Wall clock time and date at job start Tue Mar 31 2020 06:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.47028 * 2 1 4 4 C 1.46507 * 119.99775 * 82.21195 * 3 2 1 5 5 C 1.50707 * 109.46818 * 89.99914 * 4 3 2 6 6 H 1.08003 * 120.00038 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99865 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99954 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00013 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47143 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47034 * 119.99918 * 9 7 5 12 12 H 1.48494 * 109.47021 * 239.99877 * 9 7 5 13 13 C 1.34772 * 120.00241 * 262.20945 * 3 2 1 14 14 O 1.21616 * 120.00259 * 184.65172 * 13 3 2 15 15 C 1.47377 * 119.99848 * 4.66067 * 13 3 2 16 16 C 1.36769 * 122.89621 * 21.75248 * 15 13 3 17 17 S 1.70556 * 110.75680 * 179.97438 * 16 15 13 18 18 C 1.75693 * 91.91791 * 0.02562 * 17 16 15 19 19 C 1.41448 * 125.13218 * 179.97438 * 18 17 16 20 20 C 1.50698 * 120.00119 * 0.02562 * 19 18 17 21 21 O 1.21416 * 119.99720 * 180.02562 * 19 18 17 22 22 C 1.36398 * 109.73200 * 359.77223 * 18 17 16 23 23 H 1.08997 * 109.46738 * 59.99962 * 1 2 3 24 24 H 1.08993 * 109.47020 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47044 * 300.00138 * 1 2 3 26 26 H 1.09003 * 109.47156 * 120.00103 * 2 1 3 27 27 H 1.08999 * 109.47304 * 240.00598 * 2 1 3 28 28 H 1.08999 * 109.46978 * 209.99546 * 4 3 2 29 29 H 1.08996 * 109.47080 * 330.00045 * 4 3 2 30 30 H 0.96992 * 119.99959 * 179.97438 * 8 7 5 31 31 H 1.08001 * 124.62033 * 359.97438 * 16 15 13 32 32 H 1.09005 * 109.46917 * 0.02562 * 20 19 18 33 33 H 1.08994 * 109.47312 * 119.99713 * 20 19 18 34 34 H 1.08996 * 109.46973 * 240.00149 * 20 19 18 35 35 H 1.07997 * 123.31095 * 180.21342 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1004 2.1292 1.2571 5 6 3.4558 1.9163 1.8806 6 1 4.1835 1.2872 1.3894 7 6 3.7673 2.5255 3.0777 8 7 2.8814 3.2919 3.6756 9 14 5.4475 2.2623 3.8502 10 1 6.2549 1.3648 2.9854 11 1 6.1389 3.5692 3.9885 12 1 5.2847 1.6442 5.1905 13 6 2.3922 1.9639 -1.1564 14 8 2.8765 3.0794 -1.1465 15 6 2.2137 1.2493 -2.4329 16 6 1.3192 0.2272 -2.5933 17 16 1.3681 -0.3741 -4.1886 18 6 2.6176 0.7733 -4.6456 19 6 3.2025 0.8712 -5.9298 20 6 2.7586 -0.0549 -7.0326 21 8 4.0623 1.7015 -6.1435 22 6 2.9353 1.5584 -3.5764 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.9546 3.1909 1.0583 29 1 1.3271 1.7777 1.9401 30 1 3.1004 3.7202 4.5178 31 1 0.6703 -0.1480 -1.8157 32 1 1.9857 -0.7246 -6.6555 33 1 2.3588 0.5310 -7.8602 34 1 3.6097 -0.6406 -7.3798 35 1 3.6775 2.3419 -3.6156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294619953.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:59 Heat of formation + Delta-G solvation = -18.332270 kcal Electronic energy + Delta-G solvation = -19495.570887 eV Core-core repulsion = 16393.621323 eV Total energy + Delta-G solvation = -3101.949564 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.10329 -39.30663 -36.55677 -35.65647 -32.92848 -31.55705 -30.54077 -29.16300 -27.25297 -25.23372 -23.59176 -23.14683 -21.32795 -19.62701 -18.61531 -17.47600 -16.68503 -16.40740 -15.61895 -15.43936 -15.29223 -14.90026 -14.41762 -14.27326 -13.95202 -13.43460 -12.98113 -12.85354 -12.59576 -12.39836 -12.21247 -12.09551 -11.94288 -11.69198 -11.30886 -11.18527 -10.97050 -10.83128 -10.61003 -10.15660 -10.05261 -9.65802 -9.13091 -8.92375 -8.66113 -8.45655 -7.75723 -6.06618 -4.11072 0.11901 1.31734 1.64654 1.70025 2.68627 3.29328 3.37353 3.41229 3.66880 3.89817 4.08854 4.44117 4.74322 4.81277 5.02239 5.12780 5.14037 5.21233 5.22895 5.28665 5.41628 5.54633 5.59857 5.74861 5.79607 6.05925 6.10941 6.18225 6.36017 7.00285 7.36177 7.37847 7.46695 7.89683 8.19627 8.30441 8.85329 9.00416 9.54142 11.01635 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.024342 B = 0.004497 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.983231 B = 6224.773991 C = 6913.752541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.087 3.913 3 N -0.586 5.586 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.561 3.439 14 O -0.529 6.529 15 C -0.155 4.155 16 C -0.219 4.219 17 S 0.227 5.773 18 C -0.324 4.324 19 C 0.423 3.577 20 C -0.196 4.196 21 O -0.458 6.458 22 C 0.009 3.991 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.035 0.965 30 H 0.263 0.737 31 H 0.208 0.792 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.342 -12.611 -16.295 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.038 4.038 3 N -0.317 5.317 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.210 1.210 13 C 0.345 3.655 14 O -0.407 6.407 15 C -0.171 4.171 16 C -0.357 4.357 17 S 0.495 5.505 18 C -0.441 4.441 19 C 0.302 3.698 20 C -0.254 4.254 21 O -0.336 6.336 22 C -0.023 4.023 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.224 0.776 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.460 -12.631 -16.978 22.438 hybrid contribution 1.505 0.913 1.516 2.324 sum -5.954 -11.719 -15.462 20.294 Atomic orbital electron populations 1.22423 0.96869 1.02034 1.03043 1.21948 0.93444 0.84843 1.03538 1.48127 1.61990 1.13042 1.08559 1.19331 0.97242 0.92543 0.78059 1.21460 0.99546 1.29851 1.05621 0.92328 1.24928 0.97352 0.94854 0.96928 1.69935 1.34468 1.31358 1.17633 0.86434 0.83997 0.78118 0.78844 1.19784 1.20827 1.20960 1.17566 0.79391 0.85871 0.82632 1.90793 1.43754 1.19577 1.86595 1.19525 1.00685 0.99857 0.97065 1.27730 1.04141 1.00666 1.03162 1.82670 1.33031 1.32872 1.01934 1.23945 1.10559 1.08422 1.01209 1.20128 0.80151 0.82633 0.86908 1.22215 1.03545 1.00412 0.99196 1.90626 1.26727 1.32802 1.83489 1.20961 0.96131 0.96176 0.89046 0.92149 0.91504 0.90776 0.89681 0.90219 0.93769 0.94685 0.92741 0.77627 0.90684 0.88500 0.88483 0.82124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.23 8.98 37.16 0.33 -1.90 16 2 C 0.09 1.32 5.57 -4.04 -0.02 1.30 16 3 N -0.59 -12.29 2.46 -176.34 -0.43 -12.72 16 4 C 0.25 6.37 5.14 -5.19 -0.03 6.34 16 5 C -0.53 -14.90 9.39 -34.44 -0.32 -15.23 16 6 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 9 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.56 12.10 7.56 -12.54 -0.09 12.00 16 14 O -0.53 -13.85 16.46 5.26 0.09 -13.77 16 15 C -0.15 -2.56 5.48 -106.54 -0.58 -3.15 16 16 C -0.22 -2.67 8.12 30.20 0.25 -2.43 16 17 S 0.23 2.09 21.47 -107.50 -2.31 -0.21 16 18 C -0.32 -4.14 6.19 -39.02 -0.24 -4.38 16 19 C 0.42 5.18 7.05 -33.09 -0.23 4.94 16 20 C -0.20 -1.46 10.26 36.00 0.37 -1.09 16 21 O -0.46 -7.36 17.44 5.44 0.09 -7.27 16 22 C 0.01 0.15 9.51 -40.07 -0.38 -0.23 16 23 H 0.06 0.68 6.39 -51.93 -0.33 0.35 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 1.01 7.98 -51.93 -0.41 0.60 16 26 H 0.08 1.35 8.13 -51.93 -0.42 0.93 16 27 H 0.08 1.04 4.75 -51.93 -0.25 0.79 16 28 H 0.04 1.29 7.49 -51.93 -0.39 0.90 16 29 H 0.04 0.90 7.91 -51.93 -0.41 0.49 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.21 2.19 2.60 -52.49 -0.14 2.05 16 32 H 0.07 0.42 6.56 -51.93 -0.34 0.08 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.16 2.82 8.00 -52.49 -0.42 2.40 16 LS Contribution 311.03 15.07 4.69 4.69 Total: -1.00 -34.75 311.03 -7.14 -41.89 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -3.92 Total: -1.68 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -1.06 Total: -2.15 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.30 Total: -38.44 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: 0.18 Total: -21.03 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.31 Total: -0.21 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.75 -7.14 -41.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294619953.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.559 kcal (2) G-P(sol) polarization free energy of solvation -34.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds