Wall clock time and date at job start Tue Mar 31 2020 05:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 120.00209 * 2 1 4 4 H 1.48504 * 109.46943 * 240.00220 * 3 2 1 5 5 H 1.48507 * 109.47003 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47591 * 119.99528 * 3 2 1 7 7 C 1.38805 * 119.99603 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99371 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00178 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99787 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.47028 * 179.97438 * 10 9 7 12 12 O 1.21273 * 119.99784 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99719 * 179.97438 * 11 10 9 14 14 C 1.47022 * 125.65147 * 359.97438 * 13 11 10 15 15 C 1.54320 * 107.27114 * 178.96126 * 14 13 11 16 16 C 1.55160 * 102.94022 * 337.80813 * 15 14 13 17 17 H 1.09001 * 111.00285 * 277.38415 * 16 15 14 18 18 C 1.50704 * 111.00265 * 153.57808 * 16 15 14 19 19 C 1.34515 * 125.79099 * 119.99556 * 18 16 15 20 20 C 1.41385 * 106.83992 * 179.97438 * 19 18 16 21 21 C 1.34512 * 106.83926 * 0.23220 * 20 19 18 22 22 O 1.34305 * 108.42433 * 359.63135 * 21 20 19 23 23 C 1.47421 * 125.64293 * 180.02562 * 13 11 10 24 24 H 0.96999 * 120.00294 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47534 * 60.00028 * 10 9 7 26 26 H 1.09002 * 109.47338 * 299.99554 * 10 9 7 27 27 H 1.08999 * 109.87727 * 59.54135 * 14 13 11 28 28 H 1.09003 * 110.00664 * 298.44976 * 14 13 11 29 29 H 1.08996 * 110.71807 * 219.44423 * 15 14 13 30 30 H 1.08998 * 110.87345 * 96.24009 * 15 14 13 31 31 H 1.08002 * 126.57938 * 359.94618 * 19 18 16 32 32 H 1.08002 * 126.57514 * 179.97438 * 20 19 18 33 33 H 1.07998 * 125.78467 * 179.77218 * 21 20 19 34 34 H 1.09000 * 110.37095 * 85.27056 * 23 13 11 35 35 H 1.08997 * 110.37141 * 322.94649 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0008 14 6 4.3110 -6.2452 -0.0008 15 6 4.8663 -7.6848 0.0260 16 6 3.6849 -8.5021 0.6122 17 1 3.6718 -8.4441 1.7006 18 6 3.7388 -9.9359 0.1514 19 6 3.8415 -11.0150 0.9480 20 6 3.8573 -12.1481 0.1026 21 6 3.7686 -11.6935 -1.1602 22 8 3.6920 -10.3531 -1.1244 23 6 2.4653 -7.7679 0.0008 24 1 -0.4850 0.8400 -0.0004 25 1 3.1243 -3.7314 0.8904 26 1 3.1243 -3.7314 -0.8895 27 1 4.6470 -5.7016 0.8822 28 1 4.6496 -5.7339 -0.9020 29 1 5.7395 -7.7492 0.6751 30 1 5.1095 -8.0260 -0.9802 31 1 3.9010 -11.0156 2.0263 32 1 3.9312 -13.1804 0.4114 33 1 3.7581 -12.3031 -2.0516 34 1 2.2861 -8.1129 -1.0176 35 1 1.5800 -7.9252 0.6168 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377603717.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:57 Heat of formation + Delta-G solvation = -41.515051 kcal Electronic energy + Delta-G solvation = -18823.946699 eV Core-core repulsion = 15720.991854 eV Total energy + Delta-G solvation = -3102.954844 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.50827 -41.02102 -38.54893 -34.59004 -34.15887 -33.57315 -31.00711 -30.72980 -28.56161 -27.64093 -24.70286 -23.04844 -22.56405 -20.96276 -20.75640 -19.61440 -18.46032 -18.00521 -17.29324 -16.88282 -16.85876 -16.59542 -15.93357 -15.56681 -15.32528 -14.61232 -14.48996 -14.17716 -13.84137 -13.69654 -13.65016 -13.41005 -13.34575 -13.16228 -12.86198 -12.63922 -12.56020 -12.35028 -11.83358 -11.74825 -11.12814 -11.03676 -10.81600 -10.29545 -9.78017 -9.34440 -8.69118 -8.34575 -6.13804 0.78797 1.22511 1.44312 1.44681 1.51644 1.55004 1.73004 1.98619 2.16780 2.27390 2.99489 3.21210 3.47098 3.50214 3.61647 3.89516 4.09154 4.17403 4.19669 4.23496 4.28929 4.40351 4.43863 4.60051 4.74798 4.79164 4.94780 4.95198 5.03812 5.14382 5.23498 5.28942 5.41335 5.63851 6.19503 6.23888 6.32590 7.05514 7.06350 8.74610 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.052108 B = 0.002995 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.219159 B = 9346.802229 C = 9647.849543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.153 6.153 10 C -0.119 4.119 11 C 0.546 3.454 12 O -0.568 6.568 13 N -0.617 5.617 14 C 0.091 3.909 15 C -0.111 4.111 16 C -0.010 4.010 17 H 0.131 0.869 18 C -0.017 4.017 19 C -0.210 4.210 20 C -0.227 4.227 21 C -0.044 4.044 22 O -0.193 6.193 23 C 0.110 3.890 24 H 0.271 0.729 25 H 0.111 0.889 26 H 0.107 0.893 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.163 0.837 32 H 0.168 0.832 33 H 0.232 0.768 34 H 0.063 0.937 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.588 -22.405 0.663 27.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.270 4.270 11 C 0.335 3.665 12 O -0.446 6.446 13 N -0.352 5.352 14 C -0.031 4.031 15 C -0.149 4.149 16 C -0.029 4.029 17 H 0.149 0.851 18 C -0.067 4.067 19 C -0.229 4.229 20 C -0.246 4.246 21 C -0.111 4.111 22 O -0.089 6.089 23 C -0.012 4.012 24 H 0.080 0.920 25 H 0.129 0.871 26 H 0.126 0.874 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.137 0.863 30 H 0.100 0.900 31 H 0.180 0.820 32 H 0.185 0.815 33 H 0.248 0.752 34 H 0.081 0.919 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.604 -22.342 0.413 26.161 hybrid contribution 1.154 0.945 -0.002 1.492 sum 14.758 -21.397 0.412 25.996 Atomic orbital electron populations 1.70182 1.08043 1.28726 1.47906 1.26164 0.95981 1.03402 0.93671 0.84978 0.77776 0.75508 0.79566 1.18615 1.20438 1.18497 1.23160 0.95366 0.91772 1.59056 0.89758 1.85619 1.10579 0.99362 1.97059 1.23302 1.03426 0.93601 1.06634 1.19838 0.85396 0.86039 0.75264 1.90689 1.17151 1.85774 1.50999 1.48422 1.08139 1.05267 1.73404 1.22395 0.77594 0.99291 1.03822 1.22741 0.97639 0.91203 1.03285 1.20900 0.94976 0.85431 1.01620 0.85071 1.22043 1.07303 0.95965 0.81409 1.21936 1.07834 0.91494 1.01648 1.22182 1.08497 1.01053 0.92844 1.24763 1.05026 0.80001 1.01341 1.84006 1.71346 1.24200 1.29397 1.22270 0.98281 0.79651 1.01034 0.91963 0.87097 0.87445 0.89186 0.90082 0.86310 0.89982 0.81955 0.81493 0.75166 0.91875 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.51 13.22 21.65 0.29 -56.22 16 2 C 0.01 0.72 5.49 84.86 0.47 1.18 16 3 Si 1.00 43.57 29.55 68.60 2.03 45.60 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.55 -31.34 9.50 67.96 0.65 -30.70 16 8 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 9 S -0.15 -8.69 20.57 -56.49 -1.16 -9.86 16 10 C -0.12 -4.87 5.35 71.24 0.38 -4.49 16 11 C 0.55 21.72 7.87 87.66 0.69 22.41 16 12 O -0.57 -28.06 16.12 -3.01 -0.05 -28.11 16 13 N -0.62 -17.71 3.33 -811.76 -2.70 -20.41 16 14 C 0.09 1.70 6.49 86.73 0.56 2.26 16 15 C -0.11 -1.51 6.41 31.78 0.20 -1.30 16 16 C -0.01 -0.17 3.49 -10.14 -0.04 -0.21 16 17 H 0.13 1.79 8.13 -2.39 -0.02 1.77 16 18 C -0.02 -0.31 5.95 24.83 0.15 -0.16 16 19 C -0.21 -3.34 10.80 22.19 0.24 -3.10 16 20 C -0.23 -3.19 10.91 22.19 0.24 -2.95 16 21 C -0.04 -0.63 12.09 66.97 0.81 0.18 16 22 O -0.19 -3.75 10.48 -2.52 -0.03 -3.78 16 23 C 0.11 2.79 6.36 86.86 0.55 3.34 16 24 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 25 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 26 H 0.11 4.00 8.14 -2.39 -0.02 3.99 16 27 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.16 8.03 -2.39 -0.02 1.14 16 31 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 33 H 0.23 1.44 8.06 -2.91 -0.02 1.42 16 34 H 0.06 1.69 7.88 -2.39 -0.02 1.68 16 35 H 0.07 1.92 8.04 -2.39 -0.02 1.90 16 Total: -1.00 -79.44 318.38 4.36 -75.07 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 1.08 Total: 11.23 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 4.91 Total: -13.54 kcal Atomic # 7 Polarization: -74.21 SS G_CDS: -2.41 Total: -76.63 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.07 Total: -31.88 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.86 kcal Total: -79.44 4.36 -75.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377603717.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.556 kcal (2) G-P(sol) polarization free energy of solvation -79.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds