Wall clock time and date at job start Tue Mar 31 2020 05:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 120.00209 * 2 1 4 4 H 1.48504 * 109.46943 * 240.00220 * 3 2 1 5 5 H 1.48507 * 109.47003 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47591 * 119.99528 * 3 2 1 7 7 C 1.38805 * 119.99603 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99371 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00178 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99787 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.47028 * 179.97438 * 10 9 7 12 12 O 1.21273 * 119.99784 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99719 * 179.97438 * 11 10 9 14 14 C 1.47022 * 125.65147 * 359.97438 * 13 11 10 15 15 C 1.54320 * 107.27114 * 178.96126 * 14 13 11 16 16 C 1.55160 * 102.94022 * 337.80813 * 15 14 13 17 17 H 1.09001 * 111.00285 * 277.38415 * 16 15 14 18 18 C 1.50704 * 111.00265 * 153.57808 * 16 15 14 19 19 C 1.34515 * 125.79099 * 119.99556 * 18 16 15 20 20 C 1.41385 * 106.83992 * 179.97438 * 19 18 16 21 21 C 1.34512 * 106.83926 * 0.23220 * 20 19 18 22 22 O 1.34305 * 108.42433 * 359.63135 * 21 20 19 23 23 C 1.47421 * 125.64293 * 180.02562 * 13 11 10 24 24 H 0.96999 * 120.00294 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47534 * 60.00028 * 10 9 7 26 26 H 1.09002 * 109.47338 * 299.99554 * 10 9 7 27 27 H 1.08999 * 109.87727 * 59.54135 * 14 13 11 28 28 H 1.09003 * 110.00664 * 298.44976 * 14 13 11 29 29 H 1.08996 * 110.71807 * 219.44423 * 15 14 13 30 30 H 1.08998 * 110.87345 * 96.24009 * 15 14 13 31 31 H 1.08002 * 126.57938 * 359.94618 * 19 18 16 32 32 H 1.08002 * 126.57514 * 179.97438 * 20 19 18 33 33 H 1.07998 * 125.78467 * 179.77218 * 21 20 19 34 34 H 1.09000 * 110.37095 * 85.27056 * 23 13 11 35 35 H 1.08997 * 110.37141 * 322.94649 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0008 14 6 4.3110 -6.2452 -0.0008 15 6 4.8663 -7.6848 0.0260 16 6 3.6849 -8.5021 0.6122 17 1 3.6718 -8.4441 1.7006 18 6 3.7388 -9.9359 0.1514 19 6 3.8415 -11.0150 0.9480 20 6 3.8573 -12.1481 0.1026 21 6 3.7686 -11.6935 -1.1602 22 8 3.6920 -10.3531 -1.1244 23 6 2.4653 -7.7679 0.0008 24 1 -0.4850 0.8400 -0.0004 25 1 3.1243 -3.7314 0.8904 26 1 3.1243 -3.7314 -0.8895 27 1 4.6470 -5.7016 0.8822 28 1 4.6496 -5.7339 -0.9020 29 1 5.7395 -7.7492 0.6751 30 1 5.1095 -8.0260 -0.9802 31 1 3.9010 -11.0156 2.0263 32 1 3.9312 -13.1804 0.4114 33 1 3.7581 -12.3031 -2.0516 34 1 2.2861 -8.1129 -1.0176 35 1 1.5800 -7.9252 0.6168 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377603717.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:58 Heat of formation + Delta-G solvation = -18.663857 kcal Electronic energy + Delta-G solvation = -18822.955797 eV Core-core repulsion = 15720.991854 eV Total energy + Delta-G solvation = -3101.963942 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.84807 -39.74245 -37.27716 -33.36636 -32.61198 -32.42213 -29.88092 -29.59383 -27.56183 -25.48471 -23.61077 -22.31255 -21.87717 -20.25536 -19.35391 -17.85816 -17.56013 -16.57867 -16.26197 -16.15460 -15.15927 -14.79897 -14.62322 -14.35128 -13.86009 -13.73383 -13.16430 -13.06850 -12.89481 -12.76566 -12.59624 -12.43156 -11.91191 -11.71432 -11.53611 -11.09290 -11.03716 -11.03132 -10.76556 -10.17283 -9.82302 -9.43328 -9.05399 -8.72299 -8.50863 -8.23379 -6.49936 -6.20884 -3.91752 1.45319 2.34860 2.67407 2.92649 3.06057 3.23944 3.26164 3.29627 3.60961 4.20289 4.22804 4.30976 4.38588 4.70592 4.78587 4.90318 5.02760 5.09362 5.11970 5.14123 5.45689 5.50541 5.54881 5.60565 5.63918 5.71333 5.76957 5.82008 5.89134 5.94034 6.14277 6.22769 6.37712 6.88494 7.59607 7.64607 8.35583 8.54326 9.24073 10.86548 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.052108 B = 0.002995 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.219159 B = 9346.802229 C = 9647.849543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.146 4.146 11 C 0.549 3.451 12 O -0.514 6.514 13 N -0.627 5.627 14 C 0.102 3.898 15 C -0.124 4.124 16 C -0.024 4.024 17 H 0.116 0.884 18 C 0.004 3.996 19 C -0.207 4.207 20 C -0.215 4.215 21 C -0.042 4.042 22 O -0.172 6.172 23 C 0.115 3.885 24 H 0.269 0.731 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.202 0.798 34 H 0.071 0.929 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.451 -21.655 0.366 24.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.338 3.662 12 O -0.388 6.388 13 N -0.365 5.365 14 C -0.022 4.022 15 C -0.162 4.162 16 C -0.043 4.043 17 H 0.134 0.866 18 C -0.046 4.046 19 C -0.226 4.226 20 C -0.234 4.234 21 C -0.109 4.109 22 O -0.068 6.068 23 C -0.008 4.008 24 H 0.079 0.921 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.219 0.781 34 H 0.089 0.911 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.405 -21.546 0.114 23.927 hybrid contribution 2.083 0.915 0.114 2.278 sum 12.488 -20.631 0.228 24.117 Atomic orbital electron populations 1.70007 1.05959 1.27579 1.46748 1.24995 0.95032 0.99022 0.94532 0.86219 0.79230 0.81219 0.78795 1.19938 1.20809 1.19929 1.22817 0.94862 0.91604 1.59091 0.90965 1.85408 1.04947 0.96328 1.96723 1.23510 1.06476 0.94844 1.04866 1.20047 0.85653 0.85431 0.75098 1.90712 1.14922 1.85101 1.48071 1.48492 1.06562 1.05480 1.75960 1.22012 0.80489 0.97068 1.02597 1.22747 0.97333 0.93524 1.02552 1.20971 0.96649 0.85667 1.00972 0.86646 1.21987 1.05642 0.95753 0.81257 1.21610 1.08861 0.91423 1.00752 1.21833 1.08503 1.00174 0.92865 1.24049 1.06296 0.80641 0.99947 1.84018 1.70869 1.22944 1.28946 1.22154 0.96813 0.80527 1.01313 0.92115 0.89217 0.89234 0.90876 0.90885 0.89363 0.89967 0.83408 0.83481 0.78133 0.91115 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.03 5.35 36.01 0.19 -2.84 16 11 C 0.55 10.82 7.87 -10.98 -0.09 10.73 16 12 O -0.51 -12.18 16.12 5.56 0.09 -12.10 16 13 N -0.63 -9.26 3.33 -170.51 -0.57 -9.83 16 14 C 0.10 1.09 6.49 -3.07 -0.02 1.07 16 15 C -0.12 -1.03 6.41 -24.90 -0.16 -1.19 16 16 C -0.02 -0.22 3.49 -89.61 -0.31 -0.53 16 17 H 0.12 0.94 8.13 -51.93 -0.42 0.51 16 18 C 0.00 0.04 5.95 -35.62 -0.21 -0.17 16 19 C -0.21 -1.86 10.80 -39.70 -0.43 -2.29 16 20 C -0.21 -1.75 10.91 -39.70 -0.43 -2.18 16 21 C -0.04 -0.34 12.09 29.42 0.36 0.02 16 22 O -0.17 -1.79 10.48 5.70 0.06 -1.73 16 23 C 0.12 1.47 6.36 -2.52 -0.02 1.45 16 24 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 26 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.70 8.03 -51.93 -0.42 0.28 16 31 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.20 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.07 0.93 7.88 -51.93 -0.41 0.53 16 35 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 LS Contribution 318.38 15.07 4.80 4.80 Total: -1.00 -35.19 318.38 -7.64 -42.83 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -4.59 Total: -1.98 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -0.92 Total: -8.95 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.17 Total: -35.39 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.15 Total: -13.83 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.19 -7.64 -42.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377603717.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.164 kcal (2) G-P(sol) polarization free energy of solvation -35.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds