Wall clock time and date at job start Tue Mar 31 2020 06:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47221 * 2 1 4 4 C 1.53001 * 109.47115 * 239.99314 * 2 1 3 5 5 C 1.50704 * 109.46888 * 175.00233 * 4 2 1 6 6 H 1.08000 * 120.00122 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99642 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00292 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99792 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47187 * 359.97438 * 9 7 5 11 11 H 1.48489 * 109.47616 * 119.99735 * 9 7 5 12 12 H 1.48499 * 109.46688 * 240.00008 * 9 7 5 13 13 S 1.81410 * 109.46887 * 119.99542 * 2 1 3 14 14 C 1.81400 * 102.99826 * 294.99823 * 13 2 1 15 15 C 1.50703 * 109.47093 * 180.02562 * 14 13 2 16 16 C 1.38235 * 119.99838 * 89.99976 * 15 14 13 17 17 C 1.38234 * 119.99692 * 180.02562 * 16 15 14 18 18 C 1.38241 * 120.00104 * 0.02562 * 17 16 15 19 19 N 1.48020 * 120.00001 * 179.97438 * 18 17 16 20 20 O 1.21803 * 119.99894 * 359.97438 * 19 18 17 21 21 O 1.21799 * 119.99903 * 179.72763 * 19 18 17 22 22 C 1.38239 * 119.99659 * 0.25361 * 18 17 16 23 23 C 1.38231 * 120.00010 * 359.49273 * 22 18 17 24 24 H 1.09003 * 109.46696 * 60.00522 * 1 2 3 25 25 H 1.08999 * 109.47545 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47258 * 300.00786 * 1 2 3 27 27 H 1.08994 * 109.47030 * 294.99828 * 4 2 1 28 28 H 1.08998 * 109.46895 * 55.00530 * 4 2 1 29 29 H 0.96999 * 120.00269 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.47292 * 60.00210 * 14 13 2 31 31 H 1.09002 * 109.47401 * 300.00148 * 14 13 2 32 32 H 1.07998 * 119.99910 * 0.02562 * 16 15 14 33 33 H 1.08002 * 120.00159 * 179.97438 * 17 16 15 34 34 H 1.07999 * 119.99627 * 179.73007 * 22 18 17 35 35 H 1.08002 * 119.99557 * 180.23223 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5420 -0.6151 -1.3126 6 1 4.0790 -0.0856 -0.5395 7 6 4.2304 -1.1929 -2.3581 8 7 3.5764 -1.8373 -3.2997 9 14 6.0921 -1.0618 -2.4364 10 1 6.5838 -0.2922 -1.2653 11 1 6.6855 -2.4229 -2.4192 12 1 6.4870 -0.3653 -3.6871 13 16 2.1346 -0.8551 1.4813 14 6 1.5664 0.2155 2.8309 15 6 1.9983 -0.3685 4.1513 16 6 3.2192 -0.0171 4.6962 17 6 3.6156 -0.5533 5.9071 18 6 2.7914 -1.4413 6.5728 19 7 3.2161 -2.0159 7.8691 20 8 4.2920 -1.7066 8.3490 21 8 2.4877 -2.7944 8.4580 22 6 1.5730 -1.7971 6.0250 23 6 1.1744 -1.2569 4.8167 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 1.7517 -1.7716 -1.2054 28 1 1.6055 -0.2619 -2.1369 29 1 4.0608 -2.2441 -4.0351 30 1 0.4792 0.2884 2.8037 31 1 2.0001 1.2087 2.7141 32 1 3.8632 0.6763 4.1759 33 1 4.5696 -0.2792 6.3327 34 1 0.9311 -2.4942 6.5430 35 1 0.2209 -1.5320 4.3906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298470430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:42 Heat of formation + Delta-G solvation = 1.253035 kcal Electronic energy + Delta-G solvation = -18516.199538 eV Core-core repulsion = 15415.099257 eV Total energy + Delta-G solvation = -3101.100281 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.28603 -39.73310 -36.68012 -34.67442 -33.64087 -32.14537 -31.64638 -28.88699 -27.53982 -25.25761 -23.45008 -23.38458 -21.98863 -20.57767 -19.50768 -18.78208 -17.64303 -16.48518 -16.31198 -15.84384 -15.59287 -14.96245 -14.83593 -14.53971 -14.13265 -13.39527 -13.27059 -13.06325 -12.56236 -12.33751 -11.92275 -11.78833 -11.69866 -11.61272 -11.30774 -11.26414 -11.10981 -10.88498 -10.61105 -10.57032 -9.68011 -9.62587 -9.47093 -9.28132 -9.10652 -8.44281 -7.14435 -6.08951 -4.10499 -0.35852 0.74211 1.10050 1.27932 2.11929 3.05961 3.21179 3.27245 3.35285 3.39223 4.13582 4.22313 4.28601 4.40166 4.56208 4.72412 5.03252 5.06312 5.28869 5.36713 5.42944 5.50408 5.52399 5.57686 5.60824 5.81299 5.98156 6.03072 6.20086 6.31940 6.45675 6.56607 7.41536 7.51365 7.51773 7.88228 8.24944 8.94302 9.53710 11.02434 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.020688 B = 0.003698 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.086093 B = 7569.074437 C = 8484.520161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.045 4.045 3 H 0.076 0.924 4 C 0.039 3.961 5 C -0.516 4.516 6 H 0.064 0.936 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.285 1.285 13 S -0.210 6.210 14 C -0.086 4.086 15 C 0.000 4.000 16 C -0.104 4.104 17 C -0.052 4.052 18 C -0.052 4.052 19 N 0.032 4.968 20 O -0.165 6.165 21 O -0.166 6.166 22 C -0.052 4.052 23 C -0.107 4.107 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.040 0.960 27 H 0.026 0.974 28 H 0.034 0.966 29 H 0.261 0.739 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.067 4.620 15.786 17.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 H 0.094 0.906 4 C 0.001 3.999 5 C -0.555 4.555 6 H 0.082 0.918 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.720 3.280 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.211 1.211 13 S 0.020 5.980 14 C -0.233 4.233 15 C -0.002 4.002 16 C -0.124 4.124 17 C -0.071 4.071 18 C -0.136 4.136 19 N 0.550 4.450 20 O -0.381 6.381 21 O -0.381 6.381 22 C -0.072 4.072 23 C -0.127 4.127 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.168 0.832 33 H 0.171 0.829 34 H 0.171 0.829 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.666 3.860 15.023 16.513 hybrid contribution 0.483 0.955 0.010 1.070 sum -5.183 4.815 15.032 16.614 Atomic orbital electron populations 1.22131 0.95202 1.02367 1.00790 1.23475 0.96079 1.01566 0.96223 0.90562 1.19030 0.96608 0.95654 0.88603 1.21259 0.91459 1.34627 1.08140 0.91814 1.24990 0.98508 0.95193 0.95616 1.69955 1.35572 1.35860 1.12107 0.86530 0.85695 0.77893 0.77921 1.19588 1.20980 1.21076 1.87580 1.75377 1.36163 0.98873 1.22536 1.04280 1.02431 0.94091 1.19852 0.93398 0.93238 0.93676 1.21162 0.96191 1.00837 0.94251 1.21035 0.99357 0.92690 0.93990 1.21116 0.99342 1.05489 0.87676 1.43646 1.00050 0.99034 1.02280 1.94533 1.09852 1.64304 1.69372 1.94526 1.51815 1.30183 1.61592 1.21010 0.93385 0.97627 0.95142 1.21115 1.01236 0.96652 0.93672 0.91969 0.91816 0.94056 0.95537 0.94790 0.92959 0.88983 0.88839 0.83161 0.82898 0.82942 0.83320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.10 37.16 0.34 -1.81 16 2 C -0.04 -0.82 2.77 -26.73 -0.07 -0.90 16 3 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16 4 C 0.04 0.94 4.45 -27.88 -0.12 0.81 16 5 C -0.52 -13.77 8.53 -34.44 -0.29 -14.07 16 6 H 0.06 1.68 7.60 -52.49 -0.40 1.28 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -26.06 13.29 55.43 0.74 -25.32 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 S -0.21 -3.60 20.44 -107.50 -2.20 -5.79 16 14 C -0.09 -0.99 5.76 36.01 0.21 -0.79 16 15 C 0.00 0.00 5.14 -104.62 -0.54 -0.54 16 16 C -0.10 -1.06 9.70 -39.58 -0.38 -1.44 16 17 C -0.05 -0.53 9.56 -39.58 -0.38 -0.91 16 18 C -0.05 -0.61 6.85 -79.94 -0.55 -1.15 16 19 N 0.03 0.43 4.45 33.96 0.15 0.58 16 20 O -0.17 -2.32 18.45 -29.46 -0.54 -2.86 16 21 O -0.17 -2.30 18.45 -29.46 -0.54 -2.85 16 22 C -0.05 -0.52 9.56 -39.58 -0.38 -0.90 16 23 C -0.11 -1.02 9.70 -39.59 -0.38 -1.41 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.04 0.50 6.92 -51.93 -0.36 0.14 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.09 0.91 7.09 -51.92 -0.37 0.54 16 31 H 0.09 0.99 8.08 -51.92 -0.42 0.57 16 32 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.15 1.36 7.61 -52.49 -0.40 0.96 16 34 H 0.15 1.28 7.61 -52.49 -0.40 0.88 16 35 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 322.57 15.07 4.86 4.86 Total: -1.00 -30.21 322.57 -9.65 -39.86 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -4.44 Total: -3.11 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -2.65 Total: -21.59 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.89 Total: -24.75 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -1.09 Total: -5.71 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -2.20 Total: -5.79 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.21 -9.65 -39.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298470430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.109 kcal (2) G-P(sol) polarization free energy of solvation -30.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds