Wall clock time and date at job start Tue Mar 31 2020 05:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99562 * 2 1 4 4 C 1.38220 * 119.99862 * 179.72405 * 3 2 1 5 5 C 1.38255 * 119.99693 * 0.26328 * 4 3 2 6 6 N 1.48024 * 119.99838 * 180.02562 * 5 4 3 7 7 O 1.21798 * 119.99792 * 359.97438 * 6 5 4 8 8 O 1.21803 * 119.99661 * 180.02562 * 6 5 4 9 9 C 1.38216 * 120.00139 * 359.97438 * 5 4 3 10 10 C 1.38208 * 120.00304 * 180.24599 * 2 1 3 11 11 C 1.50698 * 120.00211 * 359.97438 * 10 2 1 12 12 H 1.09007 * 109.47073 * 35.28418 * 11 10 2 13 13 C 1.52996 * 109.47147 * 275.28461 * 11 10 2 14 14 S 1.81400 * 109.47329 * 155.27985 * 11 10 2 15 15 C 1.81401 * 103.00062 * 185.00051 * 14 11 10 16 16 C 1.50697 * 109.47035 * 179.97438 * 15 14 11 17 17 H 1.08004 * 119.99951 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99905 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00064 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00148 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47066 * 89.99253 * 20 18 16 22 22 H 1.48501 * 109.47213 * 209.99735 * 20 18 16 23 23 H 1.48499 * 109.46658 * 329.99968 * 20 18 16 24 24 H 1.09000 * 109.47366 * 89.99616 * 1 2 3 25 25 H 1.09000 * 109.46813 * 209.99274 * 1 2 3 26 26 H 1.09001 * 109.47363 * 329.99778 * 1 2 3 27 27 H 1.08002 * 120.00476 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.00153 * 180.27785 * 4 3 2 29 29 H 1.08001 * 119.99666 * 180.02562 * 9 5 4 30 30 H 1.09006 * 109.47241 * 179.97438 * 13 11 10 31 31 H 1.09000 * 109.47412 * 299.99687 * 13 11 10 32 32 H 1.09003 * 109.47148 * 59.99818 * 13 11 10 33 33 H 1.08997 * 109.47082 * 300.00344 * 15 14 11 34 34 H 1.09002 * 109.46769 * 60.00548 * 15 14 11 35 35 H 0.96998 * 120.00037 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0058 5 6 4.2717 0.0002 0.0060 6 7 5.7519 0.0002 0.0128 7 8 6.3608 1.0551 0.0176 8 8 6.3609 -1.0546 0.0125 9 6 3.5806 -1.1968 0.0011 10 6 2.1981 -1.1969 -0.0051 11 6 1.4447 -2.5020 -0.0102 12 1 0.5363 -2.3949 -0.6030 13 6 1.0753 -2.8831 1.4248 14 16 2.4876 -3.7995 -0.7310 15 6 1.3747 -5.2307 -0.7918 16 6 2.1059 -6.4110 -1.3777 17 1 3.1371 -6.3103 -1.6826 18 6 1.4588 -7.6197 -1.5235 19 7 2.0968 -8.6496 -2.0353 20 14 -0.3246 -7.7941 -0.9955 21 1 -1.2137 -7.4624 -2.1377 22 1 -0.5777 -9.1912 -0.5605 23 1 -0.5999 -6.8671 0.1315 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5137 26 1 -0.3634 0.8900 0.5139 27 1 1.6582 2.1327 0.0004 28 1 4.1203 2.1328 0.0103 29 1 4.1207 -2.1321 0.0017 30 1 0.5299 -3.8270 1.4211 31 1 1.9836 -2.9903 2.0176 32 1 0.4486 -2.1035 1.8579 33 1 1.0404 -5.4740 0.2167 34 1 0.5114 -4.9935 -1.4136 35 1 1.6416 -9.5001 -2.1376 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413015022.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:33 Heat of formation + Delta-G solvation = 5.868158 kcal Electronic energy + Delta-G solvation = -19134.786084 eV Core-core repulsion = 16033.885930 eV Total energy + Delta-G solvation = -3100.900154 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.13838 -40.07352 -36.50684 -34.87546 -33.15403 -33.12271 -30.28653 -29.25205 -28.76109 -25.22770 -24.31664 -22.75128 -22.43521 -21.13644 -18.90919 -18.62914 -17.47235 -17.04786 -16.48953 -15.94519 -15.54796 -14.67687 -14.48640 -14.31740 -14.06711 -13.74844 -13.20988 -12.96227 -12.73250 -12.56693 -12.38405 -12.30915 -12.05130 -11.76390 -11.50800 -11.30262 -11.07850 -11.05863 -10.88691 -10.44604 -10.20363 -9.70718 -9.51778 -9.25193 -9.05950 -8.78529 -7.02405 -6.24410 -4.27443 -0.20296 0.76566 1.28738 1.42522 2.18970 3.07452 3.13956 3.20525 3.21798 3.43658 4.11250 4.22890 4.23399 4.40815 4.57110 4.68676 4.97729 5.04165 5.06560 5.07044 5.20342 5.24147 5.39915 5.48279 5.60082 5.65552 5.72914 5.85213 5.98639 6.14111 6.16881 6.44929 6.45929 6.58910 7.34009 7.68674 8.22966 8.78588 9.30372 10.87649 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.021517 B = 0.004588 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.995762 B = 6101.078291 C = 7172.062168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.026 4.026 3 C -0.122 4.122 4 C -0.058 4.058 5 C -0.049 4.049 6 N 0.030 4.970 7 O -0.172 6.172 8 O -0.151 6.151 9 C -0.035 4.035 10 C -0.054 4.054 11 C -0.041 4.041 12 H 0.098 0.902 13 C -0.144 4.144 14 S -0.248 6.248 15 C 0.046 3.954 16 C -0.517 4.517 17 H 0.085 0.915 18 C 0.081 3.919 19 N -0.888 5.888 20 Si 0.878 3.122 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.267 1.267 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.146 0.854 28 H 0.151 0.849 29 H 0.168 0.832 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.037 0.963 34 H 0.030 0.970 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.366 20.107 6.296 21.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.028 4.028 3 C -0.140 4.140 4 C -0.077 4.077 5 C -0.132 4.132 6 N 0.549 4.451 7 O -0.385 6.385 8 O -0.369 6.369 9 C -0.054 4.054 10 C -0.056 4.056 11 C -0.169 4.169 12 H 0.116 0.884 13 C -0.202 4.202 14 S -0.019 6.019 15 C -0.101 4.101 16 C -0.556 4.556 17 H 0.103 0.897 18 C -0.124 4.124 19 N -0.526 5.526 20 Si 0.704 3.296 21 H -0.199 1.199 22 H -0.207 1.207 23 H -0.191 1.191 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.164 0.836 28 H 0.169 0.831 29 H 0.185 0.815 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.035 19.971 5.909 21.427 hybrid contribution -1.725 -0.375 0.500 1.835 sum -6.760 19.596 6.408 21.697 Atomic orbital electron populations 1.21056 0.89807 1.04044 1.03667 1.20211 0.97275 0.92050 0.93268 1.20992 0.92419 0.98410 1.02223 1.20991 0.94681 0.96925 0.95109 1.21056 0.79318 0.96822 1.16040 1.43615 1.03642 1.00433 0.97406 1.94495 1.69163 1.20833 1.53993 1.94600 1.68995 1.20470 1.52878 1.21162 0.94313 0.97920 0.92020 1.19268 0.91876 0.94112 1.00309 1.22055 1.00736 0.93596 1.00534 0.88391 1.22098 1.02582 1.01849 0.93692 1.86873 1.25057 1.08136 1.81885 1.21498 0.95495 0.93306 0.99827 1.20455 1.00510 0.92102 1.42504 0.89742 1.24852 0.97999 0.95214 0.94305 1.69863 1.37163 1.01829 1.43720 0.86821 0.85306 0.77954 0.79509 1.19896 1.20718 1.19138 0.89695 0.90073 0.90525 0.83639 0.83137 0.81508 0.91155 0.91162 0.92271 0.94446 0.95178 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.90 9.21 36.00 0.33 -0.57 16 2 C -0.03 -0.25 5.88 -104.63 -0.62 -0.87 16 3 C -0.12 -1.02 9.70 -39.58 -0.38 -1.40 16 4 C -0.06 -0.59 9.56 -39.58 -0.38 -0.97 16 5 C -0.05 -0.67 6.85 -79.95 -0.55 -1.22 16 6 N 0.03 0.47 4.45 33.96 0.15 0.62 16 7 O -0.17 -2.63 18.45 -29.46 -0.54 -3.17 16 8 O -0.15 -2.63 18.45 -29.46 -0.54 -3.17 16 9 C -0.03 -0.49 8.61 -39.58 -0.34 -0.84 16 10 C -0.05 -0.68 4.99 -104.63 -0.52 -1.20 16 11 C -0.04 -0.57 2.31 -27.89 -0.06 -0.64 16 12 H 0.10 1.27 7.01 -51.92 -0.36 0.90 16 13 C -0.14 -1.81 8.89 37.16 0.33 -1.48 16 14 S -0.25 -4.87 18.99 -107.50 -2.04 -6.91 16 15 C 0.05 1.05 4.46 36.00 0.16 1.21 16 16 C -0.52 -14.34 9.68 -34.44 -0.33 -14.67 16 17 H 0.08 2.60 7.96 -52.48 -0.42 2.18 16 18 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 19 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 20 Si 0.88 20.25 27.47 -169.99 -4.67 15.58 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.27 -5.79 6.54 56.52 0.37 -5.42 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.08 0.58 5.41 -51.93 -0.28 0.30 16 26 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 27 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 28 H 0.15 1.26 7.61 -52.49 -0.40 0.86 16 29 H 0.17 2.72 6.03 -52.49 -0.32 2.40 16 30 H 0.07 0.96 6.92 -51.93 -0.36 0.60 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.58 6.88 -51.93 -0.36 0.22 16 33 H 0.04 0.83 6.20 -51.93 -0.32 0.51 16 34 H 0.03 0.66 7.57 -51.92 -0.39 0.27 16 35 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 310.47 15.07 4.68 4.68 Total: -1.00 -30.84 310.47 -8.72 -39.56 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -4.06 Total: -1.05 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: -2.46 Total: -20.47 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.92 Total: -25.05 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -1.09 Total: -6.34 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.67 Total: 15.58 kcal Atomic # 16 Polarization: -4.87 SS G_CDS: -2.04 Total: -6.91 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.84 -8.72 -39.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413015022.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.426 kcal (2) G-P(sol) polarization free energy of solvation -30.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds