Wall clock time and date at job start Tue Mar 31 2020 06:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47221 * 2 1 4 4 C 1.53001 * 109.47115 * 239.99314 * 2 1 3 5 5 C 1.50704 * 109.46888 * 175.00233 * 4 2 1 6 6 H 1.08000 * 120.00122 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99642 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00292 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99792 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47187 * 359.97438 * 9 7 5 11 11 H 1.48489 * 109.47616 * 119.99735 * 9 7 5 12 12 H 1.48499 * 109.46688 * 240.00008 * 9 7 5 13 13 S 1.81410 * 109.46887 * 119.99542 * 2 1 3 14 14 C 1.81400 * 102.99826 * 294.99823 * 13 2 1 15 15 C 1.50703 * 109.47093 * 180.02562 * 14 13 2 16 16 C 1.38235 * 119.99838 * 89.99976 * 15 14 13 17 17 C 1.38234 * 119.99692 * 180.02562 * 16 15 14 18 18 C 1.38241 * 120.00104 * 0.02562 * 17 16 15 19 19 N 1.48020 * 120.00001 * 179.97438 * 18 17 16 20 20 O 1.21803 * 119.99894 * 359.97438 * 19 18 17 21 21 O 1.21799 * 119.99903 * 179.72763 * 19 18 17 22 22 C 1.38239 * 119.99659 * 0.25361 * 18 17 16 23 23 C 1.38231 * 120.00010 * 359.49273 * 22 18 17 24 24 H 1.09003 * 109.46696 * 60.00522 * 1 2 3 25 25 H 1.08999 * 109.47545 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47258 * 300.00786 * 1 2 3 27 27 H 1.08994 * 109.47030 * 294.99828 * 4 2 1 28 28 H 1.08998 * 109.46895 * 55.00530 * 4 2 1 29 29 H 0.96999 * 120.00269 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.47292 * 60.00210 * 14 13 2 31 31 H 1.09002 * 109.47401 * 300.00148 * 14 13 2 32 32 H 1.07998 * 119.99910 * 0.02562 * 16 15 14 33 33 H 1.08002 * 120.00159 * 179.97438 * 17 16 15 34 34 H 1.07999 * 119.99627 * 179.73007 * 22 18 17 35 35 H 1.08002 * 119.99557 * 180.23223 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5420 -0.6151 -1.3126 6 1 4.0790 -0.0856 -0.5395 7 6 4.2304 -1.1929 -2.3581 8 7 3.5764 -1.8373 -3.2997 9 14 6.0921 -1.0618 -2.4364 10 1 6.5838 -0.2922 -1.2653 11 1 6.6855 -2.4229 -2.4192 12 1 6.4870 -0.3653 -3.6871 13 16 2.1346 -0.8551 1.4813 14 6 1.5664 0.2155 2.8309 15 6 1.9983 -0.3685 4.1513 16 6 3.2192 -0.0171 4.6962 17 6 3.6156 -0.5533 5.9071 18 6 2.7914 -1.4413 6.5728 19 7 3.2161 -2.0159 7.8691 20 8 4.2920 -1.7066 8.3490 21 8 2.4877 -2.7944 8.4580 22 6 1.5730 -1.7971 6.0250 23 6 1.1744 -1.2569 4.8167 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 1.7517 -1.7716 -1.2054 28 1 1.6055 -0.2619 -2.1369 29 1 4.0608 -2.2441 -4.0351 30 1 0.4792 0.2884 2.8037 31 1 2.0001 1.2087 2.7141 32 1 3.8632 0.6763 4.1759 33 1 4.5696 -0.2792 6.3327 34 1 0.9311 -2.4942 6.5430 35 1 0.2209 -1.5320 4.3906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298470430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:41 Heat of formation + Delta-G solvation = -12.972787 kcal Electronic energy + Delta-G solvation = -18516.816416 eV Core-core repulsion = 15415.099257 eV Total energy + Delta-G solvation = -3101.717159 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.27173 -40.55115 -37.70698 -36.38407 -34.52690 -34.01196 -32.42062 -29.95615 -29.18339 -26.21933 -25.22739 -24.20039 -22.96179 -22.08360 -20.40688 -19.78368 -18.63716 -18.50273 -17.49555 -16.70054 -16.59507 -16.53031 -16.06095 -15.73549 -14.88118 -14.85011 -14.35877 -14.15955 -13.82690 -13.71455 -13.34224 -13.13541 -12.79225 -12.77786 -12.54451 -12.43012 -12.34664 -12.33054 -12.29180 -12.17922 -11.44546 -11.19755 -10.77974 -10.49153 -10.38548 -10.20510 -8.47235 -8.19464 -6.26665 -1.31534 -0.01446 0.11451 0.35650 0.99377 1.38487 1.40710 1.52166 1.81864 2.38484 2.41308 3.16403 3.36764 3.36974 3.51801 3.76420 3.94206 4.12613 4.25795 4.27222 4.29926 4.51244 4.60103 4.68852 4.75890 4.77605 4.93081 5.04209 5.14057 5.19076 5.25010 5.41004 5.46349 5.55236 5.79481 6.21022 6.46247 6.86911 7.41155 8.92604 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.020688 B = 0.003698 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.086093 B = 7569.074437 C = 8484.520161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.036 4.036 3 H 0.079 0.921 4 C 0.043 3.957 5 C -0.521 4.521 6 H 0.065 0.935 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.955 3.045 10 H -0.261 1.261 11 H -0.285 1.285 12 H -0.279 1.279 13 S -0.269 6.269 14 C -0.062 4.062 15 C -0.009 4.009 16 C -0.103 4.103 17 C -0.054 4.054 18 C -0.065 4.065 19 N 0.032 4.968 20 O -0.185 6.185 21 O -0.177 6.177 22 C -0.052 4.052 23 C -0.099 4.099 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.077 0.923 27 H -0.005 1.005 28 H 0.010 0.990 29 H 0.261 0.739 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.167 0.833 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.447 5.850 16.991 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 H 0.097 0.903 4 C 0.006 3.994 5 C -0.560 4.560 6 H 0.084 0.916 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.780 3.220 10 H -0.185 1.185 11 H -0.211 1.211 12 H -0.205 1.205 13 S -0.039 6.039 14 C -0.208 4.208 15 C -0.011 4.011 16 C -0.123 4.123 17 C -0.073 4.073 18 C -0.149 4.149 19 N 0.546 4.454 20 O -0.397 6.397 21 O -0.392 6.392 22 C -0.071 4.071 23 C -0.119 4.119 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.013 0.987 28 H 0.028 0.972 29 H 0.070 0.930 30 H 0.135 0.865 31 H 0.126 0.874 32 H 0.182 0.818 33 H 0.181 0.819 34 H 0.185 0.815 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -6.033 5.102 16.240 18.060 hybrid contribution 0.552 0.590 -0.299 0.861 sum -5.482 5.692 15.941 17.792 Atomic orbital electron populations 1.22057 0.92314 1.02591 1.02705 1.23179 0.98383 1.00514 0.94382 0.90271 1.18832 0.95409 0.94248 0.90958 1.21638 0.93032 1.33635 1.07659 0.91636 1.25846 1.03073 0.95170 0.95533 1.70078 1.37316 1.37264 1.12926 0.85539 0.80343 0.77777 0.78304 1.18472 1.21095 1.20501 1.87654 1.76649 1.38459 1.01109 1.22505 1.05726 1.01328 0.91277 1.19909 0.93879 0.93861 0.93461 1.21356 0.96222 1.00759 0.93990 1.21198 0.99714 0.92380 0.94038 1.21350 1.00361 1.06242 0.86954 1.43934 0.99794 0.98797 1.02843 1.94521 1.10336 1.64774 1.70089 1.94508 1.51788 1.30628 1.62244 1.21240 0.92958 0.97656 0.95287 1.21376 1.01895 0.95569 0.93082 0.91787 0.92447 0.90366 0.98710 0.97159 0.92985 0.86477 0.87373 0.81817 0.81922 0.81521 0.81051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.10 71.98 0.66 -3.12 16 2 C -0.04 -1.29 2.77 30.59 0.08 -1.20 16 3 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 4 C 0.04 2.12 4.45 29.85 0.13 2.26 16 5 C -0.52 -28.06 8.53 25.60 0.22 -27.84 16 6 H 0.07 3.43 7.60 -2.91 -0.02 3.40 16 7 C 0.00 0.06 5.46 84.66 0.46 0.53 16 8 N -0.93 -55.66 13.29 21.45 0.28 -55.38 16 9 Si 0.95 43.75 29.54 68.60 2.03 45.77 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 13 S -0.27 -8.76 20.44 -56.49 -1.15 -9.91 16 14 C -0.06 -1.18 5.76 71.24 0.41 -0.77 16 15 C -0.01 -0.17 5.14 -19.87 -0.10 -0.27 16 16 C -0.10 -1.81 9.70 22.27 0.22 -1.59 16 17 C -0.05 -1.02 9.56 22.27 0.21 -0.80 16 18 C -0.07 -1.39 6.85 36.38 0.25 -1.14 16 19 N 0.03 0.83 4.45 -46.46 -0.21 0.62 16 20 O -0.19 -5.12 18.45 18.88 0.35 -4.77 16 21 O -0.18 -4.80 18.45 18.89 0.35 -4.45 16 22 C -0.05 -0.92 9.56 22.27 0.21 -0.70 16 23 C -0.10 -1.57 9.70 22.27 0.22 -1.35 16 24 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.08 1.57 6.92 -2.39 -0.02 1.55 16 27 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 28 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 30 H 0.12 1.73 7.09 -2.39 -0.02 1.71 16 31 H 0.11 1.84 8.08 -2.39 -0.02 1.82 16 32 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 33 H 0.16 2.65 7.61 -2.91 -0.02 2.63 16 34 H 0.17 2.40 7.61 -2.91 -0.02 2.37 16 35 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -66.61 322.57 5.70 -60.91 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: 1.09 Total: 3.22 kcal Atomic # 6 Polarization: -38.98 SS G_CDS: 2.97 Total: -36.01 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.08 Total: -54.76 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.70 Total: -9.22 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.15 Total: -9.91 kcal Total: -66.61 5.70 -60.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298470430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.939 kcal (2) G-P(sol) polarization free energy of solvation -66.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds