Wall clock time and date at job start Tue Mar 31 2020 06:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 5 5 C 1.34779 * 119.99741 * 275.00368 * 4 2 1 6 6 O 1.21685 * 120.00209 * 359.97438 * 5 4 2 7 7 C 1.46383 * 119.99707 * 180.02562 * 5 4 2 8 8 H 1.08005 * 119.99915 * 359.97438 * 7 5 4 9 9 C 1.40044 * 119.99781 * 179.97438 * 7 5 4 10 10 N 1.30669 * 120.00444 * 359.97438 * 9 7 5 11 11 Si 1.86803 * 120.00003 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47307 * 89.99786 * 11 9 7 13 13 H 1.48499 * 109.47332 * 210.00545 * 11 9 7 14 14 H 1.48506 * 109.47011 * 329.99829 * 11 9 7 15 15 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 16 16 C 1.38227 * 120.00116 * 279.72970 * 15 2 1 17 17 C 1.38240 * 119.99664 * 179.76657 * 16 15 2 18 18 C 1.38237 * 120.00146 * 0.50448 * 17 16 15 19 19 S 1.76199 * 119.99814 * 179.72543 * 18 17 16 20 20 C 1.81404 * 102.99984 * 270.02256 * 19 18 17 21 21 O 1.42105 * 102.99642 * 156.17125 * 19 18 17 22 22 C 1.38230 * 119.99928 * 359.74776 * 18 17 16 23 23 C 1.38237 * 119.99426 * 100.00170 * 15 2 1 24 24 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 27 27 H 0.96997 * 120.00110 * 94.99637 * 4 2 1 28 28 H 0.97002 * 120.00782 * 179.97438 * 10 9 7 29 29 H 1.08002 * 120.00298 * 359.97438 * 16 15 2 30 30 H 1.08001 * 119.99772 * 180.23210 * 17 16 15 31 31 H 1.09001 * 109.46909 * 59.99886 * 20 19 18 32 32 H 1.08999 * 109.46941 * 180.02562 * 20 19 18 33 33 H 1.09003 * 109.47072 * 300.00346 * 20 19 18 34 34 H 1.07999 * 120.00332 * 179.97438 * 22 18 17 35 35 H 1.07998 * 120.00669 * 0.02562 * 23 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8580 1.1626 2.4117 7 6 2.6354 -0.7081 3.5522 8 1 2.8923 -1.7560 3.5037 9 6 2.7696 -0.0093 4.7585 10 7 2.4593 1.2586 4.8171 11 14 3.3922 -0.8899 6.2837 12 1 4.8722 -0.7856 6.3461 13 1 2.8004 -0.2636 7.4932 14 1 2.9988 -2.3207 6.2246 15 6 2.0324 -0.7105 -1.2304 16 6 2.0721 -2.0918 -1.2631 17 6 2.5284 -2.7435 -2.3936 18 6 2.9548 -2.0137 -3.4875 19 16 3.5432 -2.8443 -4.9256 20 6 5.3202 -3.0119 -4.6018 21 8 3.3375 -1.8862 -5.9547 22 6 2.9200 -0.6322 -3.4528 23 6 2.4588 0.0194 -2.3242 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.2490 -1.6317 1.1527 28 1 2.5518 1.7426 5.6526 29 1 1.7434 -2.6619 -0.4067 30 1 2.5559 -3.8228 -2.4206 31 1 5.4704 -3.5926 -3.6917 32 1 5.7959 -3.5204 -5.4404 33 1 5.7620 -2.0230 -4.4789 34 1 3.2535 -0.0620 -4.3071 35 1 2.4324 1.0988 -2.2968 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357635654.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:55 Heat of formation + Delta-G solvation = -55.902908 kcal Electronic energy + Delta-G solvation = -19082.956694 eV Core-core repulsion = 15979.377945 eV Total energy + Delta-G solvation = -3103.578749 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.49447 -37.32570 -35.86019 -34.43370 -32.45415 -31.11072 -30.58401 -29.14072 -28.73587 -26.15065 -23.72920 -22.80893 -21.01142 -19.28209 -18.26448 -17.55822 -16.56896 -15.61449 -15.42169 -15.07129 -14.97692 -14.49757 -14.04827 -13.78239 -13.59499 -13.50349 -13.30755 -12.93112 -12.68197 -12.38285 -12.29661 -11.97711 -11.66540 -11.43676 -11.23140 -10.99375 -10.93998 -10.59966 -10.48658 -10.29561 -10.19584 -9.02803 -8.91985 -8.88491 -8.49469 -7.66521 -7.59885 -6.22238 -4.68334 0.88915 1.42096 1.78379 2.55405 3.11580 3.18487 3.21605 3.60098 3.83990 4.07512 4.54837 4.72207 4.86120 4.95850 4.97380 5.01297 5.06993 5.42652 5.55472 5.66776 5.74348 5.75734 5.90637 6.00884 6.04924 6.12333 6.25987 6.32143 6.40946 6.69941 6.80087 6.97793 7.39588 7.86538 8.03123 8.27965 8.98721 9.47285 10.55831 10.74004 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.029354 B = 0.003561 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.634508 B = 7861.102588 C = 8391.133665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.182 3.818 3 H 0.086 0.914 4 N -0.760 5.760 5 C 0.556 3.444 6 O -0.579 6.579 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.088 3.912 10 N -0.767 5.767 11 Si 0.908 3.092 12 H -0.272 1.272 13 H -0.279 1.279 14 H -0.265 1.265 15 C -0.033 4.033 16 C -0.130 4.130 17 C -0.043 4.043 18 C -0.472 4.472 19 S 1.330 4.670 20 C -0.498 4.498 21 O -0.863 6.863 22 C -0.052 4.052 23 C -0.129 4.129 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.380 0.620 28 H 0.268 0.732 29 H 0.131 0.869 30 H 0.135 0.865 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.123 0.877 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.357 -13.128 -15.049 20.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.075 3.925 3 H 0.104 0.896 4 N -0.416 5.416 5 C 0.360 3.640 6 O -0.462 6.462 7 C -0.582 4.582 8 H 0.086 0.914 9 C -0.132 4.132 10 N -0.396 5.396 11 Si 0.732 3.268 12 H -0.198 1.198 13 H -0.204 1.204 14 H -0.189 1.189 15 C -0.034 4.034 16 C -0.149 4.149 17 C -0.062 4.062 18 C -0.569 4.569 19 S 1.528 4.472 20 C -0.655 4.655 21 O -0.859 6.859 22 C -0.071 4.071 23 C -0.149 4.149 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.212 0.788 28 H 0.079 0.921 29 H 0.148 0.852 30 H 0.153 0.847 31 H 0.130 0.870 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.141 0.859 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.635 -12.347 -15.692 19.977 hybrid contribution 1.472 1.252 1.271 2.313 sum 2.107 -11.096 -14.421 18.317 Atomic orbital electron populations 1.22147 0.95504 1.01473 1.01921 1.19513 0.93379 0.96922 0.82642 0.89637 1.46301 1.73323 1.12843 1.09144 1.18234 0.77822 0.86416 0.81550 1.90599 1.54795 1.16375 1.84408 1.20871 1.46888 0.97153 0.93307 0.91442 1.25702 0.93318 0.94471 0.99720 1.70013 1.35038 1.08203 1.26346 0.86373 0.79336 0.80229 0.80821 1.19766 1.20448 1.18884 1.20531 0.93327 0.94249 0.95304 1.21138 1.01104 0.94189 0.98516 1.20780 0.94760 0.99378 0.91299 1.27443 1.13714 1.01770 1.13982 1.69283 0.88240 1.10621 0.79088 1.27769 1.21934 1.07209 1.08566 1.93090 1.80506 1.63656 1.48638 1.21023 0.95217 0.93658 0.97184 1.21165 1.00165 1.00270 0.93287 0.93121 0.93031 0.91234 0.78774 0.92080 0.85160 0.84746 0.87025 0.87882 0.90045 0.85882 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.46 37.16 0.35 -2.30 16 2 C 0.18 3.45 2.78 -69.08 -0.19 3.26 16 3 H 0.09 1.85 7.44 -51.93 -0.39 1.46 16 4 N -0.76 -16.49 5.02 -56.34 -0.28 -16.77 16 5 C 0.56 15.46 7.71 -12.98 -0.10 15.36 16 6 O -0.58 -18.38 14.68 5.20 0.08 -18.31 16 7 C -0.55 -15.12 9.54 -35.63 -0.34 -15.46 16 8 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 9 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 10 N -0.77 -22.80 11.83 55.55 0.66 -22.14 16 11 Si 0.91 19.84 29.56 -169.99 -5.02 14.81 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 13 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 14 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 15 C -0.03 -0.52 4.96 -104.63 -0.52 -1.04 16 16 C -0.13 -1.70 9.06 -39.58 -0.36 -2.06 16 17 C -0.04 -0.44 9.75 -39.58 -0.39 -0.82 16 18 C -0.47 -5.38 5.61 -39.58 -0.22 -5.60 16 19 S 1.33 10.88 14.19 -107.50 -1.53 9.35 16 20 C -0.50 -3.71 10.70 101.05 1.08 -2.63 16 21 O -0.86 -12.79 16.90 -35.23 -0.60 -13.38 16 22 C -0.05 -0.73 9.44 -39.58 -0.37 -1.10 16 23 C -0.13 -1.95 9.67 -39.58 -0.38 -2.33 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 27 H 0.38 7.18 6.83 -40.82 -0.28 6.90 16 28 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 29 H 0.13 1.55 6.90 -52.49 -0.36 1.19 16 30 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 31 H 0.11 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 34 H 0.12 1.78 7.45 -52.49 -0.39 1.39 16 35 H 0.13 1.79 8.04 -52.49 -0.42 1.37 16 LS Contribution 317.40 15.07 4.78 4.78 Total: -1.00 -39.14 317.40 -7.79 -46.94 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -4.35 Total: 7.13 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -1.54 Total: -12.41 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.37 Total: -38.91 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.52 Total: -31.69 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 16 Polarization: 10.88 SS G_CDS: -1.53 Total: 9.35 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -39.14 -7.79 -46.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357635654.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.967 kcal (2) G-P(sol) polarization free energy of solvation -39.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds