Wall clock time and date at job start Tue Mar 31 2020 06:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47223 * 2 1 4 4 C 1.46504 * 120.00085 * 274.94939 * 3 2 1 5 5 C 1.50698 * 109.47164 * 262.30903 * 4 3 2 6 6 H 1.08005 * 119.99693 * 359.97438 * 5 4 3 7 7 C 1.37869 * 120.00264 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99995 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00256 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46902 * 60.00205 * 9 7 5 11 11 H 1.48495 * 109.47289 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47155 * 300.00657 * 9 7 5 13 13 C 1.34775 * 120.00356 * 94.94590 * 3 2 1 14 14 O 1.21604 * 119.99943 * 2.04917 * 13 3 2 15 15 C 1.47287 * 120.00139 * 182.05321 * 13 3 2 16 16 C 1.36705 * 125.13799 * 172.22045 * 15 13 3 17 17 C 1.36654 * 114.78472 * 179.97438 * 16 15 13 18 18 C 1.37028 * 114.68260 * 359.97438 * 17 16 15 19 19 C 1.46288 * 125.17836 * 179.97438 * 18 17 16 20 20 C 1.50700 * 120.00169 * 180.02562 * 19 18 17 21 21 O 1.21354 * 119.99701 * 359.97438 * 19 18 17 22 22 S 1.75828 * 109.64363 * 359.97438 * 18 17 16 23 23 H 1.09000 * 109.47422 * 59.99952 * 1 2 3 24 24 H 1.08998 * 109.47348 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47538 * 300.00458 * 1 2 3 26 26 H 1.08996 * 109.47075 * 239.99640 * 2 1 3 27 27 H 1.08998 * 109.47006 * 119.99401 * 2 1 3 28 28 H 1.09007 * 109.46643 * 22.30647 * 4 3 2 29 29 H 1.08997 * 109.47517 * 142.30643 * 4 3 2 30 30 H 0.96997 * 119.99751 * 179.97438 * 8 7 5 31 31 H 1.07991 * 122.60975 * 0.23023 * 16 15 13 32 32 H 1.07994 * 122.65600 * 180.02562 * 17 16 15 33 33 H 1.09006 * 109.46995 * 89.99486 * 20 19 18 34 34 H 1.09001 * 109.47022 * 209.99434 * 20 19 18 35 35 H 1.08998 * 109.46988 * 330.00053 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1593 2.1083 -1.2640 5 6 3.5928 2.0425 -1.7242 6 1 4.3256 1.5125 -1.1339 7 6 3.9688 2.6589 -2.8987 8 7 3.0765 3.3048 -3.6173 9 14 5.7459 2.5780 -3.4687 10 1 6.1381 1.1595 -3.6666 11 1 5.8888 3.3149 -4.7500 12 1 6.6236 3.1957 -2.4424 13 6 2.3378 1.9830 1.1628 14 8 2.2563 1.3676 2.2084 15 6 2.7857 3.3862 1.1671 16 6 2.9903 4.1433 2.2868 17 6 3.4072 5.4221 2.0452 18 6 3.5524 5.7358 0.7193 19 6 3.9844 7.0346 0.2029 20 6 4.1039 7.2526 -1.2835 21 8 4.2457 7.9366 0.9714 22 16 3.1404 4.3397 -0.2670 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 1.5147 1.6555 -2.0175 29 1 1.8719 3.1496 -1.1183 30 1 3.3412 3.7388 -4.4434 31 1 2.8385 3.7595 3.2847 32 1 3.6072 6.1291 2.8367 33 1 3.1542 7.6175 -1.6747 34 1 4.8847 7.9871 -1.4813 35 1 4.3592 6.3109 -1.7694 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343874719.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:57 Heat of formation + Delta-G solvation = -57.302327 kcal Electronic energy + Delta-G solvation = -20057.586880 eV Core-core repulsion = 16953.947448 eV Total energy + Delta-G solvation = -3103.639432 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.88996 -40.35870 -37.95608 -36.95131 -34.87470 -32.69735 -31.77774 -29.83412 -29.10011 -26.45937 -25.12637 -24.07333 -21.99693 -21.28890 -19.35298 -18.97883 -18.50634 -17.53426 -17.04973 -16.41668 -16.39568 -16.07740 -15.91219 -15.51390 -15.01380 -14.49660 -14.37165 -14.22095 -14.09986 -13.73325 -13.40745 -13.30436 -13.18610 -13.03016 -12.83019 -12.70427 -12.61009 -12.19273 -11.84936 -11.79057 -11.19986 -11.06972 -10.76244 -10.65687 -9.87485 -9.54556 -9.28074 -8.25850 -6.33688 -0.87524 0.72125 0.89352 1.14834 1.44810 1.49372 1.53353 1.80317 2.14976 2.24727 2.41504 3.05982 3.14229 3.62451 4.11337 4.22106 4.33662 4.37751 4.44880 4.51876 4.54878 4.56278 4.68406 4.88473 4.96527 5.00180 5.03621 5.09162 5.27174 5.30545 5.40515 5.60132 5.74254 5.86583 6.37787 6.42625 6.68633 7.12933 7.29584 8.77517 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.012624 B = 0.009415 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.383594 B = 2973.277929 C = 4622.821380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.107 3.893 3 N -0.595 5.595 4 C 0.234 3.766 5 C -0.549 4.549 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.887 5.887 9 Si 0.927 3.073 10 H -0.276 1.276 11 H -0.272 1.272 12 H -0.270 1.270 13 C 0.579 3.421 14 O -0.583 6.583 15 C -0.281 4.281 16 C -0.095 4.095 17 C -0.088 4.088 18 C -0.377 4.377 19 C 0.429 3.571 20 C -0.197 4.197 21 O -0.496 6.496 22 S 0.409 5.591 23 H 0.057 0.943 24 H 0.091 0.909 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.039 0.961 30 H 0.277 0.723 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.842 1.437 0.539 2.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.015 4.015 3 N -0.325 5.325 4 C 0.111 3.889 5 C -0.591 4.591 6 H 0.073 0.927 7 C -0.150 4.150 8 N -0.523 5.523 9 Si 0.752 3.248 10 H -0.201 1.201 11 H -0.197 1.197 12 H -0.195 1.195 13 C 0.368 3.632 14 O -0.467 6.467 15 C -0.404 4.404 16 C -0.129 4.129 17 C -0.121 4.121 18 C -0.496 4.496 19 C 0.309 3.691 20 C -0.254 4.254 21 O -0.376 6.376 22 S 0.688 5.312 23 H 0.076 0.924 24 H 0.110 0.890 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.169 0.831 32 H 0.167 0.833 33 H 0.138 0.862 34 H 0.125 0.875 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.834 1.449 -0.364 2.365 hybrid contribution 0.961 0.032 1.196 1.534 sum -0.872 1.481 0.832 1.910 Atomic orbital electron populations 1.22046 0.94370 1.03368 1.01503 1.21541 0.95414 0.81393 1.03110 1.48189 1.62443 1.14949 1.06877 1.19534 0.97520 0.91082 0.80809 1.21492 0.94417 1.35372 1.07791 0.92713 1.25272 1.00251 0.93958 0.95480 1.69925 1.34845 1.32595 1.14931 0.86060 0.81540 0.78770 0.78440 1.20111 1.19692 1.19482 1.17375 0.76944 0.85163 0.83693 1.90659 1.57484 1.66102 1.32476 1.25227 1.15105 0.99564 1.00526 1.20376 1.00582 0.92961 0.98960 1.20516 0.99795 0.96083 0.95751 1.27097 1.15570 1.05017 1.01898 1.21900 0.70749 0.83853 0.92552 1.22277 1.06574 1.05182 0.91357 1.90491 1.40808 1.44234 1.62053 1.86696 1.51427 0.93629 0.99436 0.92415 0.89045 0.93877 0.89517 0.90827 0.93111 0.94411 0.91312 0.83113 0.83334 0.86226 0.87497 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.31 10.24 71.98 0.74 -3.57 16 2 C 0.11 3.60 6.16 86.38 0.53 4.14 16 3 N -0.59 -23.86 2.48 -830.23 -2.06 -25.92 16 4 C 0.23 9.83 4.76 85.63 0.41 10.24 16 5 C -0.55 -24.73 6.96 25.60 0.18 -24.55 16 6 H 0.05 2.62 7.81 -2.91 -0.02 2.59 16 7 C 0.06 2.48 5.01 84.65 0.42 2.91 16 8 N -0.89 -39.87 13.29 21.44 0.28 -39.59 16 9 Si 0.93 36.24 29.54 68.60 2.03 38.27 16 10 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 11 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 12 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 13 C 0.58 24.82 7.58 86.62 0.66 25.47 16 14 O -0.58 -26.83 16.33 -4.04 -0.07 -26.90 16 15 C -0.28 -11.31 6.25 24.29 0.15 -11.16 16 16 C -0.09 -3.44 9.89 21.54 0.21 -3.23 16 17 C -0.09 -3.05 9.89 21.61 0.21 -2.84 16 18 C -0.38 -13.37 6.40 24.08 0.15 -13.22 16 19 C 0.43 14.21 7.22 27.78 0.20 14.41 16 20 C -0.20 -5.14 10.00 71.24 0.71 -4.43 16 21 O -0.50 -18.47 17.56 -3.26 -0.06 -18.53 16 22 S 0.41 15.60 14.95 -56.49 -0.84 14.75 16 23 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.09 2.74 8.11 -2.39 -0.02 2.72 16 27 H 0.07 2.54 7.25 -2.39 -0.02 2.52 16 28 H 0.05 2.19 8.01 -2.38 -0.02 2.17 16 29 H 0.04 1.66 4.48 -21.32 -0.10 1.56 16 30 H 0.28 11.84 8.31 -92.71 -0.77 11.07 16 31 H 0.15 5.08 8.05 -2.91 -0.02 5.06 16 32 H 0.15 4.63 8.04 -2.91 -0.02 4.60 16 33 H 0.12 2.65 8.14 -2.38 -0.02 2.63 16 34 H 0.11 2.37 8.14 -2.39 -0.02 2.36 16 35 H 0.08 2.30 7.36 -2.39 -0.02 2.28 16 Total: -1.00 -53.90 313.96 4.88 -49.02 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 1.01 Total: 14.71 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 4.58 Total: -5.82 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: -1.77 Total: -65.51 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: -0.12 Total: -45.43 kcal Atomic # 14 Polarization: 36.24 SS G_CDS: 2.03 Total: 38.27 kcal Atomic # 16 Polarization: 15.60 SS G_CDS: -0.84 Total: 14.75 kcal Total: -53.90 4.88 -49.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343874719.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.280 kcal (2) G-P(sol) polarization free energy of solvation -53.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds