Wall clock time and date at job start Tue Mar 31 2020 05:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33818 * 124.52485 * 2 1 4 4 C 1.37468 * 115.09914 * 180.02562 * 3 2 1 5 5 C 1.36644 * 113.30136 * 359.97438 * 4 3 2 6 6 C 1.46585 * 125.45938 * 180.02562 * 5 4 3 7 7 O 1.21700 * 119.99775 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00001 * 180.02562 * 6 5 4 9 9 C 1.47026 * 125.65100 * 0.02708 * 8 6 5 10 10 C 1.54316 * 107.27365 * 180.79395 * 9 8 6 11 11 C 1.55160 * 102.94268 * 22.19228 * 10 9 8 12 12 O 1.42896 * 111.00523 * 82.57361 * 11 10 9 13 13 C 1.50703 * 111.00321 * 206.38737 * 11 10 9 14 14 H 1.08001 * 120.00004 * 0.02562 * 13 11 10 15 15 C 1.37879 * 120.00064 * 179.97438 * 13 11 10 16 16 N 1.31519 * 119.99829 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 120.00254 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47244 * 89.99838 * 17 15 13 19 19 H 1.48493 * 109.47344 * 209.99839 * 17 15 13 20 20 H 1.48507 * 109.46922 * 330.00128 * 17 15 13 21 21 C 1.47425 * 125.64767 * 179.71710 * 8 6 5 22 22 S 1.70620 * 124.52235 * 180.35803 * 2 1 3 23 23 H 1.08989 * 109.47170 * 90.00069 * 1 2 3 24 24 H 1.09008 * 109.46761 * 209.99942 * 1 2 3 25 25 H 1.09001 * 109.46688 * 329.99758 * 1 2 3 26 26 H 1.08001 * 122.44427 * 0.05690 * 3 2 1 27 27 H 1.08007 * 123.34729 * 179.97438 * 4 3 2 28 28 H 1.09004 * 109.87531 * 300.21113 * 9 8 6 29 29 H 1.08996 * 109.88343 * 61.21833 * 9 8 6 30 30 H 1.08997 * 110.72381 * 140.55486 * 10 9 8 31 31 H 1.09002 * 110.72355 * 263.82891 * 10 9 8 32 32 H 0.96697 * 113.99722 * 179.97438 * 12 11 10 33 33 H 0.96996 * 119.99737 * 179.97438 * 16 15 13 34 34 H 1.09001 * 110.36478 * 274.97629 * 21 8 6 35 35 H 1.08998 * 110.36859 * 37.30006 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2655 1.1025 0.0000 4 6 3.6216 0.8774 -0.0006 5 6 3.9493 -0.4492 -0.0005 6 6 5.3123 -0.9884 -0.0004 7 8 6.2658 -0.2322 0.0000 8 7 5.5096 -2.3216 -0.0008 9 6 4.4532 -3.3442 -0.0019 10 6 5.1487 -4.7216 0.0184 11 6 6.5493 -4.3951 0.6009 12 8 6.5091 -4.3346 2.0280 13 6 7.5750 -5.3957 0.1342 14 1 7.2827 -6.2032 -0.5207 15 6 8.8868 -5.2797 0.5424 16 7 9.2431 -4.2954 1.3387 17 14 10.1584 -6.5195 -0.0366 18 1 10.7708 -6.0454 -1.3037 19 1 11.2131 -6.6668 0.9981 20 1 9.5020 -7.8319 -0.2649 21 6 6.8204 -2.9962 -0.0068 22 16 2.4740 -1.4057 -0.0088 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8901 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.8429 2.0964 0.0009 27 1 4.3550 1.6702 -0.0010 28 1 3.8276 -3.2317 0.8836 29 1 3.8441 -3.2471 -0.9006 30 1 4.6132 -5.4145 0.6673 31 1 5.2351 -5.1249 -0.9906 32 1 7.3618 -4.1336 2.4372 33 1 10.1659 -4.2140 1.6261 34 1 7.1935 -3.0914 -1.0265 35 1 7.5326 -2.4468 0.6089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843157.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:33 Heat of formation + Delta-G solvation = -55.067256 kcal Electronic energy + Delta-G solvation = -19887.982957 eV Core-core repulsion = 16784.440445 eV Total energy + Delta-G solvation = -3103.542512 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.48291 -37.99637 -36.86407 -34.33869 -32.17951 -32.03290 -30.26099 -28.26462 -27.09360 -25.05330 -23.55450 -22.56312 -20.57056 -19.64604 -18.16568 -17.61808 -17.14948 -15.83204 -15.33597 -15.25500 -15.07330 -14.49368 -14.06889 -13.94079 -13.26656 -13.19946 -13.04206 -12.94081 -12.30484 -12.14921 -12.05507 -11.86943 -11.66622 -11.51733 -11.11897 -10.97742 -10.70694 -10.52410 -10.44961 -10.20325 -9.57535 -9.40992 -8.72099 -8.60890 -8.51350 -8.39018 -7.81056 -6.32103 -4.42069 0.65770 1.58776 2.02123 2.51665 3.18909 3.26893 3.29228 3.55587 3.63533 4.23839 4.72594 4.90440 4.99943 5.08243 5.30667 5.30986 5.37233 5.53882 5.57358 5.74622 5.76134 5.94930 5.99418 6.10833 6.30126 6.43013 6.45377 6.66100 6.79026 6.91369 7.20875 7.29455 7.71167 7.94778 8.11610 8.60196 8.65459 9.27954 9.42829 10.75308 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.038208 B = 0.004502 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.658363 B = 6217.817540 C = 6647.534308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.228 4.228 3 C -0.155 4.155 4 C -0.066 4.066 5 C -0.250 4.250 6 C 0.591 3.409 7 O -0.542 6.542 8 N -0.603 5.603 9 C 0.092 3.908 10 C -0.112 4.112 11 C 0.250 3.750 12 O -0.584 6.584 13 C -0.539 4.539 14 H 0.068 0.932 15 C 0.071 3.929 16 N -0.895 5.895 17 Si 0.906 3.094 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.094 3.906 22 S 0.219 5.781 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.137 0.863 27 H 0.150 0.850 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.387 0.613 33 H 0.272 0.728 34 H 0.063 0.937 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.045 5.282 -2.887 16.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.347 4.347 3 C -0.185 4.185 4 C -0.099 4.099 5 C -0.371 4.371 6 C 0.379 3.621 7 O -0.422 6.422 8 N -0.335 5.335 9 C -0.033 4.033 10 C -0.151 4.151 11 C 0.209 3.791 12 O -0.394 6.394 13 C -0.577 4.577 14 H 0.087 0.913 15 C -0.132 4.132 16 N -0.534 5.534 17 Si 0.733 3.267 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.027 4.027 22 S 0.488 5.512 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.155 0.845 27 H 0.168 0.832 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.239 0.761 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.347 4.142 -2.897 16.158 hybrid contribution 1.565 1.269 -0.205 2.025 sum -13.782 5.411 -3.102 15.127 Atomic orbital electron populations 1.20327 0.87880 1.03115 1.02661 1.24591 1.01687 0.99718 1.08701 1.19877 0.92620 0.99284 1.06749 1.20679 0.96066 0.95203 0.97916 1.24761 0.97097 0.97873 1.17347 1.16596 0.86536 0.81312 0.77655 1.90796 1.41931 1.57306 1.52175 1.48605 1.10417 1.03857 1.70572 1.22124 0.90650 0.90199 1.00294 1.22608 0.97431 0.93467 1.01545 1.19593 0.90373 0.89500 0.79623 1.86061 1.38828 1.94161 1.20367 1.21491 0.92933 1.12373 1.30939 0.91338 1.25090 0.98639 0.95384 0.94097 1.69568 1.19236 1.30593 1.33973 0.86366 0.80575 0.81249 0.78520 1.20373 1.20953 1.19634 1.23358 0.82431 0.95572 1.01343 1.83469 0.93876 1.06152 1.67746 0.90770 0.91277 0.90755 0.84491 0.83245 0.91486 0.92092 0.90327 0.90143 0.76079 0.91794 0.91835 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.31 36.01 0.37 -0.29 16 2 C -0.23 -2.65 6.28 -35.86 -0.23 -2.88 16 3 C -0.15 -1.90 9.99 -41.41 -0.41 -2.31 16 4 C -0.07 -0.99 10.01 -40.44 -0.40 -1.39 16 5 C -0.25 -4.29 6.38 -36.79 -0.23 -4.52 16 6 C 0.59 12.62 7.82 -12.90 -0.10 12.52 16 7 O -0.54 -13.30 17.10 5.19 0.09 -13.21 16 8 N -0.60 -12.82 3.33 -172.10 -0.57 -13.39 16 9 C 0.09 1.64 5.18 -3.07 -0.02 1.62 16 10 C -0.11 -2.19 6.13 -24.90 -0.15 -2.34 16 11 C 0.25 5.99 0.89 -89.62 -0.08 5.91 16 12 O -0.58 -14.92 13.18 -35.23 -0.46 -15.39 16 13 C -0.54 -13.79 8.25 -34.44 -0.28 -14.07 16 14 H 0.07 1.70 7.76 -52.49 -0.41 1.29 16 15 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 16 N -0.89 -23.69 10.72 55.43 0.59 -23.10 16 17 Si 0.91 20.08 29.54 -169.99 -5.02 15.06 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 C 0.09 2.27 5.62 -2.53 -0.01 2.25 16 22 S 0.22 2.92 18.37 -107.50 -1.98 0.94 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.15 2.18 8.06 -52.48 -0.42 1.75 16 28 H 0.07 1.14 6.86 -51.93 -0.36 0.78 16 29 H 0.06 0.93 6.94 -51.93 -0.36 0.57 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.08 1.45 8.01 -51.93 -0.42 1.03 16 32 H 0.39 10.26 6.93 45.56 0.32 10.58 16 33 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.06 1.55 8.03 -51.93 -0.42 1.13 16 35 H 0.08 2.30 7.64 -51.93 -0.40 1.90 16 LS Contribution 304.89 15.07 4.59 4.59 Total: -1.00 -29.54 304.89 -8.11 -37.65 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -3.71 Total: 10.60 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -1.65 Total: -3.76 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.02 Total: -36.49 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.38 Total: -28.60 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.98 Total: 0.94 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.54 -8.11 -37.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843157.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.413 kcal (2) G-P(sol) polarization free energy of solvation -29.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds