.43 16 18 C -0.34 -5.63 6.19 -39.02 -0.24 -5.87 16 19 C 0.43 6.47 7.05 -33.09 -0.23 6.24 16 20 C -0.20 -2.06 9.94 36.00 0.36 -1.70 16 21 O -0.47 -8.68 17.44 5.43 0.09 -8.59 16 22 C 0.01 0.24 9.53 -40.07 -0.38 -0.14 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.07 1.44 3.69 -51.93 -0.19 1.25 16 29 H 0.07 1.48 7.51 -51.93 -0.39 1.09 16 30 H 0.28 6.56 8.31 -40.82 -0.34 6.22 16 31 H 0.22 4.32 5.28 -52.48 -0.28 4.04 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.73 7.25 -51.93 -0.38 0.35 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.15 2.99 8.00 -52.48 -0.42 2.57 16 LS Contribution 307.54 15.07 4.63 4.63 Total: -1.00 -28.27 307.54 -6.25 -34.51 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -4.09 Total: 4.85 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -0.93 Total: -4.43 kcal Atomic # 7 Polarization: -31.98 SS G_CDS: 0.53 Total: -31.45 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: 0.18 Total: -23.51 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.23 Total: 14.97 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -2.34 Total: 0.43 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.27 -6.25 -34.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293790202.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.016 kcal (2) G-P(sol) polarization free energy of solvation -28.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds