Wall clock time and date at job start Tue Mar 31 2020 06:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47223 * 2 1 4 4 C 1.46504 * 120.00085 * 274.94939 * 3 2 1 5 5 C 1.50698 * 109.47164 * 262.30903 * 4 3 2 6 6 H 1.08005 * 119.99693 * 359.97438 * 5 4 3 7 7 C 1.37869 * 120.00264 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99995 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00256 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46902 * 60.00205 * 9 7 5 11 11 H 1.48495 * 109.47289 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47155 * 300.00657 * 9 7 5 13 13 C 1.34775 * 120.00356 * 94.94590 * 3 2 1 14 14 O 1.21604 * 119.99943 * 2.04917 * 13 3 2 15 15 C 1.47287 * 120.00139 * 182.05321 * 13 3 2 16 16 C 1.36705 * 125.13799 * 172.22045 * 15 13 3 17 17 C 1.36654 * 114.78472 * 179.97438 * 16 15 13 18 18 C 1.37028 * 114.68260 * 359.97438 * 17 16 15 19 19 C 1.46288 * 125.17836 * 179.97438 * 18 17 16 20 20 C 1.50700 * 120.00169 * 180.02562 * 19 18 17 21 21 O 1.21354 * 119.99701 * 359.97438 * 19 18 17 22 22 S 1.75828 * 109.64363 * 359.97438 * 18 17 16 23 23 H 1.09000 * 109.47422 * 59.99952 * 1 2 3 24 24 H 1.08998 * 109.47348 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47538 * 300.00458 * 1 2 3 26 26 H 1.08996 * 109.47075 * 239.99640 * 2 1 3 27 27 H 1.08998 * 109.47006 * 119.99401 * 2 1 3 28 28 H 1.09007 * 109.46643 * 22.30647 * 4 3 2 29 29 H 1.08997 * 109.47517 * 142.30643 * 4 3 2 30 30 H 0.96997 * 119.99751 * 179.97438 * 8 7 5 31 31 H 1.07991 * 122.60975 * 0.23023 * 16 15 13 32 32 H 1.07994 * 122.65600 * 180.02562 * 17 16 15 33 33 H 1.09006 * 109.46995 * 89.99486 * 20 19 18 34 34 H 1.09001 * 109.47022 * 209.99434 * 20 19 18 35 35 H 1.08998 * 109.46988 * 330.00053 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1593 2.1083 -1.2640 5 6 3.5928 2.0425 -1.7242 6 1 4.3256 1.5125 -1.1339 7 6 3.9688 2.6589 -2.8987 8 7 3.0765 3.3048 -3.6173 9 14 5.7459 2.5780 -3.4687 10 1 6.1381 1.1595 -3.6666 11 1 5.8888 3.3149 -4.7500 12 1 6.6236 3.1957 -2.4424 13 6 2.3378 1.9830 1.1628 14 8 2.2563 1.3676 2.2084 15 6 2.7857 3.3862 1.1671 16 6 2.9903 4.1433 2.2868 17 6 3.4072 5.4221 2.0452 18 6 3.5524 5.7358 0.7193 19 6 3.9844 7.0346 0.2029 20 6 4.1039 7.2526 -1.2835 21 8 4.2457 7.9366 0.9714 22 16 3.1404 4.3397 -0.2670 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 1.5147 1.6555 -2.0175 29 1 1.8719 3.1496 -1.1183 30 1 3.3412 3.7388 -4.4434 31 1 2.8385 3.7595 3.2847 32 1 3.6072 6.1291 2.8367 33 1 3.1542 7.6175 -1.6747 34 1 4.8847 7.9871 -1.4813 35 1 4.3592 6.3109 -1.7694 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343874719.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:57 Heat of formation + Delta-G solvation = -44.180731 kcal Electronic energy + Delta-G solvation = -20057.017885 eV Core-core repulsion = 16953.947448 eV Total energy + Delta-G solvation = -3103.070437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.28149 -38.91202 -36.45370 -35.31631 -33.21500 -31.24982 -30.45327 -28.40833 -27.45305 -25.01191 -23.45197 -22.65575 -20.57571 -19.78686 -17.84370 -17.35774 -16.81495 -15.99066 -15.55706 -14.92930 -14.76396 -14.64900 -14.38175 -14.08860 -13.58978 -13.05046 -12.77724 -12.72548 -12.49499 -12.30924 -12.13224 -11.98564 -11.78698 -11.63517 -11.38073 -11.19310 -11.01015 -10.67284 -10.36998 -10.11048 -9.72186 -9.44203 -9.25395 -8.94803 -8.29779 -7.99747 -7.73005 -6.53858 -4.56694 0.62593 2.25055 2.36126 2.65799 3.07221 3.12363 3.16230 3.27961 3.69480 3.83254 4.07800 4.47351 4.80006 5.17571 5.33663 5.55375 5.62863 5.66112 5.74495 5.75445 5.82066 5.94476 6.12095 6.16395 6.24885 6.35782 6.48893 6.51404 6.72952 6.74609 6.87295 7.23652 7.42593 7.57845 7.81602 8.02007 8.43528 8.77218 9.02993 10.49445 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.012624 B = 0.009415 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.383594 B = 2973.277929 C = 4622.821380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.595 5.595 4 C 0.225 3.775 5 C -0.539 4.539 6 H 0.071 0.929 7 C 0.076 3.924 8 N -0.872 5.872 9 Si 0.889 3.111 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.268 1.268 13 C 0.586 3.414 14 O -0.560 6.560 15 C -0.258 4.258 16 C -0.104 4.104 17 C -0.087 4.087 18 C -0.380 4.380 19 C 0.428 3.572 20 C -0.201 4.201 21 O -0.475 6.475 22 S 0.419 5.581 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.274 0.726 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.936 0.858 0.956 2.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.008 4.008 3 N -0.325 5.325 4 C 0.103 3.897 5 C -0.582 4.582 6 H 0.089 0.911 7 C -0.131 4.131 8 N -0.507 5.507 9 Si 0.715 3.285 10 H -0.196 1.196 11 H -0.205 1.205 12 H -0.193 1.193 13 C 0.374 3.626 14 O -0.442 6.442 15 C -0.381 4.381 16 C -0.137 4.137 17 C -0.121 4.121 18 C -0.499 4.499 19 C 0.308 3.692 20 C -0.258 4.258 21 O -0.354 6.354 22 S 0.699 5.301 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.158 0.842 32 H 0.150 0.850 33 H 0.117 0.883 34 H 0.105 0.895 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.919 0.896 0.084 2.119 hybrid contribution 0.997 0.177 1.002 1.425 sum -0.922 1.073 1.087 1.784 Atomic orbital electron populations 1.22130 0.96524 1.01533 1.02144 1.21307 0.93627 0.82847 1.02986 1.48081 1.62938 1.13990 1.07518 1.19697 0.98361 0.90945 0.80724 1.21552 0.94151 1.34925 1.07525 0.91065 1.24937 0.98302 0.94257 0.95569 1.69896 1.33979 1.32223 1.14646 0.86632 0.84075 0.79183 0.78587 1.19562 1.20510 1.19289 1.17164 0.77031 0.84688 0.83690 1.90688 1.56176 1.65428 1.31864 1.25148 1.13740 0.99602 0.99634 1.20179 1.01800 0.92952 0.98781 1.20309 1.00330 0.96092 0.95320 1.26877 1.16406 1.04746 1.01852 1.21500 0.71769 0.84798 0.91167 1.22250 1.04713 1.04775 0.94101 1.90492 1.39805 1.43880 1.61194 1.86754 1.50707 0.93234 0.99437 0.92396 0.92086 0.92751 0.90316 0.90344 0.92462 0.94351 0.91629 0.84217 0.85009 0.88309 0.89507 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 10.24 37.16 0.38 -2.02 16 2 C 0.12 1.96 6.16 -4.05 -0.02 1.94 16 3 N -0.59 -11.93 2.48 -176.39 -0.44 -12.36 16 4 C 0.23 4.75 4.76 -5.19 -0.02 4.73 16 5 C -0.54 -12.18 6.96 -34.44 -0.24 -12.42 16 6 H 0.07 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.08 1.72 5.01 -17.82 -0.09 1.63 16 8 N -0.87 -20.00 13.29 55.43 0.74 -19.27 16 9 Si 0.89 18.12 29.54 -169.99 -5.02 13.10 16 10 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 11 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 12 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 13 C 0.59 12.52 7.58 -12.58 -0.10 12.42 16 14 O -0.56 -12.82 16.33 5.27 0.09 -12.74 16 15 C -0.26 -5.22 6.25 -36.46 -0.23 -5.45 16 16 C -0.10 -1.93 9.89 -40.71 -0.40 -2.33 16 17 C -0.09 -1.57 9.89 -40.59 -0.40 -1.97 16 18 C -0.38 -7.01 6.40 -36.79 -0.24 -7.24 16 19 C 0.43 7.50 7.22 -31.07 -0.22 7.28 16 20 C -0.20 -2.87 10.00 36.01 0.36 -2.51 16 21 O -0.48 -9.29 17.56 5.49 0.10 -9.19 16 22 S 0.42 8.12 14.95 -107.50 -1.61 6.52 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.08 1.27 8.11 -51.93 -0.42 0.85 16 27 H 0.08 1.36 7.25 -51.93 -0.38 0.98 16 28 H 0.06 1.24 8.01 -51.93 -0.42 0.82 16 29 H 0.04 0.84 4.48 -22.15 -0.10 0.75 16 30 H 0.27 6.02 8.31 -40.82 -0.34 5.68 16 31 H 0.14 2.43 8.05 -52.49 -0.42 2.00 16 32 H 0.13 2.18 8.04 -52.49 -0.42 1.76 16 33 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.31 7.36 -51.93 -0.38 0.93 16 LS Contribution 313.96 15.07 4.73 4.73 Total: -1.00 -26.16 313.96 -6.84 -33.00 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -4.20 Total: 2.17 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -1.23 Total: -5.95 kcal Atomic # 7 Polarization: -31.93 SS G_CDS: 0.30 Total: -31.63 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: 0.18 Total: -21.93 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.02 Total: 13.10 kcal Atomic # 16 Polarization: 8.12 SS G_CDS: -1.61 Total: 6.52 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -26.16 -6.84 -33.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343874719.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.184 kcal (2) G-P(sol) polarization free energy of solvation -26.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds