Wall clock time and date at job start Tue Mar 31 2020 06:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47150 * 2 1 4 4 N 1.46501 * 109.47235 * 240.00221 * 2 1 3 5 5 C 1.34777 * 120.00007 * 84.99440 * 4 2 1 6 6 O 1.21690 * 119.99829 * 0.02562 * 5 4 2 7 7 C 1.46373 * 119.99937 * 180.02562 * 5 4 2 8 8 H 1.07998 * 120.00178 * 0.02562 * 7 5 4 9 9 C 1.40052 * 119.99815 * 180.02562 * 7 5 4 10 10 N 1.30669 * 119.99984 * 359.97438 * 9 7 5 11 11 Si 1.86801 * 119.99894 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47177 * 89.99882 * 11 9 7 13 13 H 1.48501 * 109.46911 * 209.99703 * 11 9 7 14 14 H 1.48502 * 109.46948 * 329.99406 * 11 9 7 15 15 C 1.50700 * 109.47268 * 120.00265 * 2 1 3 16 16 C 1.38234 * 120.00260 * 259.99926 * 15 2 1 17 17 C 1.38234 * 120.00240 * 179.97438 * 16 15 2 18 18 C 1.38233 * 120.00037 * 0.26327 * 17 16 15 19 19 S 1.76195 * 120.00186 * 179.72636 * 18 17 16 20 20 C 1.81391 * 103.00415 * 89.99368 * 19 18 17 21 21 O 1.42102 * 103.00065 * 203.84724 * 19 18 17 22 22 C 1.38238 * 119.99752 * 359.47832 * 18 17 16 23 23 C 1.38234 * 120.00033 * 0.49775 * 22 18 17 24 24 H 1.08996 * 109.47446 * 59.99823 * 1 2 3 25 25 H 1.09000 * 109.47150 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47006 * 299.99430 * 1 2 3 27 27 H 0.97001 * 119.99982 * 265.00657 * 4 2 1 28 28 H 0.97002 * 119.99758 * 180.02562 * 10 9 7 29 29 H 1.07999 * 119.99751 * 359.97438 * 16 15 2 30 30 H 1.08002 * 119.99744 * 179.97438 * 17 16 15 31 31 H 1.09007 * 109.47095 * 59.99762 * 20 19 18 32 32 H 1.08999 * 109.47441 * 180.02562 * 20 19 18 33 33 H 1.09007 * 109.47244 * 300.00245 * 20 19 18 34 34 H 1.07999 * 119.99934 * 180.25938 * 22 18 17 35 35 H 1.08001 * 120.00294 * 179.76453 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8579 1.1626 -2.4116 7 6 2.6344 -0.7083 -3.5524 8 1 2.8906 -1.7564 -3.5042 9 6 2.7685 -0.0095 -4.7587 10 7 2.4581 1.2585 -4.8172 11 14 3.3899 -0.8903 -6.2843 12 1 2.2391 -1.4604 -7.0299 13 1 4.1135 0.0734 -7.1521 14 1 4.3111 -1.9840 -5.8837 15 6 2.0324 -0.7105 1.2304 16 6 2.4588 0.0193 2.3243 17 6 2.9191 -0.6324 3.4531 18 6 2.9581 -2.0138 3.4861 19 16 3.5516 -2.8444 4.9222 20 6 2.0498 -3.0672 5.9148 21 8 3.9735 -4.1021 4.4127 22 6 2.5267 -2.7437 2.3942 23 6 2.0659 -2.0920 1.2656 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 2.2490 -1.6318 -1.1527 28 1 2.5507 1.7424 -5.6528 29 1 2.4323 1.0986 2.2969 30 1 3.2526 -0.0622 4.3075 31 1 1.3289 -3.6625 5.3544 32 1 2.3007 -3.5794 6.8436 33 1 1.6172 -2.0930 6.1430 34 1 2.5532 -3.8230 2.4216 35 1 1.7324 -2.6621 0.4111 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357635652.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:50 Heat of formation + Delta-G solvation = -86.030544 kcal Electronic energy + Delta-G solvation = -19081.949326 eV Core-core repulsion = 15977.064145 eV Total energy + Delta-G solvation = -3104.885181 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.72413 -39.17867 -36.85606 -36.12850 -34.58505 -32.45102 -31.86593 -30.36177 -29.52122 -28.23643 -25.05842 -23.88209 -22.54326 -21.04883 -19.56074 -18.94880 -17.71545 -17.47237 -16.81722 -16.43412 -15.82482 -15.72664 -15.56445 -15.15204 -14.98616 -14.60434 -14.32358 -14.25443 -14.23328 -13.58082 -13.48124 -13.39742 -13.04799 -12.89163 -12.78293 -12.66290 -12.56427 -12.20714 -12.02782 -11.91817 -11.25270 -10.96599 -10.12893 -9.93565 -9.85791 -9.55693 -9.30156 -8.32599 -6.89806 -0.08958 0.40231 1.00711 1.37012 1.38306 1.53523 1.82444 2.21569 2.43609 2.62187 3.03236 3.08789 3.55944 3.65913 3.82649 4.04354 4.28016 4.35617 4.40328 4.45951 4.51727 4.61144 4.73191 4.81776 4.88823 5.06158 5.16436 5.21593 5.26255 5.27723 5.30355 5.56853 5.83392 5.96234 6.15917 6.24957 6.83140 7.46622 8.44873 8.63369 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.030369 B = 0.003549 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.780574 B = 7887.710099 C = 8437.260365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.182 3.818 3 H 0.063 0.937 4 N -0.752 5.752 5 C 0.542 3.458 6 O -0.625 6.625 7 C -0.578 4.578 8 H 0.081 0.919 9 C 0.031 3.969 10 N -0.818 5.818 11 Si 0.997 3.003 12 H -0.261 1.261 13 H -0.270 1.270 14 H -0.253 1.253 15 C -0.055 4.055 16 C -0.137 4.137 17 C -0.024 4.024 18 C -0.473 4.473 19 S 1.406 4.594 20 C -0.497 4.497 21 O -0.929 6.929 22 C -0.072 4.072 23 C -0.141 4.141 24 H 0.031 0.969 25 H 0.057 0.943 26 H 0.083 0.917 27 H 0.389 0.611 28 H 0.275 0.725 29 H 0.146 0.854 30 H 0.197 0.803 31 H 0.058 0.942 32 H 0.122 0.878 33 H 0.143 0.857 34 H 0.110 0.890 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.279 -4.412 23.019 23.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.077 3.923 3 H 0.081 0.919 4 N -0.406 5.406 5 C 0.347 3.653 6 O -0.512 6.512 7 C -0.614 4.614 8 H 0.099 0.901 9 C -0.185 4.185 10 N -0.447 5.447 11 Si 0.816 3.184 12 H -0.186 1.186 13 H -0.194 1.194 14 H -0.177 1.177 15 C -0.056 4.056 16 C -0.156 4.156 17 C -0.043 4.043 18 C -0.569 4.569 19 S 1.604 4.396 20 C -0.655 4.655 21 O -0.925 6.925 22 C -0.092 4.092 23 C -0.161 4.161 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.223 0.777 28 H 0.085 0.915 29 H 0.164 0.836 30 H 0.214 0.786 31 H 0.078 0.922 32 H 0.141 0.859 33 H 0.161 0.839 34 H 0.128 0.872 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.968 -3.690 23.093 23.468 hybrid contribution -1.628 -1.881 -2.481 3.513 sum 0.340 -5.571 20.612 21.354 Atomic orbital electron populations 1.22040 0.94721 1.01804 1.01581 1.19570 0.94110 0.95711 0.82902 0.91930 1.46034 1.72249 1.13194 1.09159 1.18508 0.77540 0.86083 0.83209 1.90542 1.56858 1.18202 1.85633 1.21418 1.47559 0.98095 0.94341 0.90077 1.26923 0.92792 0.95177 1.03562 1.70167 1.36384 1.10370 1.27812 0.85038 0.79025 0.78518 0.75824 1.18581 1.19421 1.17652 1.20246 0.96203 0.93996 0.95164 1.21516 0.99562 1.01236 0.93268 1.21387 0.92741 0.91688 0.98444 1.28004 1.11988 1.03272 1.13604 1.68514 0.90471 0.93004 0.87621 1.27760 1.16713 1.09992 1.11001 1.92982 1.74828 1.46193 1.78529 1.21060 0.95113 0.99439 0.93552 1.21025 1.02099 0.94261 0.98699 0.94935 0.92359 0.89861 0.77684 0.91456 0.83637 0.78639 0.92229 0.85937 0.83905 0.87162 0.86700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.16 9.46 71.98 0.68 -4.48 16 2 C 0.18 7.18 2.78 44.24 0.12 7.31 16 3 H 0.06 2.76 7.44 -2.39 -0.02 2.74 16 4 N -0.75 -35.24 5.02 -450.39 -2.26 -37.50 16 5 C 0.54 32.09 7.71 86.36 0.67 32.76 16 6 O -0.63 -41.95 14.68 -4.32 -0.06 -42.02 16 7 C -0.58 -33.73 9.54 24.83 0.24 -33.50 16 8 H 0.08 4.33 7.85 -2.91 -0.02 4.31 16 9 C 0.03 1.75 5.50 85.31 0.47 2.22 16 10 N -0.82 -50.51 11.83 21.84 0.26 -50.25 16 11 Si 1.00 41.95 29.56 68.60 2.03 43.98 16 12 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 13 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 14 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 15 C -0.06 -1.73 4.95 -19.86 -0.10 -1.83 16 16 C -0.14 -3.20 9.67 22.27 0.22 -2.98 16 17 C -0.02 -0.38 9.75 22.27 0.22 -0.17 16 18 C -0.47 -9.53 5.61 22.27 0.12 -9.40 16 19 S 1.41 18.62 14.19 -56.49 -0.80 17.82 16 20 C -0.50 -4.81 10.70 113.37 1.21 -3.60 16 21 O -0.93 -26.93 16.91 -148.98 -2.52 -29.45 16 22 C -0.07 -2.04 9.44 22.27 0.21 -1.83 16 23 C -0.14 -4.37 9.06 22.27 0.20 -4.17 16 24 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.39 16.55 6.85 -92.71 -0.64 15.92 16 28 H 0.28 15.35 8.29 -92.71 -0.77 14.58 16 29 H 0.15 2.91 8.04 -2.91 -0.02 2.89 16 30 H 0.20 0.68 8.06 -2.91 -0.02 0.66 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.11 3.33 7.46 -2.91 -0.02 3.31 16 35 H 0.11 3.62 6.92 -2.91 -0.02 3.60 16 Total: -1.00 -91.79 317.43 1.37 -90.42 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.47 Total: 26.66 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: 4.26 Total: -19.66 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -2.00 Total: -87.76 kcal Atomic # 8 Polarization: -68.88 SS G_CDS: -2.58 Total: -71.46 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 16 Polarization: 18.62 SS G_CDS: -0.80 Total: 17.82 kcal Total: -91.79 1.37 -90.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357635652.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.389 kcal (2) G-P(sol) polarization free energy of solvation -91.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds