Wall clock time and date at job start Tue Mar 31 2020 05:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50691 * 120.00243 * 2 1 4 4 C 1.52996 * 109.47400 * 124.99932 * 3 2 1 5 5 S 1.81403 * 109.47319 * 180.02562 * 4 3 2 6 6 O 1.42099 * 110.54388 * 64.66253 * 5 4 3 7 7 O 1.42107 * 110.53829 * 287.91660 * 5 4 3 8 8 N 1.65600 * 104.45125 * 176.29287 * 5 4 3 9 9 C 1.39681 * 120.00044 * 292.80546 * 8 5 4 10 10 C 1.39332 * 119.95376 * 284.68273 * 9 8 5 11 11 C 1.38478 * 120.42722 * 180.02562 * 10 9 8 12 12 C 1.37686 * 120.32358 * 359.97438 * 11 10 9 13 13 C 1.40744 * 119.89205 * 0.02562 * 12 11 10 14 14 C 1.41412 * 120.20783 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00096 * 332.29870 * 14 13 12 16 16 C 1.39934 * 120.00344 * 152.29491 * 14 13 12 17 17 N 1.30831 * 119.99713 * 348.40782 * 16 14 13 18 18 Si 1.86796 * 120.00074 * 168.40542 * 16 14 13 19 19 H 1.48507 * 109.47107 * 90.00284 * 18 16 14 20 20 H 1.48496 * 109.47144 * 209.99980 * 18 16 14 21 21 H 1.48498 * 109.47148 * 330.00296 * 18 16 14 22 22 C 1.38276 * 119.95253 * 104.67537 * 9 8 5 23 23 H 1.08002 * 119.99898 * 180.02562 * 1 2 3 24 24 H 1.07995 * 120.00029 * 0.02562 * 1 2 3 25 25 H 1.08008 * 119.99869 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47376 * 4.99525 * 3 2 1 27 27 H 1.09003 * 109.47251 * 244.99720 * 3 2 1 28 28 H 1.08996 * 109.47568 * 59.99801 * 4 3 2 29 29 H 1.09003 * 109.47055 * 299.99647 * 4 3 2 30 30 H 0.97004 * 119.99865 * 112.80083 * 8 5 4 31 31 H 1.08004 * 119.78432 * 359.97438 * 10 9 8 32 32 H 1.07998 * 119.83915 * 179.97438 * 11 10 9 33 33 H 1.07997 * 120.05234 * 180.02562 * 12 11 10 34 34 H 0.97001 * 119.99673 * 180.02562 * 17 16 14 35 35 H 1.08001 * 120.16347 * 0.27953 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1816 5 16 3.9415 2.9043 1.1820 6 8 3.0545 3.9917 1.4056 7 8 4.8857 2.9354 0.1204 8 7 4.8695 2.8456 2.5523 9 6 4.2613 2.8733 3.8094 10 6 3.7485 4.0690 4.3080 11 6 3.1440 4.1077 5.5533 12 6 3.0427 2.9636 6.3127 13 6 3.5561 1.7484 5.8222 14 6 3.4551 0.5693 6.5963 15 1 3.4166 0.6323 7.6738 16 6 3.4050 -0.6792 5.9663 17 7 3.2231 -0.7523 4.6728 18 14 3.5980 -2.2413 6.9722 19 1 2.2637 -2.6994 7.4361 20 1 4.2194 -3.2970 6.1327 21 1 4.4642 -1.9695 8.1473 22 6 4.1688 1.7139 4.5573 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8500 -0.9354 0.0004 26 1 1.3586 2.1316 0.0895 27 1 2.6214 1.4025 -0.9314 28 1 3.7399 0.5065 1.0921 29 1 2.4772 1.2356 2.1130 30 1 5.8355 2.7920 2.4819 31 1 3.8237 4.9717 3.7198 32 1 2.7501 5.0398 5.9307 33 1 2.5700 2.9987 7.2831 34 1 3.1880 -1.6178 4.2361 35 1 4.5699 0.7873 4.1738 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451111017.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:47 Heat of formation + Delta-G solvation = -43.509353 kcal Electronic energy + Delta-G solvation = -19910.799455 eV Core-core repulsion = 16807.758131 eV Total energy + Delta-G solvation = -3103.041324 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.00790 -36.64698 -35.70713 -35.51364 -34.52812 -33.23037 -30.53343 -29.65300 -27.92462 -25.35500 -23.90081 -21.12623 -20.89425 -19.84688 -18.91686 -17.62440 -17.30221 -16.14830 -15.91356 -15.53144 -15.13044 -14.76984 -14.57555 -13.88153 -13.69609 -13.03702 -13.00633 -12.63387 -12.39606 -12.06671 -11.74954 -11.67993 -11.59136 -11.39110 -11.24149 -11.18045 -11.09672 -10.72548 -10.66805 -10.35536 -10.05422 -9.86187 -9.37139 -9.31252 -8.96020 -7.51310 -7.49650 -6.83717 -4.49836 0.65902 2.34136 2.59509 2.78629 3.00851 3.04588 3.11901 3.18548 3.85662 4.13263 4.50061 4.63044 4.85901 4.92536 5.13688 5.35142 5.45511 5.56161 5.77076 5.94866 6.06128 6.21746 6.28552 6.48317 6.65757 6.71471 6.79248 6.93668 7.04078 7.17784 7.20510 7.63379 7.73907 7.87609 7.92930 8.16369 8.49830 8.76414 8.80170 10.10549 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.013806 B = 0.007079 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.599198 B = 3954.548094 C = 5181.657143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.138 4.138 3 C -0.083 4.083 4 C -0.618 4.618 5 S 2.608 3.392 6 O -0.952 6.952 7 O -0.977 6.977 8 N -1.056 6.056 9 C 0.119 3.881 10 C -0.212 4.212 11 C -0.094 4.094 12 C -0.210 4.210 13 C 0.108 3.892 14 C -0.460 4.460 15 H 0.078 0.922 16 C 0.075 3.925 17 N -0.804 5.804 18 Si 0.910 3.090 19 H -0.270 1.270 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.152 4.152 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.112 0.888 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.132 0.868 29 H 0.148 0.852 30 H 0.412 0.588 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.279 0.721 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.852 -0.817 -6.066 6.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.157 4.157 3 C -0.122 4.122 4 C -0.748 4.748 5 S 2.703 3.297 6 O -0.942 6.942 7 O -0.967 6.967 8 N -0.810 5.810 9 C 0.026 3.974 10 C -0.234 4.234 11 C -0.113 4.113 12 C -0.230 4.230 13 C 0.105 3.895 14 C -0.491 4.491 15 H 0.097 0.903 16 C -0.142 4.142 17 N -0.430 5.430 18 Si 0.735 3.265 19 H -0.195 1.195 20 H -0.202 1.202 21 H -0.186 1.186 22 C -0.174 4.174 23 H 0.116 0.884 24 H 0.116 0.884 25 H 0.130 0.870 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.150 0.850 29 H 0.167 0.833 30 H 0.248 0.752 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.062 -0.259 -6.903 6.989 hybrid contribution 0.301 -1.580 0.779 1.788 sum -0.760 -1.839 -6.124 6.439 Atomic orbital electron populations 1.23856 0.95881 1.01953 1.01429 1.22728 0.95871 0.97687 0.99456 1.20455 0.97751 0.97958 0.96036 1.30515 1.12690 1.23547 1.08046 1.05061 0.74770 0.77251 0.72625 1.93583 1.67324 1.48811 1.84476 1.93547 1.60760 1.87802 1.54605 1.52831 1.18087 1.91054 1.19017 1.17195 1.00814 0.94150 0.85260 1.20707 1.09075 0.96201 0.97451 1.20489 0.99383 0.97041 0.94386 1.21173 1.07167 0.93844 1.00821 1.17494 0.88272 0.92172 0.91570 1.19545 1.44756 0.90009 0.94743 0.90342 1.25854 0.92190 1.01032 0.95102 1.69739 1.36010 1.27184 1.10100 0.86279 0.79402 0.80356 0.80506 1.19538 1.20201 1.18551 1.21630 1.02739 0.96219 0.96821 0.88361 0.88449 0.86979 0.90079 0.90082 0.84960 0.83339 0.75162 0.88123 0.88643 0.88544 0.90963 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.36 14.32 29.01 0.42 -1.94 16 2 C -0.14 -1.80 9.52 -36.03 -0.34 -2.15 16 3 C -0.08 -1.14 5.66 -27.89 -0.16 -1.30 16 4 C -0.62 -9.65 6.06 37.16 0.23 -9.42 16 5 S 2.61 45.52 5.44 -107.50 -0.59 44.93 16 6 O -0.95 -19.46 16.84 -57.54 -0.97 -20.43 16 7 O -0.98 -18.14 18.08 -57.54 -1.04 -19.18 16 8 N -1.06 -19.23 5.59 32.37 0.18 -19.04 16 9 C 0.12 2.57 5.74 -83.86 -0.48 2.09 16 10 C -0.21 -4.68 9.17 -39.09 -0.36 -5.03 16 11 C -0.09 -2.03 10.02 -39.69 -0.40 -2.43 16 12 C -0.21 -4.84 9.79 -38.84 -0.38 -5.22 16 13 C 0.11 2.67 5.56 -106.85 -0.59 2.08 16 14 C -0.46 -11.38 9.07 -37.74 -0.34 -11.72 16 15 H 0.08 1.87 7.87 -52.49 -0.41 1.46 16 16 C 0.07 1.74 5.24 -17.34 -0.09 1.65 16 17 N -0.80 -18.89 10.82 55.55 0.60 -18.29 16 18 Si 0.91 17.72 29.57 -169.99 -5.03 12.69 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 21 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 22 C -0.15 -3.56 8.57 -38.68 -0.33 -3.89 16 23 H 0.10 1.05 8.06 -52.49 -0.42 0.62 16 24 H 0.10 1.12 7.84 -52.49 -0.41 0.71 16 25 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 26 H 0.08 1.07 7.79 -51.93 -0.40 0.67 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.13 1.86 8.14 -51.93 -0.42 1.44 16 29 H 0.15 2.64 8.14 -51.92 -0.42 2.22 16 30 H 0.41 6.49 8.92 -34.47 -0.31 6.19 16 31 H 0.10 2.15 7.83 -52.48 -0.41 1.73 16 32 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 34 H 0.28 6.03 8.30 -40.82 -0.34 5.69 16 35 H 0.13 3.05 6.18 -52.49 -0.32 2.73 16 LS Contribution 317.76 15.07 4.79 4.79 Total: -1.00 -29.05 317.76 -9.25 -38.30 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -4.37 Total: 13.52 kcal Atomic # 6 Polarization: -34.46 SS G_CDS: -2.84 Total: -37.29 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.78 Total: -37.34 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -2.01 Total: -39.61 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Atomic # 16 Polarization: 45.52 SS G_CDS: -0.59 Total: 44.93 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.05 -9.25 -38.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451111017.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.204 kcal (2) G-P(sol) polarization free energy of solvation -29.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds