Wall clock time and date at job start Tue Mar 31 2020 06:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47238 * 2 1 4 4 O 1.42907 * 109.46956 * 119.99816 * 2 1 3 5 5 N 1.41601 * 113.99866 * 85.00053 * 4 2 1 6 6 C 1.34781 * 119.99844 * 179.97438 * 5 4 2 7 7 O 1.21606 * 119.99855 * 359.97438 * 6 5 4 8 8 C 1.47428 * 119.99850 * 179.97438 * 6 5 4 9 9 C 1.39678 * 120.21400 * 0.02562 * 8 6 5 10 10 C 1.37804 * 119.93306 * 179.97438 * 9 8 6 11 11 C 1.38656 * 120.38754 * 0.02562 * 10 9 8 12 12 C 1.37915 * 120.43686 * 359.97438 * 11 10 9 13 13 C 1.39113 * 120.04584 * 359.97438 * 12 11 10 14 14 S 1.76204 * 120.18761 * 179.97438 * 13 12 11 15 15 C 1.76204 * 99.99719 * 6.86464 * 14 13 12 16 16 H 1.07991 * 120.00493 * 5.66058 * 15 14 13 17 17 C 1.38807 * 119.99763 * 185.65520 * 15 14 13 18 18 N 1.31561 * 120.00281 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00053 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46968 * 90.00354 * 19 17 15 21 21 H 1.48501 * 109.47471 * 210.00180 * 19 17 15 22 22 H 1.48498 * 109.47275 * 330.00753 * 19 17 15 23 23 H 1.08997 * 109.47222 * 60.00104 * 1 2 3 24 24 H 1.08996 * 109.47132 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47071 * 300.00565 * 1 2 3 26 26 H 1.09003 * 109.47071 * 239.99434 * 2 1 3 27 27 H 1.09002 * 109.47141 * 179.97438 * 3 2 1 28 28 H 1.09007 * 109.46998 * 299.99559 * 3 2 1 29 29 H 1.08997 * 109.47213 * 59.99936 * 3 2 1 30 30 H 0.96997 * 120.00122 * 359.97438 * 5 4 2 31 31 H 1.07997 * 120.03544 * 0.25294 * 9 8 6 32 32 H 1.08007 * 119.80795 * 179.97438 * 10 9 8 33 33 H 1.07996 * 119.78651 * 179.97438 * 11 10 9 34 34 H 1.07995 * 119.97769 * 179.97438 * 12 11 10 35 35 H 0.96998 * 120.00032 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 7 2.0920 -2.0800 1.0253 6 6 2.5277 -2.8353 2.0530 7 8 2.8476 -2.3091 3.1016 8 6 2.6163 -4.2996 1.9059 9 6 2.2505 -4.9086 0.7033 10 6 2.3361 -6.2777 0.5719 11 6 2.7835 -7.0570 1.6279 12 6 3.1488 -6.4721 2.8222 13 6 3.0705 -5.0915 2.9743 14 16 3.5355 -4.3403 4.4988 15 6 4.1878 -5.7420 5.3441 16 1 4.2827 -6.6868 4.8298 17 6 4.5799 -5.6317 6.6711 18 7 4.4640 -4.4808 7.2978 19 14 5.2708 -7.1179 7.5674 20 1 6.7451 -7.1591 7.3942 21 1 4.9448 -7.0199 9.0129 22 1 4.6719 -8.3561 7.0077 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 1.8371 -2.4996 0.1888 31 1 1.9051 -4.3068 -0.1243 32 1 2.0523 -6.7465 -0.3588 33 1 2.8464 -8.1291 1.5144 34 1 3.4958 -7.0862 3.6399 35 1 4.7376 -4.4039 8.2252 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383076607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:24 Heat of formation + Delta-G solvation = -27.849080 kcal Electronic energy + Delta-G solvation = -19126.008282 eV Core-core repulsion = 16023.646038 eV Total energy + Delta-G solvation = -3102.362243 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.91227 -39.25842 -38.43211 -34.76456 -34.68769 -32.87029 -31.80796 -30.91715 -28.15871 -27.84343 -24.86891 -23.45714 -22.65385 -21.82183 -19.97694 -19.19622 -18.50503 -17.43587 -17.06376 -16.51489 -16.31533 -15.73171 -15.49174 -15.46009 -15.22005 -14.77330 -14.61963 -14.24769 -13.62466 -13.32882 -13.29002 -13.14226 -12.97771 -12.89979 -12.81432 -12.55493 -12.04637 -12.01070 -11.77844 -11.52110 -11.41660 -11.31302 -10.42546 -10.02309 -9.94715 -9.74435 -8.48848 -8.44668 -6.25163 -0.00261 0.53090 0.91760 1.27371 1.38036 1.46677 1.63982 1.97789 2.21929 2.87748 3.02232 3.23174 3.48563 3.77531 3.88897 3.99143 4.01605 4.15912 4.27108 4.57921 4.62673 4.70214 4.81163 4.83372 4.85578 4.89360 5.08310 5.21227 5.27702 5.34057 5.44689 5.54887 5.67415 5.87468 6.09459 6.15963 6.44300 6.96186 7.37470 8.61204 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.021511 B = 0.004679 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.352662 B = 5982.789536 C = 7137.856057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.042 3.958 3 C -0.143 4.143 4 O -0.172 6.172 5 N -0.581 5.581 6 C 0.556 3.444 7 O -0.548 6.548 8 C -0.172 4.172 9 C -0.053 4.053 10 C -0.153 4.153 11 C -0.065 4.065 12 C -0.171 4.171 13 C -0.070 4.070 14 S 0.059 5.941 15 C -0.601 4.601 16 H 0.098 0.902 17 C 0.023 3.977 18 N -0.907 5.907 19 Si 0.996 3.004 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.255 1.255 23 H 0.097 0.903 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.099 0.901 27 H 0.058 0.942 28 H 0.109 0.891 29 H 0.055 0.945 30 H 0.421 0.579 31 H 0.163 0.837 32 H 0.171 0.829 33 H 0.153 0.847 34 H 0.121 0.879 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.391 1.271 -20.877 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.016 4.016 3 C -0.202 4.202 4 O -0.177 6.177 5 N -0.286 5.286 6 C 0.346 3.654 7 O -0.426 6.426 8 C -0.186 4.186 9 C -0.073 4.073 10 C -0.176 4.176 11 C -0.086 4.086 12 C -0.196 4.196 13 C -0.188 4.188 14 S 0.318 5.682 15 C -0.748 4.748 16 H 0.116 0.884 17 C -0.183 4.183 18 N -0.541 5.541 19 Si 0.817 3.183 20 H -0.191 1.191 21 H -0.199 1.199 22 H -0.178 1.178 23 H 0.116 0.884 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.117 0.883 27 H 0.077 0.923 28 H 0.128 0.872 29 H 0.074 0.926 30 H 0.266 0.734 31 H 0.180 0.820 32 H 0.188 0.812 33 H 0.171 0.829 34 H 0.139 0.861 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.085 3.136 -19.087 20.599 hybrid contribution 0.391 -1.649 0.307 1.722 sum -6.694 1.487 -18.779 19.992 Atomic orbital electron populations 1.22348 0.94284 1.02972 1.03532 1.23012 0.95448 0.94738 0.88391 1.21866 1.01844 0.92404 1.04045 1.90660 1.88721 1.01454 1.36893 1.47121 1.69799 0.94906 1.16784 1.18604 0.77289 0.86778 0.82728 1.90804 1.49369 1.73524 1.28946 1.19079 1.13342 0.89432 0.96733 1.21457 0.95475 0.96285 0.94066 1.21351 1.03105 0.92838 1.00285 1.21593 0.94182 1.01356 0.91452 1.21452 1.05038 0.92793 1.00348 1.22942 0.98977 0.97685 0.99245 1.85110 1.66594 1.12295 1.04189 1.24256 1.49052 1.00578 1.00894 0.88424 1.26200 0.94617 1.00320 0.97124 1.70149 1.44928 1.26652 1.12418 0.84997 0.78700 0.77505 0.77110 1.19127 1.19898 1.17832 0.88432 0.92274 0.93127 0.88279 0.92279 0.87216 0.92610 0.73380 0.81978 0.81169 0.82905 0.86091 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 9.56 71.98 0.69 -2.03 16 2 C 0.04 0.78 3.47 30.59 0.11 0.88 16 3 C -0.14 -2.31 9.56 71.98 0.69 -1.62 16 4 O -0.17 -5.44 10.75 -21.44 -0.23 -5.67 16 5 N -0.58 -17.58 6.32 -175.88 -1.11 -18.70 16 6 C 0.56 23.27 7.89 86.66 0.68 23.95 16 7 O -0.55 -29.71 14.18 13.30 0.19 -29.53 16 8 C -0.17 -6.65 5.89 -19.95 -0.12 -6.77 16 9 C -0.05 -1.35 9.53 22.52 0.21 -1.14 16 10 C -0.15 -3.45 10.02 22.27 0.22 -3.23 16 11 C -0.06 -1.84 10.03 22.29 0.22 -1.62 16 12 C -0.17 -6.95 9.22 22.40 0.21 -6.75 16 13 C -0.07 -3.30 6.14 23.04 0.14 -3.16 16 14 S 0.06 3.47 18.56 -56.49 -1.05 2.42 16 15 C -0.60 -35.39 9.00 67.96 0.61 -34.78 16 16 H 0.10 5.35 4.98 -2.91 -0.01 5.34 16 17 C 0.02 1.33 5.49 84.87 0.47 1.79 16 18 N -0.91 -56.50 13.22 21.65 0.29 -56.21 16 19 Si 1.00 44.14 29.55 68.60 2.03 46.17 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.25 -10.55 7.11 99.48 0.71 -9.85 16 23 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.10 1.31 7.94 -2.39 -0.02 1.29 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.42 8.24 6.46 -92.71 -0.60 7.64 16 31 H 0.16 2.41 6.40 -2.91 -0.02 2.39 16 32 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 34 H 0.12 5.33 5.03 -2.91 -0.01 5.31 16 35 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -84.10 313.82 4.77 -79.33 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.52 Total: 16.65 kcal Atomic # 6 Polarization: -38.60 SS G_CDS: 4.14 Total: -34.47 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -0.83 Total: -74.91 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -0.04 Total: -35.20 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.05 Total: 2.42 kcal Total: -84.10 4.77 -79.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383076607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.478 kcal (2) G-P(sol) polarization free energy of solvation -84.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds