Wall clock time and date at job start Tue Mar 31 2020 06:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47238 * 2 1 4 4 O 1.42907 * 109.46956 * 119.99816 * 2 1 3 5 5 N 1.41601 * 113.99866 * 85.00053 * 4 2 1 6 6 C 1.34781 * 119.99844 * 179.97438 * 5 4 2 7 7 O 1.21606 * 119.99855 * 359.97438 * 6 5 4 8 8 C 1.47428 * 119.99850 * 179.97438 * 6 5 4 9 9 C 1.39678 * 120.21400 * 0.02562 * 8 6 5 10 10 C 1.37804 * 119.93306 * 179.97438 * 9 8 6 11 11 C 1.38656 * 120.38754 * 0.02562 * 10 9 8 12 12 C 1.37915 * 120.43686 * 359.97438 * 11 10 9 13 13 C 1.39113 * 120.04584 * 359.97438 * 12 11 10 14 14 S 1.76204 * 120.18761 * 179.97438 * 13 12 11 15 15 C 1.76204 * 99.99719 * 6.86464 * 14 13 12 16 16 H 1.07991 * 120.00493 * 5.66058 * 15 14 13 17 17 C 1.38807 * 119.99763 * 185.65520 * 15 14 13 18 18 N 1.31561 * 120.00281 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00053 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46968 * 90.00354 * 19 17 15 21 21 H 1.48501 * 109.47471 * 210.00180 * 19 17 15 22 22 H 1.48498 * 109.47275 * 330.00753 * 19 17 15 23 23 H 1.08997 * 109.47222 * 60.00104 * 1 2 3 24 24 H 1.08996 * 109.47132 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47071 * 300.00565 * 1 2 3 26 26 H 1.09003 * 109.47071 * 239.99434 * 2 1 3 27 27 H 1.09002 * 109.47141 * 179.97438 * 3 2 1 28 28 H 1.09007 * 109.46998 * 299.99559 * 3 2 1 29 29 H 1.08997 * 109.47213 * 59.99936 * 3 2 1 30 30 H 0.96997 * 120.00122 * 359.97438 * 5 4 2 31 31 H 1.07997 * 120.03544 * 0.25294 * 9 8 6 32 32 H 1.08007 * 119.80795 * 179.97438 * 10 9 8 33 33 H 1.07996 * 119.78651 * 179.97438 * 11 10 9 34 34 H 1.07995 * 119.97769 * 179.97438 * 12 11 10 35 35 H 0.96998 * 120.00032 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 7 2.0920 -2.0800 1.0253 6 6 2.5277 -2.8353 2.0530 7 8 2.8476 -2.3091 3.1016 8 6 2.6163 -4.2996 1.9059 9 6 2.2505 -4.9086 0.7033 10 6 2.3361 -6.2777 0.5719 11 6 2.7835 -7.0570 1.6279 12 6 3.1488 -6.4721 2.8222 13 6 3.0705 -5.0915 2.9743 14 16 3.5355 -4.3403 4.4988 15 6 4.1878 -5.7420 5.3441 16 1 4.2827 -6.6868 4.8298 17 6 4.5799 -5.6317 6.6711 18 7 4.4640 -4.4808 7.2978 19 14 5.2708 -7.1179 7.5674 20 1 6.7451 -7.1591 7.3942 21 1 4.9448 -7.0199 9.0129 22 1 4.6719 -8.3561 7.0077 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 1.8371 -2.4996 0.1888 31 1 1.9051 -4.3068 -0.1243 32 1 2.0523 -6.7465 -0.3588 33 1 2.8464 -8.1291 1.5144 34 1 3.4958 -7.0862 3.6399 35 1 4.7376 -4.4039 8.2252 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383076607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:25 Heat of formation + Delta-G solvation = -5.698981 kcal Electronic energy + Delta-G solvation = -19125.047781 eV Core-core repulsion = 16023.646038 eV Total energy + Delta-G solvation = -3101.401743 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.40110 -37.99157 -36.99778 -33.48889 -32.76395 -31.56324 -30.32071 -29.55316 -27.43563 -25.84107 -23.37260 -22.05402 -21.66071 -20.31127 -18.39546 -17.74921 -17.01698 -15.91508 -15.33072 -15.22384 -14.84881 -14.48887 -14.16728 -14.02861 -13.74381 -13.52412 -13.01207 -12.86481 -12.52424 -12.41609 -12.14525 -11.89774 -11.61398 -11.25864 -11.19859 -11.17941 -10.94990 -10.80669 -10.34319 -9.84966 -9.68795 -9.51716 -8.76922 -8.59221 -8.37206 -8.08634 -6.56433 -6.46717 -4.18125 1.48403 1.97333 2.17724 3.09828 3.13112 3.19920 3.40148 3.51021 4.04862 4.44654 4.49996 4.62770 4.77181 4.91204 4.94220 5.08397 5.21987 5.30695 5.35388 5.55614 5.56078 5.59772 5.67501 5.86139 5.94562 5.99746 6.06323 6.32711 6.53863 6.77885 6.96489 7.09159 7.14806 7.42290 7.55313 7.73900 8.15121 8.82458 8.99037 10.56428 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.021511 B = 0.004679 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.352662 B = 5982.789536 C = 7137.856057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.053 3.947 3 C -0.145 4.145 4 O -0.138 6.138 5 N -0.605 5.605 6 C 0.563 3.437 7 O -0.490 6.490 8 C -0.169 4.169 9 C -0.062 4.062 10 C -0.186 4.186 11 C -0.075 4.075 12 C -0.150 4.150 13 C -0.056 4.056 14 S 0.192 5.808 15 C -0.598 4.598 16 H 0.092 0.908 17 C 0.084 3.916 18 N -0.856 5.856 19 Si 0.920 3.080 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.268 1.268 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.399 0.601 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.141 0.859 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.075 3.282 -15.975 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.006 4.006 3 C -0.203 4.203 4 O -0.142 6.142 5 N -0.311 5.311 6 C 0.353 3.647 7 O -0.365 6.365 8 C -0.185 4.185 9 C -0.082 4.082 10 C -0.210 4.210 11 C -0.097 4.097 12 C -0.175 4.175 13 C -0.177 4.177 14 S 0.457 5.543 15 C -0.744 4.744 16 H 0.110 0.890 17 C -0.128 4.128 18 N -0.488 5.488 19 Si 0.746 3.254 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.192 1.192 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.240 0.760 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.158 0.842 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.711 5.174 -14.017 15.996 hybrid contribution 0.176 -2.310 -0.682 2.415 sum -5.535 2.865 -14.699 15.966 Atomic orbital electron populations 1.22361 0.95509 1.02814 1.02807 1.22559 0.94402 0.94369 0.89239 1.21802 1.02307 0.93199 1.02985 1.90631 1.88094 1.02047 1.33437 1.47573 1.71977 0.94302 1.17222 1.18323 0.77715 0.85970 0.82685 1.90807 1.46823 1.72416 1.26409 1.18761 1.14212 0.89659 0.95839 1.20878 0.97412 0.95070 0.94873 1.20620 1.07734 0.93439 0.99240 1.21100 0.96534 0.99008 0.93077 1.21436 1.03531 0.93857 0.98692 1.23054 0.97080 0.96454 1.01064 1.84864 1.60967 1.09379 0.99051 1.24072 1.48929 1.00901 1.00505 0.89025 1.25116 0.94189 0.97155 0.96297 1.69980 1.42582 1.24125 1.12159 0.86130 0.79423 0.81359 0.78531 1.19838 1.20455 1.19196 0.91542 0.92160 0.91441 0.91041 0.91457 0.90661 0.91323 0.76005 0.87323 0.86929 0.86862 0.84175 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 9.56 37.16 0.36 -1.27 16 2 C 0.05 0.56 3.47 -26.73 -0.09 0.47 16 3 C -0.14 -1.29 9.56 37.16 0.36 -0.94 16 4 O -0.14 -2.22 10.75 -29.62 -0.32 -2.54 16 5 N -0.61 -9.64 6.32 30.43 0.19 -9.45 16 6 C 0.56 11.61 7.89 -12.52 -0.10 11.51 16 7 O -0.49 -12.40 14.18 -12.87 -0.18 -12.58 16 8 C -0.17 -3.35 5.89 -104.75 -0.62 -3.96 16 9 C -0.06 -0.96 9.53 -39.20 -0.37 -1.33 16 10 C -0.19 -2.75 10.02 -39.59 -0.40 -3.15 16 11 C -0.07 -1.24 10.03 -39.55 -0.40 -1.63 16 12 C -0.15 -3.08 9.22 -39.38 -0.36 -3.44 16 13 C -0.06 -1.28 6.14 -38.39 -0.24 -1.52 16 14 S 0.19 5.20 18.56 -107.50 -2.00 3.21 16 15 C -0.60 -16.44 9.00 30.94 0.28 -16.16 16 16 H 0.09 2.37 4.98 -52.49 -0.26 2.11 16 17 C 0.08 2.29 5.49 -17.46 -0.10 2.20 16 18 N -0.86 -24.78 13.22 55.49 0.73 -24.05 16 19 Si 0.92 20.60 29.55 -169.99 -5.02 15.58 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.62 7.94 -51.93 -0.41 0.21 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.40 4.71 6.46 -40.82 -0.26 4.45 16 31 H 0.11 1.22 6.40 -52.49 -0.34 0.89 16 32 H 0.11 1.30 8.06 -52.48 -0.42 0.87 16 33 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 34 H 0.14 2.99 5.03 -52.49 -0.26 2.73 16 35 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 313.82 15.07 4.73 4.73 Total: -1.00 -33.16 313.82 -7.60 -40.76 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -4.05 Total: 3.56 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -1.68 Total: -19.23 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.93 Total: -33.49 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.50 Total: -15.12 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -2.00 Total: 3.21 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.16 -7.60 -40.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383076607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.064 kcal (2) G-P(sol) polarization free energy of solvation -33.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds