Wall clock time and date at job start Tue Mar 31 2020 05:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99940 * 2 1 4 4 H 1.48496 * 109.47033 * 269.99396 * 3 2 1 5 5 H 1.48499 * 109.47398 * 29.99295 * 3 2 1 6 6 H 1.48498 * 109.47199 * 149.99721 * 3 2 1 7 7 C 1.37876 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00256 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99951 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46988 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47283 * 180.02562 * 10 9 7 12 12 S 1.81393 * 109.47265 * 179.97438 * 11 10 9 13 13 O 1.42099 * 109.47149 * 70.94156 * 12 11 10 14 14 C 1.76199 * 103.00104 * 179.97438 * 12 11 10 15 15 C 1.38385 * 119.93031 * 89.99637 * 14 12 11 16 16 C 1.38338 * 120.29391 * 180.02562 * 15 14 12 17 17 C 1.37979 * 120.14357 * 0.26057 * 16 15 14 18 18 C 1.39557 * 119.85101 * 359.44757 * 17 16 15 19 19 C 1.47847 * 120.13971 * 180.29942 * 18 17 16 20 20 N 1.34771 * 120.00442 * 0.27452 * 19 18 17 21 21 O 1.21558 * 119.99590 * 180.26936 * 19 18 17 22 22 C 1.37934 * 119.92804 * 269.97875 * 14 12 11 23 23 H 0.96995 * 119.99980 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47205 * 60.00047 * 9 7 2 25 25 H 1.09003 * 109.47254 * 299.99891 * 9 7 2 26 26 H 1.09000 * 109.47727 * 59.99789 * 10 9 7 27 27 H 1.09008 * 109.46850 * 299.99453 * 10 9 7 28 28 H 1.09000 * 109.47024 * 59.99220 * 11 10 9 29 29 H 1.08995 * 109.46655 * 299.99811 * 11 10 9 30 30 H 1.08001 * 119.85075 * 359.97438 * 15 14 12 31 31 H 1.08002 * 119.92371 * 179.97438 * 16 15 14 32 32 H 1.08004 * 120.06871 * 179.70410 * 17 16 15 33 33 H 0.97006 * 120.00069 * 359.97438 * 20 19 18 34 34 H 0.96999 * 120.00473 * 180.02562 * 20 19 18 35 35 H 1.08004 * 120.07141 * 0.02562 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4803 -4.9872 0.0012 12 16 2.6590 -6.3659 0.0019 13 8 3.2984 -6.4417 1.2687 14 6 1.6117 -7.7828 0.0019 15 6 1.2017 -8.3383 -1.1975 16 6 0.3790 -9.4504 -1.2063 17 6 -0.0425 -10.0100 -0.0176 18 6 0.3723 -9.4584 1.1954 19 6 -0.0702 -10.0568 2.4729 20 7 -0.8713 -11.1405 2.4678 21 8 0.2887 -9.5713 3.5279 22 6 1.2026 -8.3362 1.1972 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 2.8713 -3.6040 0.8922 27 1 2.8725 -3.6047 -0.8878 28 1 0.8545 -5.0450 -0.8894 29 1 0.8527 -5.0447 0.8905 30 1 1.5248 -7.9011 -2.1307 31 1 0.0623 -9.8788 -2.1458 32 1 -0.6887 -10.8753 -0.0259 33 1 -1.1580 -11.5278 1.6258 34 1 -1.1619 -11.5329 3.3059 35 1 1.5231 -7.9017 2.1326 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357145712.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:17 Heat of formation + Delta-G solvation = -66.814958 kcal Electronic energy + Delta-G solvation = -18531.481534 eV Core-core repulsion = 15427.429603 eV Total energy + Delta-G solvation = -3104.051931 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.30020 -38.35197 -35.53530 -34.41464 -34.19397 -32.00734 -31.32362 -31.26427 -27.48202 -24.50790 -23.58268 -22.96616 -21.11591 -20.25555 -18.82374 -17.44794 -16.99283 -16.39577 -16.28823 -15.59558 -15.17740 -15.04011 -14.61498 -14.50406 -14.27335 -14.20449 -13.95619 -12.86604 -12.55614 -12.40953 -12.20288 -11.95052 -11.69614 -11.32641 -10.85357 -10.77862 -10.66995 -10.41246 -10.15998 -10.06224 -9.78341 -9.57751 -9.30920 -9.26670 -9.07539 -8.34608 -8.12739 -5.99417 -4.02161 0.43898 0.87095 1.91293 2.51476 2.89194 3.15807 3.33030 3.39413 3.43577 3.53652 4.04567 4.42204 4.47052 4.48264 4.63051 4.94239 5.18108 5.30722 5.36297 5.52300 5.58882 5.64041 5.90563 5.92820 6.00657 6.20983 6.39686 6.52306 6.53482 6.71387 6.96173 7.05306 7.67167 7.79934 7.93049 8.00092 8.41491 9.04937 9.62066 11.11850 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.026984 B = 0.003209 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.401259 B = 8723.609023 C = 8938.176002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.094 4.094 11 C -0.438 4.438 12 S 1.314 4.686 13 O -0.851 6.851 14 C -0.463 4.463 15 C -0.017 4.017 16 C -0.145 4.145 17 C -0.060 4.060 18 C -0.158 4.158 19 C 0.562 3.438 20 N -0.853 5.853 21 O -0.534 6.534 22 C 0.007 3.993 23 H 0.260 0.740 24 H 0.019 0.981 25 H 0.015 0.985 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.112 0.888 29 H 0.083 0.917 30 H 0.144 0.856 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.400 0.600 34 H 0.405 0.595 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.019 -24.442 -7.190 25.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.133 4.133 11 C -0.576 4.576 12 S 1.512 4.488 13 O -0.846 6.846 14 C -0.557 4.557 15 C -0.037 4.037 16 C -0.164 4.164 17 C -0.079 4.079 18 C -0.163 4.163 19 C 0.348 3.652 20 N -0.417 5.417 21 O -0.411 6.411 22 C -0.013 4.013 23 H 0.070 0.930 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.130 0.870 29 H 0.102 0.898 30 H 0.162 0.838 31 H 0.153 0.847 32 H 0.145 0.855 33 H 0.229 0.771 34 H 0.236 0.764 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.152 -23.904 -6.562 24.789 hybrid contribution -1.608 0.351 1.701 2.367 sum -1.457 -23.553 -4.861 24.094 Atomic orbital electron populations 1.69966 1.06097 1.26624 1.50865 1.25032 0.94857 0.99313 0.95291 0.86580 0.79895 0.83373 0.78096 1.20586 1.21268 1.19815 1.21278 0.93152 0.91030 1.50617 0.92501 1.19090 0.93813 0.90856 0.97393 1.21328 0.99012 0.91896 1.01032 1.27783 1.11854 1.10554 1.07420 1.69432 0.87027 0.82658 1.09644 1.93118 1.63682 1.83340 1.44505 1.28186 1.14046 1.17027 0.96453 1.21154 0.92260 0.93239 0.97020 1.21228 0.99626 0.97505 0.98033 1.21401 0.96540 0.97941 0.91979 1.19976 1.03711 0.99670 0.92893 1.18322 0.77905 0.79928 0.89029 1.43728 1.53185 1.32235 1.12563 1.90863 1.55941 1.61570 1.32683 1.21334 0.89585 0.91588 0.98808 0.93000 0.96257 0.96709 0.92820 0.92011 0.86969 0.89820 0.83814 0.84688 0.85526 0.77086 0.76391 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.70 4.97 -27.88 -0.14 0.56 16 10 C -0.09 -1.89 5.16 -26.73 -0.14 -2.03 16 11 C -0.44 -7.07 5.88 37.16 0.22 -6.85 16 12 S 1.31 17.08 13.54 -107.50 -1.46 15.62 16 13 O -0.85 -16.63 16.89 -35.23 -0.59 -17.22 16 14 C -0.46 -5.62 5.61 -39.64 -0.22 -5.84 16 15 C -0.02 -0.15 9.75 -39.49 -0.38 -0.53 16 16 C -0.15 -1.05 10.03 -39.64 -0.40 -1.45 16 17 C -0.06 -0.48 9.54 -39.18 -0.37 -0.86 16 18 C -0.16 -1.92 5.87 -104.97 -0.62 -2.54 16 19 C 0.56 7.14 8.05 -12.33 -0.10 7.04 16 20 N -0.85 -6.18 8.82 30.53 0.27 -5.91 16 21 O -0.53 -9.41 17.18 5.32 0.09 -9.31 16 22 C 0.01 0.10 8.99 -39.19 -0.35 -0.25 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 28 H 0.11 1.52 8.14 -51.92 -0.42 1.10 16 29 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 31 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 32 H 0.13 0.53 6.41 -52.48 -0.34 0.19 16 33 H 0.40 1.51 6.86 -40.82 -0.28 1.23 16 34 H 0.40 2.42 8.93 -40.82 -0.36 2.06 16 35 H 0.14 2.54 7.04 -52.48 -0.37 2.17 16 LS Contribution 319.26 15.07 4.81 4.81 Total: -1.00 -40.84 319.26 -8.35 -49.20 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -4.27 Total: -1.09 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: -2.92 Total: -26.43 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 1.01 Total: -32.37 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.50 Total: -26.54 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 17.08 SS G_CDS: -1.46 Total: 15.62 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -40.84 -8.35 -49.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357145712.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.618 kcal (2) G-P(sol) polarization free energy of solvation -40.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds