Wall clock time and date at job start Tue Mar 31 2020 06:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81400 * 109.47022 * 2 1 4 4 O 1.42101 * 109.47420 * 289.05764 * 3 2 1 5 5 C 1.76201 * 103.00276 * 180.02562 * 3 2 1 6 6 C 1.37953 * 120.08000 * 94.99981 * 5 3 2 7 7 C 1.38355 * 120.15275 * 179.97438 * 6 5 3 8 8 C 1.38400 * 120.30345 * 0.02562 * 7 6 5 9 9 C 1.37909 * 120.15428 * 359.95949 * 8 7 6 10 10 C 1.39634 * 120.07360 * 275.23930 * 5 3 2 11 11 C 1.47723 * 120.15411 * 0.04115 * 10 5 3 12 12 O 1.21603 * 119.99848 * 305.76172 * 11 10 5 13 13 N 1.34770 * 120.00227 * 125.75881 * 11 10 5 14 14 C 1.46499 * 120.00065 * 3.77869 * 13 11 10 15 15 C 1.36874 * 120.00391 * 183.77787 * 13 11 10 16 16 H 1.08005 * 119.99585 * 7.77182 * 15 13 11 17 17 C 1.39046 * 120.00137 * 187.77453 * 15 13 11 18 18 N 1.31363 * 120.00303 * 7.87743 * 17 15 13 19 19 Si 1.86800 * 119.99929 * 187.87576 * 17 15 13 20 20 H 1.48505 * 109.47133 * 59.99992 * 19 17 15 21 21 H 1.48506 * 109.47275 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47080 * 300.00184 * 19 17 15 23 23 H 1.09000 * 109.46911 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47574 * 299.99672 * 1 2 3 25 25 H 1.09001 * 109.47147 * 59.99727 * 1 2 3 26 26 H 1.09003 * 109.47200 * 240.00529 * 2 1 3 27 27 H 1.08996 * 109.47180 * 119.99805 * 2 1 3 28 28 H 1.08003 * 119.92297 * 359.97438 * 6 5 3 29 29 H 1.07997 * 119.84739 * 180.02562 * 7 6 5 30 30 H 1.07999 * 119.91863 * 179.97438 * 8 7 6 31 31 H 1.08000 * 120.07997 * 180.02562 * 9 8 7 32 32 H 1.09008 * 109.46877 * 354.15816 * 14 13 11 33 33 H 1.09003 * 109.47289 * 114.15160 * 14 13 11 34 34 H 1.08999 * 109.47219 * 234.15868 * 14 13 11 35 35 H 0.96995 * 119.99997 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8801 2.3027 -1.2663 5 6 3.8854 1.5118 -0.0008 6 6 4.5837 1.5375 -1.1903 7 6 5.9585 1.3823 -1.1926 8 6 6.6427 1.1999 -0.0034 9 6 5.9573 1.1725 1.1930 10 6 4.5688 1.3232 1.2022 11 6 3.8272 1.2883 2.4793 12 8 3.0895 2.2073 2.7793 13 7 3.9681 0.2381 3.3120 14 6 4.9186 -0.8293 2.9905 15 6 3.2232 0.1686 4.4582 16 1 2.4354 0.8861 4.6345 17 6 3.4806 -0.8257 5.3955 18 7 4.5326 -1.6006 5.2590 19 14 2.3307 -1.0595 6.8489 20 1 0.9666 -1.3768 6.3548 21 1 2.8226 -2.1767 7.6947 22 1 2.2882 0.1887 7.6523 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.0559 1.6790 -2.1219 29 1 6.5002 1.4036 -2.1266 30 1 7.7158 1.0790 -0.0125 31 1 6.4924 1.0305 2.1203 32 1 5.3389 -0.6552 1.9999 33 1 5.7203 -0.8366 3.7290 34 1 4.4041 -1.7901 3.0032 35 1 4.7119 -2.2944 5.9127 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337532101.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:58 Heat of formation + Delta-G solvation = -27.742894 kcal Electronic energy + Delta-G solvation = -20280.325770 eV Core-core repulsion = 17177.968131 eV Total energy + Delta-G solvation = -3102.357639 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.51893 -37.58927 -35.36097 -34.84302 -32.43845 -31.98260 -30.84719 -30.58779 -26.48245 -24.96298 -23.52883 -22.78325 -22.32333 -19.64870 -17.56229 -17.14592 -16.66734 -16.06724 -15.26235 -15.16023 -14.72201 -14.36730 -14.18133 -14.15613 -13.81480 -13.49526 -12.90992 -12.68244 -12.37135 -11.98603 -11.96456 -11.76668 -11.61830 -11.46577 -11.12434 -11.03127 -10.92502 -10.80610 -10.51054 -10.34696 -9.79699 -9.21041 -9.04730 -8.72560 -8.38347 -8.03581 -7.74813 -6.42228 -3.97075 1.09880 1.48374 2.21155 3.08619 3.10359 3.16878 3.20068 3.58888 3.95415 4.02520 4.27346 4.67144 5.00605 5.09962 5.21317 5.22254 5.29801 5.35509 5.62258 5.62925 5.71524 5.98766 6.03030 6.15330 6.17934 6.29631 6.30430 6.46717 6.55408 6.61759 6.90234 7.10866 7.25288 7.41577 7.88028 8.29629 8.99076 9.22908 9.76457 10.50739 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.017956 B = 0.006994 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.007611 B = 4002.276811 C = 5024.259427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.463 4.463 3 S 1.354 4.646 4 O -0.874 6.874 5 C -0.431 4.431 6 C -0.061 4.061 7 C -0.139 4.139 8 C -0.092 4.092 9 C -0.113 4.113 10 C -0.009 4.009 11 C 0.447 3.553 12 O -0.580 6.580 13 N -0.420 5.420 14 C 0.096 3.904 15 C -0.301 4.301 16 H 0.113 0.887 17 C 0.030 3.970 18 N -0.877 5.877 19 Si 0.933 3.067 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.270 1.270 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.119 0.881 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.134 0.866 32 H 0.035 0.965 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.913 -0.286 -6.222 6.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.599 4.599 3 S 1.552 4.448 4 O -0.870 6.870 5 C -0.530 4.530 6 C -0.080 4.080 7 C -0.159 4.159 8 C -0.110 4.110 9 C -0.133 4.133 10 C -0.014 4.014 11 C 0.236 3.764 12 O -0.467 6.467 13 N -0.135 5.135 14 C -0.047 4.047 15 C -0.429 4.429 16 H 0.130 0.870 17 C -0.174 4.174 18 N -0.516 5.516 19 Si 0.760 3.240 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.195 1.195 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.137 0.863 28 H 0.144 0.856 29 H 0.139 0.861 30 H 0.143 0.857 31 H 0.151 0.849 32 H 0.053 0.947 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.104 0.772 -5.938 5.989 hybrid contribution 0.856 -1.688 -1.030 2.155 sum 0.960 -0.916 -6.967 7.092 Atomic orbital electron populations 1.21309 0.92282 1.02798 1.02313 1.27697 1.03625 1.21239 1.07349 1.71350 0.81445 0.86222 1.05776 1.92892 1.80583 1.67076 1.46451 1.27574 1.18948 1.10545 0.95888 1.20984 0.94561 0.95269 0.97182 1.21214 0.94342 1.02179 0.98116 1.21216 0.99768 0.97542 0.92456 1.21504 0.93549 0.99598 0.98624 1.19966 0.93949 0.94086 0.93381 1.17795 0.88314 0.85183 0.85144 1.90643 1.43085 1.36759 1.76195 1.43663 1.34099 1.17241 1.18532 1.22112 0.94278 0.90756 0.97599 1.19882 1.13822 1.14244 0.94965 0.86958 1.25415 0.96810 0.95923 0.99226 1.70081 1.25027 1.20215 1.36324 0.85870 0.79908 0.78189 0.80080 1.19578 1.20893 1.19512 0.91829 0.91079 0.92762 0.90228 0.86303 0.85571 0.86100 0.85676 0.84854 0.94694 0.89682 0.92125 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 9.92 37.16 0.37 -1.43 16 2 C -0.46 -7.48 6.60 37.16 0.25 -7.23 16 3 S 1.35 24.53 11.78 -107.50 -1.27 23.26 16 4 O -0.87 -18.48 16.78 -35.23 -0.59 -19.07 16 5 C -0.43 -8.08 5.66 -39.16 -0.22 -8.30 16 6 C -0.06 -1.04 9.44 -39.64 -0.37 -1.42 16 7 C -0.14 -2.02 10.04 -39.48 -0.40 -2.42 16 8 C -0.09 -1.31 10.03 -39.64 -0.40 -1.71 16 9 C -0.11 -1.91 7.41 -39.17 -0.29 -2.20 16 10 C -0.01 -0.17 4.84 -104.97 -0.51 -0.68 16 11 C 0.45 10.04 6.48 -12.39 -0.08 9.96 16 12 O -0.58 -14.11 15.61 5.27 0.08 -14.02 16 13 N -0.42 -9.83 3.02 -123.32 -0.37 -10.20 16 14 C 0.10 2.02 7.97 59.85 0.48 2.50 16 15 C -0.30 -7.55 9.53 -15.00 -0.14 -7.70 16 16 H 0.11 2.87 7.21 -52.48 -0.38 2.49 16 17 C 0.03 0.72 5.38 -17.45 -0.09 0.63 16 18 N -0.88 -21.21 9.66 55.50 0.54 -20.67 16 19 Si 0.93 19.03 29.56 -169.99 -5.02 14.00 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 27 H 0.12 1.98 8.14 -51.93 -0.42 1.56 16 28 H 0.13 2.14 7.34 -52.48 -0.39 1.76 16 29 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.13 2.17 7.39 -52.49 -0.39 1.78 16 32 H 0.03 0.64 4.62 -51.92 -0.24 0.41 16 33 H 0.08 1.89 6.74 -51.93 -0.35 1.54 16 34 H 0.06 1.34 7.43 -51.93 -0.39 0.95 16 35 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 LS Contribution 306.91 15.07 4.63 4.63 Total: -1.00 -29.63 306.91 -7.65 -37.28 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -4.22 Total: 4.81 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -1.41 Total: -20.01 kcal Atomic # 7 Polarization: -31.03 SS G_CDS: 0.16 Total: -30.87 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.51 Total: -33.10 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.00 kcal Atomic # 16 Polarization: 24.53 SS G_CDS: -1.27 Total: 23.26 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.63 -7.65 -37.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337532101.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.535 kcal (2) G-P(sol) polarization free energy of solvation -29.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds