Wall clock time and date at job start Tue Mar 31 2020 05:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33818 * 124.52485 * 2 1 4 4 C 1.37468 * 115.09914 * 180.02562 * 3 2 1 5 5 C 1.36644 * 113.30136 * 359.97438 * 4 3 2 6 6 C 1.46585 * 125.45938 * 180.02562 * 5 4 3 7 7 O 1.21700 * 119.99775 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00001 * 180.02562 * 6 5 4 9 9 C 1.47026 * 125.65100 * 0.02708 * 8 6 5 10 10 C 1.54316 * 107.27365 * 180.79395 * 9 8 6 11 11 C 1.55160 * 102.94268 * 22.19228 * 10 9 8 12 12 O 1.42896 * 111.00523 * 82.57361 * 11 10 9 13 13 C 1.50703 * 111.00321 * 206.38737 * 11 10 9 14 14 H 1.08001 * 120.00004 * 0.02562 * 13 11 10 15 15 C 1.37879 * 120.00064 * 179.97438 * 13 11 10 16 16 N 1.31519 * 119.99829 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 120.00254 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47244 * 89.99838 * 17 15 13 19 19 H 1.48493 * 109.47344 * 209.99839 * 17 15 13 20 20 H 1.48507 * 109.46922 * 330.00128 * 17 15 13 21 21 C 1.47425 * 125.64767 * 179.71710 * 8 6 5 22 22 S 1.70620 * 124.52235 * 180.35803 * 2 1 3 23 23 H 1.08989 * 109.47170 * 90.00069 * 1 2 3 24 24 H 1.09008 * 109.46761 * 209.99942 * 1 2 3 25 25 H 1.09001 * 109.46688 * 329.99758 * 1 2 3 26 26 H 1.08001 * 122.44427 * 0.05690 * 3 2 1 27 27 H 1.08007 * 123.34729 * 179.97438 * 4 3 2 28 28 H 1.09004 * 109.87531 * 300.21113 * 9 8 6 29 29 H 1.08996 * 109.88343 * 61.21833 * 9 8 6 30 30 H 1.08997 * 110.72381 * 140.55486 * 10 9 8 31 31 H 1.09002 * 110.72355 * 263.82891 * 10 9 8 32 32 H 0.96697 * 113.99722 * 179.97438 * 12 11 10 33 33 H 0.96996 * 119.99737 * 179.97438 * 16 15 13 34 34 H 1.09001 * 110.36478 * 274.97629 * 21 8 6 35 35 H 1.08998 * 110.36859 * 37.30006 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2655 1.1025 0.0000 4 6 3.6216 0.8774 -0.0006 5 6 3.9493 -0.4492 -0.0005 6 6 5.3123 -0.9884 -0.0004 7 8 6.2658 -0.2322 0.0000 8 7 5.5096 -2.3216 -0.0008 9 6 4.4532 -3.3442 -0.0019 10 6 5.1487 -4.7216 0.0184 11 6 6.5493 -4.3951 0.6009 12 8 6.5091 -4.3346 2.0280 13 6 7.5750 -5.3957 0.1342 14 1 7.2827 -6.2032 -0.5207 15 6 8.8868 -5.2797 0.5424 16 7 9.2431 -4.2954 1.3387 17 14 10.1584 -6.5195 -0.0366 18 1 10.7708 -6.0454 -1.3037 19 1 11.2131 -6.6668 0.9981 20 1 9.5020 -7.8319 -0.2649 21 6 6.8204 -2.9962 -0.0068 22 16 2.4740 -1.4057 -0.0088 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8901 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.8429 2.0964 0.0009 27 1 4.3550 1.6702 -0.0010 28 1 3.8276 -3.2317 0.8836 29 1 3.8441 -3.2471 -0.9006 30 1 4.6132 -5.4145 0.6673 31 1 5.2351 -5.1249 -0.9906 32 1 7.3618 -4.1336 2.4372 33 1 10.1659 -4.2140 1.6261 34 1 7.1935 -3.0914 -1.0265 35 1 7.5326 -2.4468 0.6089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843157.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:32 Heat of formation + Delta-G solvation = -75.352468 kcal Electronic energy + Delta-G solvation = -19888.862590 eV Core-core repulsion = 16784.440445 eV Total energy + Delta-G solvation = -3104.422145 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.12080 -39.35230 -38.36489 -36.17507 -34.17563 -33.05138 -31.90264 -29.90683 -28.46599 -26.73011 -24.80093 -23.94137 -21.94578 -21.44837 -19.39011 -19.30568 -18.85795 -17.24015 -16.95717 -16.81119 -16.73798 -16.17474 -15.27294 -15.10182 -14.83438 -14.76892 -14.66397 -13.97975 -13.73950 -13.53640 -13.45008 -13.27318 -12.93590 -12.87404 -12.70420 -12.68624 -12.35361 -12.27181 -12.17192 -11.64284 -11.25667 -11.17592 -10.66963 -10.38075 -9.84701 -9.54627 -9.37327 -8.27558 -6.45070 -0.49439 0.48697 0.96857 1.38166 1.42724 1.44674 1.54810 1.96776 2.14504 2.38152 2.98555 3.53257 3.70259 3.90065 4.05772 4.13175 4.25027 4.29682 4.42235 4.49650 4.66779 4.70853 4.78260 4.95367 5.00433 5.06284 5.10598 5.19234 5.25516 5.35551 5.41401 5.45767 5.73912 6.00313 6.48803 6.64241 7.00396 7.27674 7.36099 8.78469 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.038208 B = 0.004502 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.658363 B = 6217.817540 C = 6647.534308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.202 4.202 3 C -0.166 4.166 4 C -0.055 4.055 5 C -0.306 4.306 6 C 0.584 3.416 7 O -0.594 6.594 8 N -0.610 5.610 9 C 0.094 3.906 10 C -0.107 4.107 11 C 0.234 3.766 12 O -0.590 6.590 13 C -0.556 4.556 14 H 0.075 0.925 15 C 0.025 3.975 16 N -0.920 5.920 17 Si 0.968 3.032 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.262 1.262 21 C 0.106 3.894 22 S 0.249 5.751 23 H 0.093 0.907 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.168 0.832 27 H 0.143 0.857 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.378 0.622 33 H 0.271 0.729 34 H 0.050 0.950 35 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.393 4.839 -3.652 19.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.322 4.322 3 C -0.195 4.195 4 C -0.090 4.090 5 C -0.425 4.425 6 C 0.375 3.625 7 O -0.478 6.478 8 N -0.340 5.340 9 C -0.029 4.029 10 C -0.145 4.145 11 C 0.193 3.807 12 O -0.399 6.399 13 C -0.594 4.594 14 H 0.093 0.907 15 C -0.176 4.176 16 N -0.560 5.560 17 Si 0.793 3.207 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.186 1.186 21 C -0.017 4.017 22 S 0.518 5.482 23 H 0.111 0.889 24 H 0.100 0.900 25 H 0.112 0.888 26 H 0.186 0.814 27 H 0.160 0.840 28 H 0.097 0.903 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.229 0.771 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.741 3.668 -3.670 19.446 hybrid contribution 2.476 1.489 0.037 2.889 sum -16.265 5.157 -3.633 17.446 Atomic orbital electron populations 1.20549 0.84710 1.04745 1.04327 1.25134 1.03563 0.98470 1.05026 1.20082 0.91105 1.01129 1.07213 1.20914 0.97628 0.94379 0.96082 1.24412 0.96459 0.99462 1.22211 1.17250 0.88066 0.80843 0.76344 1.90740 1.44167 1.58362 1.54529 1.48643 1.10034 1.04641 1.70729 1.22285 0.89903 0.88195 1.02484 1.22632 0.94702 0.94821 1.02302 1.19853 0.93102 0.88972 0.78763 1.86049 1.38201 1.94144 1.21544 1.21847 0.93676 1.12836 1.31064 0.90696 1.25874 1.00566 0.96937 0.94206 1.69692 1.19410 1.31988 1.34921 0.85394 0.78131 0.79354 0.77796 1.20287 1.21003 1.18634 1.22949 0.83362 0.95814 0.99568 1.83147 0.91597 1.06259 1.67230 0.88878 0.90022 0.88804 0.81419 0.83975 0.90305 0.88823 0.88866 0.88528 0.77141 0.91961 0.93154 0.93982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.92 10.31 71.24 0.73 -0.19 16 2 C -0.20 -3.89 6.28 24.68 0.15 -3.74 16 3 C -0.17 -3.55 9.99 21.08 0.21 -3.34 16 4 C -0.06 -1.63 10.01 21.71 0.22 -1.41 16 5 C -0.31 -10.39 6.38 24.08 0.15 -10.24 16 6 C 0.58 25.91 7.82 86.42 0.68 26.59 16 7 O -0.59 -31.13 17.10 -4.35 -0.07 -31.20 16 8 N -0.61 -26.57 3.33 -816.61 -2.72 -29.29 16 9 C 0.09 3.24 5.18 86.73 0.45 3.69 16 10 C -0.11 -4.02 6.13 31.78 0.19 -3.82 16 11 C 0.23 11.40 0.89 -10.15 -0.01 11.39 16 12 O -0.59 -30.98 13.18 -148.98 -1.96 -32.94 16 13 C -0.56 -28.72 8.25 25.60 0.21 -28.51 16 14 H 0.07 3.68 7.76 -2.91 -0.02 3.65 16 15 C 0.02 1.28 5.29 84.65 0.45 1.73 16 16 N -0.92 -50.63 10.72 21.45 0.23 -50.40 16 17 Si 0.97 41.55 29.54 68.60 2.03 43.57 16 18 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 19 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 21 C 0.11 5.35 5.62 86.86 0.49 5.84 16 22 S 0.25 5.95 18.37 -56.49 -1.04 4.91 16 23 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 27 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 28 H 0.08 2.52 6.86 -2.38 -0.02 2.51 16 29 H 0.09 2.61 6.94 -2.39 -0.02 2.59 16 30 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 31 H 0.10 3.29 8.01 -2.39 -0.02 3.27 16 32 H 0.38 21.01 6.93 -74.06 -0.51 20.50 16 33 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 34 H 0.05 2.60 8.03 -2.39 -0.02 2.58 16 35 H 0.04 2.45 7.64 -2.39 -0.02 2.43 16 Total: -1.00 -67.70 304.89 0.99 -66.71 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 0.60 Total: 30.65 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 3.93 Total: -2.00 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -2.49 Total: -79.69 kcal Atomic # 8 Polarization: -62.11 SS G_CDS: -2.04 Total: -64.14 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 16 Polarization: 5.95 SS G_CDS: -1.04 Total: 4.91 kcal Total: -67.70 0.99 -66.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843157.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.644 kcal (2) G-P(sol) polarization free energy of solvation -67.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds