Wall clock time and date at job start Tue Mar 31 2020 06:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47150 * 2 1 4 4 N 1.46501 * 109.47235 * 240.00221 * 2 1 3 5 5 C 1.34777 * 120.00007 * 84.99440 * 4 2 1 6 6 O 1.21690 * 119.99829 * 0.02562 * 5 4 2 7 7 C 1.46373 * 119.99937 * 180.02562 * 5 4 2 8 8 H 1.07998 * 120.00178 * 0.02562 * 7 5 4 9 9 C 1.40052 * 119.99815 * 180.02562 * 7 5 4 10 10 N 1.30669 * 119.99984 * 359.97438 * 9 7 5 11 11 Si 1.86801 * 119.99894 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47177 * 89.99882 * 11 9 7 13 13 H 1.48501 * 109.46911 * 209.99703 * 11 9 7 14 14 H 1.48502 * 109.46948 * 329.99406 * 11 9 7 15 15 C 1.50700 * 109.47268 * 120.00265 * 2 1 3 16 16 C 1.38234 * 120.00260 * 259.99926 * 15 2 1 17 17 C 1.38234 * 120.00240 * 179.97438 * 16 15 2 18 18 C 1.38233 * 120.00037 * 0.26327 * 17 16 15 19 19 S 1.76195 * 120.00186 * 179.72636 * 18 17 16 20 20 C 1.81391 * 103.00415 * 89.99368 * 19 18 17 21 21 O 1.42102 * 103.00065 * 203.84724 * 19 18 17 22 22 C 1.38238 * 119.99752 * 359.47832 * 18 17 16 23 23 C 1.38234 * 120.00033 * 0.49775 * 22 18 17 24 24 H 1.08996 * 109.47446 * 59.99823 * 1 2 3 25 25 H 1.09000 * 109.47150 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47006 * 299.99430 * 1 2 3 27 27 H 0.97001 * 119.99982 * 265.00657 * 4 2 1 28 28 H 0.97002 * 119.99758 * 180.02562 * 10 9 7 29 29 H 1.07999 * 119.99751 * 359.97438 * 16 15 2 30 30 H 1.08002 * 119.99744 * 179.97438 * 17 16 15 31 31 H 1.09007 * 109.47095 * 59.99762 * 20 19 18 32 32 H 1.08999 * 109.47441 * 180.02562 * 20 19 18 33 33 H 1.09007 * 109.47244 * 300.00245 * 20 19 18 34 34 H 1.07999 * 119.99934 * 180.25938 * 22 18 17 35 35 H 1.08001 * 120.00294 * 179.76453 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8579 1.1626 -2.4116 7 6 2.6344 -0.7083 -3.5524 8 1 2.8906 -1.7564 -3.5042 9 6 2.7685 -0.0095 -4.7587 10 7 2.4581 1.2585 -4.8172 11 14 3.3899 -0.8903 -6.2843 12 1 2.2391 -1.4604 -7.0299 13 1 4.1135 0.0734 -7.1521 14 1 4.3111 -1.9840 -5.8837 15 6 2.0324 -0.7105 1.2304 16 6 2.4588 0.0193 2.3243 17 6 2.9191 -0.6324 3.4531 18 6 2.9581 -2.0138 3.4861 19 16 3.5516 -2.8444 4.9222 20 6 2.0498 -3.0672 5.9148 21 8 3.9735 -4.1021 4.4127 22 6 2.5267 -2.7437 2.3942 23 6 2.0659 -2.0920 1.2656 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 2.2490 -1.6318 -1.1527 28 1 2.5507 1.7424 -5.6528 29 1 2.4323 1.0986 2.2969 30 1 3.2526 -0.0622 4.3075 31 1 1.3289 -3.6625 5.3544 32 1 2.3007 -3.5794 6.8436 33 1 1.6172 -2.0930 6.1430 34 1 2.5532 -3.8230 2.4216 35 1 1.7324 -2.6621 0.4111 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357635652.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:51 Heat of formation + Delta-G solvation = -55.605035 kcal Electronic energy + Delta-G solvation = -19080.629977 eV Core-core repulsion = 15977.064145 eV Total energy + Delta-G solvation = -3103.565832 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.49141 -37.31521 -35.85698 -34.42906 -32.43984 -31.07787 -30.60809 -29.16174 -28.74058 -26.13760 -23.73841 -22.79461 -21.00465 -19.28808 -18.26932 -17.50033 -16.58486 -15.61528 -15.42373 -15.11197 -14.94491 -14.39945 -14.10444 -13.82419 -13.62715 -13.46802 -13.30966 -12.99040 -12.56348 -12.37312 -12.36544 -11.99334 -11.66856 -11.39853 -11.23453 -11.00061 -10.95516 -10.56779 -10.46412 -10.28139 -10.19513 -9.02759 -8.91858 -8.87174 -8.49363 -7.65285 -7.58663 -6.20987 -4.66619 0.88922 1.42184 1.77548 2.55427 3.13247 3.20266 3.23884 3.60179 3.84331 4.09481 4.55980 4.71140 4.89647 4.94040 4.95966 4.99707 5.04005 5.42815 5.54882 5.67350 5.71125 5.73520 5.90806 6.00195 6.05416 6.11286 6.25064 6.33345 6.39712 6.69837 6.79145 6.98014 7.41493 7.87802 8.04967 8.29942 9.00425 9.48114 10.56921 10.75108 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.030369 B = 0.003549 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.780574 B = 7887.710099 C = 8437.260365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.182 3.818 3 H 0.088 0.912 4 N -0.761 5.761 5 C 0.556 3.444 6 O -0.579 6.579 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.088 3.912 10 N -0.767 5.767 11 Si 0.908 3.092 12 H -0.272 1.272 13 H -0.279 1.279 14 H -0.265 1.265 15 C -0.034 4.034 16 C -0.131 4.131 17 C -0.044 4.044 18 C -0.472 4.472 19 S 1.331 4.669 20 C -0.499 4.499 21 O -0.861 6.861 22 C -0.051 4.051 23 C -0.127 4.127 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.380 0.620 28 H 0.268 0.732 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.123 0.877 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.531 -3.933 20.693 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.076 3.924 3 H 0.106 0.894 4 N -0.417 5.417 5 C 0.361 3.639 6 O -0.462 6.462 7 C -0.582 4.582 8 H 0.085 0.915 9 C -0.132 4.132 10 N -0.396 5.396 11 Si 0.732 3.268 12 H -0.197 1.197 13 H -0.204 1.204 14 H -0.189 1.189 15 C -0.035 4.035 16 C -0.151 4.151 17 C -0.063 4.063 18 C -0.569 4.569 19 S 1.528 4.472 20 C -0.656 4.656 21 O -0.856 6.856 22 C -0.070 4.070 23 C -0.147 4.147 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.212 0.788 28 H 0.079 0.921 29 H 0.148 0.852 30 H 0.152 0.848 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.141 0.859 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.220 -3.181 20.744 21.022 hybrid contribution -1.354 -2.024 -1.995 3.148 sum -0.133 -5.204 18.749 19.458 Atomic orbital electron populations 1.22151 0.95642 1.01374 1.01918 1.19519 0.93291 0.96939 0.82666 0.89416 1.46323 1.73287 1.12886 1.09199 1.18212 0.77787 0.86406 0.81530 1.90593 1.54853 1.16332 1.84442 1.20881 1.46860 0.97156 0.93327 0.91496 1.25697 0.93307 0.94471 0.99703 1.70016 1.35165 1.08161 1.26252 0.86373 0.79359 0.79808 0.81231 1.19743 1.20415 1.18908 1.20548 0.93446 0.93950 0.95525 1.21185 1.00233 1.00303 0.93369 1.20759 0.95520 0.92179 0.97845 1.27453 1.13886 1.02252 1.13328 1.69328 0.91134 0.96051 0.90656 1.27782 1.18555 1.08104 1.11114 1.93105 1.71994 1.42856 1.77669 1.21042 0.93662 0.99743 0.92571 1.21111 1.00935 0.94334 0.98304 0.91218 0.93241 0.93068 0.78782 0.92095 0.85222 0.84781 0.90109 0.87911 0.87166 0.85859 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.46 37.16 0.35 -2.31 16 2 C 0.18 3.46 2.78 -69.08 -0.19 3.27 16 3 H 0.09 1.84 7.44 -51.93 -0.39 1.45 16 4 N -0.76 -17.05 5.02 -56.34 -0.28 -17.33 16 5 C 0.56 15.72 7.71 -12.99 -0.10 15.62 16 6 O -0.58 -18.43 14.68 5.20 0.08 -18.35 16 7 C -0.55 -15.49 9.54 -35.63 -0.34 -15.83 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 10 N -0.77 -22.96 11.83 55.55 0.66 -22.30 16 11 Si 0.91 20.30 29.56 -169.99 -5.02 15.27 16 12 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 13 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 14 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 15 C -0.03 -0.53 4.95 -104.62 -0.52 -1.05 16 16 C -0.13 -1.69 9.67 -39.58 -0.38 -2.07 16 17 C -0.04 -0.44 9.75 -39.58 -0.39 -0.83 16 18 C -0.47 -5.37 5.61 -39.58 -0.22 -5.59 16 19 S 1.33 10.85 14.19 -107.50 -1.53 9.32 16 20 C -0.50 -3.42 10.70 101.05 1.08 -2.34 16 21 O -0.86 -12.94 16.91 -35.23 -0.60 -13.53 16 22 C -0.05 -0.73 9.44 -39.58 -0.37 -1.10 16 23 C -0.13 -1.94 9.06 -39.58 -0.36 -2.30 16 24 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.38 7.72 6.85 -40.82 -0.28 7.44 16 28 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 29 H 0.13 1.46 8.04 -52.49 -0.42 1.04 16 30 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 31 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.11 0.52 8.14 -51.92 -0.42 0.10 16 34 H 0.12 1.80 7.46 -52.49 -0.39 1.41 16 35 H 0.13 1.87 6.92 -52.49 -0.36 1.51 16 LS Contribution 317.43 15.07 4.78 4.78 Total: -1.00 -39.42 317.43 -7.79 -47.22 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -4.35 Total: 7.07 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -1.54 Total: -12.16 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.37 Total: -39.63 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -0.52 Total: -31.88 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 10.85 SS G_CDS: -1.53 Total: 9.32 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -39.42 -7.79 -47.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357635652.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.386 kcal (2) G-P(sol) polarization free energy of solvation -39.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds