Wall clock time and date at job start Tue Mar 31 2020 06:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47262 * 2 1 4 4 C 1.53000 * 109.47019 * 119.99778 * 2 1 3 5 5 C 1.50697 * 109.46916 * 185.00147 * 4 2 1 6 6 H 1.08000 * 120.00277 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99824 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99944 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99803 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47327 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46889 * 120.00242 * 9 7 5 12 12 H 1.48504 * 109.47035 * 239.99769 * 9 7 5 13 13 S 1.81399 * 109.47128 * 239.99642 * 2 1 3 14 14 C 1.81401 * 102.99912 * 65.00010 * 13 2 1 15 15 C 1.50702 * 109.47222 * 179.97438 * 14 13 2 16 16 C 1.38235 * 119.99834 * 89.99928 * 15 14 13 17 17 C 1.38234 * 119.99692 * 180.02562 * 16 15 14 18 18 C 1.38241 * 120.00104 * 0.02562 * 17 16 15 19 19 N 1.48020 * 120.00001 * 179.97438 * 18 17 16 20 20 O 1.21803 * 119.99894 * 359.97438 * 19 18 17 21 21 O 1.21799 * 119.99903 * 179.72763 * 19 18 17 22 22 C 1.38239 * 119.99659 * 0.25361 * 18 17 16 23 23 C 1.38231 * 119.99991 * 359.46880 * 22 18 17 24 24 H 1.09000 * 109.47262 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47336 * 300.00327 * 1 2 3 26 26 H 1.09004 * 109.47477 * 60.00317 * 1 2 3 27 27 H 1.09003 * 109.46944 * 305.00147 * 4 2 1 28 28 H 1.09003 * 109.47086 * 65.00072 * 4 2 1 29 29 H 0.97000 * 119.99528 * 180.02562 * 8 7 5 30 30 H 1.09010 * 109.47242 * 59.99924 * 14 13 2 31 31 H 1.09002 * 109.47345 * 299.99964 * 14 13 2 32 32 H 1.07998 * 119.99910 * 359.97438 * 16 15 14 33 33 H 1.08002 * 120.00159 * 179.97438 * 17 16 15 34 34 H 1.07999 * 119.99627 * 179.73007 * 22 18 17 35 35 H 1.08001 * 119.99546 * 180.27511 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5418 -0.6148 1.3127 6 1 4.0789 -0.0854 0.5396 7 6 4.2304 -1.1934 2.3579 8 7 3.5764 -1.8377 3.2996 9 14 6.0921 -1.0621 2.4362 10 1 6.5838 -0.2927 1.2651 11 1 6.4871 -0.3666 3.6874 12 1 6.6855 -2.4234 2.4180 13 16 2.1347 -0.8552 -1.4811 14 6 1.5664 0.2152 -2.8309 15 6 1.9984 -0.3691 -4.1512 16 6 1.1738 -1.2564 -4.8172 17 6 1.5703 -1.7927 -6.0280 18 6 2.7916 -1.4421 -6.5725 19 7 3.2164 -2.0169 -7.8687 20 8 2.4901 -2.7990 -8.4554 21 8 4.2904 -1.7042 -8.3508 22 6 3.6187 -0.5593 -5.9035 23 6 3.2197 -0.0185 -4.6956 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.6053 -0.2616 2.1370 28 1 1.7516 -1.7715 1.2056 29 1 4.0608 -2.2444 4.0350 30 1 2.0001 1.2084 -2.7142 31 1 0.4792 0.2880 -2.8037 32 1 0.2202 -1.5312 -4.3912 33 1 0.9263 -2.4863 -6.5483 34 1 4.5748 -0.2888 -6.3268 35 1 3.8640 0.6746 -4.1752 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298470429.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:39 Heat of formation + Delta-G solvation = -12.984426 kcal Electronic energy + Delta-G solvation = -18516.919201 eV Core-core repulsion = 15415.201538 eV Total energy + Delta-G solvation = -3101.717664 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.27173 -40.55115 -37.70699 -36.38422 -34.52676 -34.01151 -32.42063 -29.95605 -29.18336 -26.21921 -25.22715 -24.20041 -22.96184 -22.08369 -20.40689 -19.78369 -18.63716 -18.50266 -17.49576 -16.70062 -16.59466 -16.53001 -16.06139 -15.73544 -14.88138 -14.84988 -14.35860 -14.15918 -13.82742 -13.71445 -13.34208 -13.13542 -12.79196 -12.77774 -12.54411 -12.43080 -12.34675 -12.33055 -12.29180 -12.17862 -11.44530 -11.19792 -10.77972 -10.49136 -10.38550 -10.20503 -8.47239 -8.19507 -6.26668 -1.31535 -0.01451 0.11451 0.35649 0.99375 1.38442 1.40713 1.52189 1.81874 2.38480 2.41300 3.16370 3.36764 3.36972 3.51799 3.76413 3.94203 4.12587 4.25798 4.27208 4.29929 4.51225 4.60098 4.68851 4.75875 4.77617 4.93080 5.04202 5.14055 5.19074 5.25006 5.40975 5.46346 5.55200 5.79480 6.21039 6.46246 6.86910 7.41132 8.92562 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.020686 B = 0.003699 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.216636 B = 7568.292182 C = 8484.211604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.036 4.036 3 H 0.079 0.921 4 C 0.043 3.957 5 C -0.521 4.521 6 H 0.065 0.935 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.955 3.045 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.285 1.285 13 S -0.269 6.269 14 C -0.062 4.062 15 C -0.009 4.009 16 C -0.099 4.099 17 C -0.052 4.052 18 C -0.065 4.065 19 N 0.032 4.968 20 O -0.178 6.178 21 O -0.185 6.185 22 C -0.054 4.054 23 C -0.103 4.103 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.010 0.990 28 H -0.005 1.005 29 H 0.261 0.739 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.172 0.828 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.444 5.853 -16.991 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 H 0.097 0.903 4 C 0.006 3.994 5 C -0.560 4.560 6 H 0.084 0.916 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.780 3.220 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.211 1.211 13 S -0.039 6.039 14 C -0.208 4.208 15 C -0.011 4.011 16 C -0.119 4.119 17 C -0.071 4.071 18 C -0.149 4.149 19 N 0.546 4.454 20 O -0.392 6.392 21 O -0.397 6.397 22 C -0.073 4.073 23 C -0.123 4.123 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.028 0.972 28 H 0.013 0.987 29 H 0.070 0.930 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.189 0.811 33 H 0.185 0.815 34 H 0.181 0.819 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.031 5.105 -16.240 18.060 hybrid contribution 0.551 0.588 0.299 0.860 sum -5.479 5.693 -15.941 17.792 Atomic orbital electron populations 1.22056 0.92315 1.02591 1.02706 1.23177 0.98383 1.00516 0.94387 0.90269 1.18832 0.95409 0.94247 0.90956 1.21638 0.93029 1.33610 1.07686 0.91635 1.25850 1.03076 0.95164 0.95539 1.70083 1.37309 1.37274 1.12916 0.85539 0.80337 0.77776 0.78306 1.18468 1.20491 1.21105 1.87653 1.76643 1.38465 1.01104 1.22507 1.05726 1.01329 0.91277 1.19909 0.93884 0.93857 0.93459 1.21377 1.01913 0.95609 0.93025 1.21241 0.92981 0.97615 0.95300 1.21350 1.00257 1.06350 0.86951 1.43934 0.99786 0.98805 1.02842 1.94509 1.51855 1.30392 1.62422 1.94520 1.10496 1.64771 1.69922 1.21197 0.99749 0.92352 0.94034 1.21355 0.96210 1.00711 0.94050 0.92449 0.91786 0.90367 0.97161 0.98715 0.92988 0.87369 0.86479 0.81050 0.81519 0.81925 0.81818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.10 71.98 0.66 -3.12 16 2 C -0.04 -1.29 2.77 30.59 0.08 -1.20 16 3 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 4 C 0.04 2.13 4.45 29.85 0.13 2.26 16 5 C -0.52 -28.06 8.53 25.60 0.22 -27.84 16 6 H 0.07 3.43 7.60 -2.91 -0.02 3.40 16 7 C 0.00 0.06 5.46 84.66 0.46 0.52 16 8 N -0.93 -55.67 13.29 21.45 0.28 -55.38 16 9 Si 0.95 43.75 29.54 68.60 2.03 45.77 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 S -0.27 -8.76 20.44 -56.49 -1.15 -9.91 16 14 C -0.06 -1.18 5.76 71.24 0.41 -0.77 16 15 C -0.01 -0.17 5.14 -19.87 -0.10 -0.27 16 16 C -0.10 -1.57 9.70 22.27 0.22 -1.35 16 17 C -0.05 -0.92 9.56 22.27 0.21 -0.70 16 18 C -0.07 -1.39 6.85 36.38 0.25 -1.14 16 19 N 0.03 0.83 4.45 -46.46 -0.21 0.62 16 20 O -0.18 -4.80 18.45 18.88 0.35 -4.45 16 21 O -0.19 -5.12 18.45 18.89 0.35 -4.77 16 22 C -0.05 -1.02 9.56 22.27 0.21 -0.80 16 23 C -0.10 -1.81 9.70 22.27 0.22 -1.59 16 24 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.08 1.56 6.92 -2.38 -0.02 1.55 16 27 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 28 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 30 H 0.11 1.84 8.09 -2.38 -0.02 1.82 16 31 H 0.12 1.73 7.09 -2.39 -0.02 1.71 16 32 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.17 2.39 7.61 -2.91 -0.02 2.37 16 34 H 0.16 2.65 7.61 -2.91 -0.02 2.63 16 35 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -66.62 322.57 5.70 -60.92 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: 1.09 Total: 3.22 kcal Atomic # 6 Polarization: -38.98 SS G_CDS: 2.97 Total: -36.02 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.08 Total: -54.76 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.70 Total: -9.22 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.15 Total: -9.91 kcal Total: -66.62 5.70 -60.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298470429.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.931 kcal (2) G-P(sol) polarization free energy of solvation -66.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds