Wall clock time and date at job start Tue Mar 31 2020 05:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00088 * 2 1 4 4 H 1.48501 * 109.46826 * 239.99477 * 3 2 1 5 5 H 1.48497 * 109.47060 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47306 * 119.99721 * 3 2 1 7 7 C 1.37882 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99420 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00258 * 0.02562 * 7 2 1 10 10 O 1.42904 * 110.64072 * 298.31370 * 9 7 2 11 11 C 1.55158 * 110.71883 * 61.45003 * 9 7 2 12 12 C 1.54917 * 101.57978 * 153.86614 * 11 9 7 13 13 N 1.47422 * 104.83074 * 322.98980 * 12 11 9 14 14 C 1.34776 * 125.64527 * 204.09182 * 13 12 11 15 15 O 1.21285 * 119.99841 * 180.02562 * 14 13 12 16 16 C 1.50699 * 120.00365 * 0.03003 * 14 13 12 17 17 C 1.50699 * 109.47121 * 180.02562 * 16 14 13 18 18 C 1.38423 * 122.54351 * 89.99935 * 17 16 14 19 19 C 1.33389 * 114.92045 * 179.97438 * 18 17 16 20 20 S 1.75886 * 109.59456 * 359.97438 * 19 18 17 21 21 C 1.33388 * 122.53370 * 269.70110 * 17 16 14 22 22 C 1.47020 * 108.70191 * 24.12901 * 13 12 11 23 23 H 0.97005 * 120.00230 * 0.02562 * 1 2 3 24 24 H 0.96698 * 113.99913 * 61.68644 * 10 9 7 25 25 H 1.08998 * 111.00511 * 35.79146 * 11 9 7 26 26 H 1.08996 * 111.04098 * 271.95479 * 11 9 7 27 27 H 1.08998 * 110.36726 * 81.82993 * 12 11 9 28 28 H 1.09005 * 110.36534 * 204.15515 * 12 11 9 29 29 H 1.09004 * 109.47135 * 299.99842 * 16 14 13 30 30 H 1.08993 * 109.47035 * 59.99497 * 16 14 13 31 31 H 1.07998 * 122.53354 * 359.97438 * 18 17 16 32 32 H 1.07995 * 125.19931 * 180.02562 * 19 18 17 33 33 H 1.08000 * 125.20957 * 0.02992 * 21 17 16 34 34 H 1.09000 * 109.88493 * 239.51822 * 22 13 12 35 35 H 1.09003 * 109.87996 * 118.35911 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4494 -2.6180 1.1776 11 6 0.3764 -2.6280 -1.2745 12 6 0.2719 -4.1663 -1.4258 13 7 1.5929 -4.6763 -1.0160 14 6 2.1330 -5.8517 -1.3946 15 8 3.2322 -6.1711 -0.9937 16 6 1.3712 -6.7691 -2.3160 17 6 2.1892 -8.0065 -2.5819 18 6 2.1049 -9.1391 -1.7905 19 6 2.8962 -10.1459 -2.1640 20 16 3.8136 -9.6775 -3.5896 21 6 3.0451 -8.0954 -3.6011 22 6 2.2232 -3.6910 -0.1253 23 1 -0.4851 0.8401 -0.0004 24 1 -0.2287 -1.9339 1.2623 25 1 0.8742 -2.1836 -2.1364 26 1 -0.6067 -2.1829 -1.1214 27 1 -0.5063 -4.5597 -0.7718 28 1 0.0675 -4.4324 -2.4629 29 1 0.4275 -7.0512 -1.8492 30 1 1.1720 -6.2557 -3.2566 31 1 1.4481 -9.2027 -0.9355 32 1 2.9627 -11.1026 -1.6674 33 1 3.2381 -7.3148 -4.3221 34 1 3.1678 -3.3552 -0.5532 35 1 2.3950 -4.1344 0.8555 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843954.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:43 Heat of formation + Delta-G solvation = -50.360856 kcal Electronic energy + Delta-G solvation = -19642.182145 eV Core-core repulsion = 16538.843718 eV Total energy + Delta-G solvation = -3103.338427 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.71992 -38.11714 -36.89047 -34.31293 -32.23783 -31.32792 -29.68627 -28.56206 -27.65248 -25.06153 -23.24105 -22.21563 -19.91895 -19.07122 -18.45799 -17.50977 -17.26900 -16.57106 -15.73481 -15.05517 -14.92766 -14.68801 -14.25696 -13.77836 -13.13052 -12.98431 -12.95674 -12.69845 -12.19310 -12.14701 -12.01809 -11.72046 -11.42511 -11.37251 -11.36056 -10.89916 -10.79555 -10.64823 -10.52394 -10.13454 -9.49306 -9.34013 -8.77106 -8.68799 -8.35185 -8.25209 -8.01235 -6.30806 -4.38318 1.03174 1.67522 1.97666 2.67630 3.07464 3.20817 3.25440 3.29167 3.65414 4.25506 4.82850 4.92542 4.96193 5.08520 5.27920 5.38493 5.48839 5.57168 5.65668 5.73494 5.89092 5.99545 6.02553 6.20418 6.39733 6.43930 6.48251 6.68491 6.88865 6.95594 7.27287 7.32767 7.70986 8.00372 8.11332 8.62387 8.66170 9.27992 9.37055 10.76670 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.040397 B = 0.003567 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.951133 B = 7848.745350 C = 8068.591303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.063 0.937 9 C 0.247 3.753 10 O -0.585 6.585 11 C -0.135 4.135 12 C 0.094 3.906 13 N -0.610 5.610 14 C 0.522 3.478 15 O -0.546 6.546 16 C -0.079 4.079 17 C -0.078 4.078 18 C -0.118 4.118 19 C -0.215 4.215 20 S 0.083 5.917 21 C -0.198 4.198 22 C 0.124 3.876 23 H 0.269 0.731 24 H 0.382 0.618 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.139 0.861 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.071 0.929 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.751 -13.968 -7.365 15.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.173 4.173 12 C -0.029 4.029 13 N -0.343 5.343 14 C 0.310 3.690 15 O -0.425 6.425 16 C -0.121 4.121 17 C -0.091 4.091 18 C -0.148 4.148 19 C -0.350 4.350 20 S 0.346 5.654 21 C -0.333 4.333 22 C 0.002 3.998 23 H 0.078 0.922 24 H 0.232 0.768 25 H 0.085 0.915 26 H 0.106 0.894 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.156 0.844 32 H 0.180 0.820 33 H 0.180 0.820 34 H 0.089 0.911 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.193 -15.342 -7.984 17.337 hybrid contribution -1.034 2.198 0.769 2.547 sum 0.160 -13.145 -7.215 14.996 Atomic orbital electron populations 1.69683 1.05937 1.27752 1.50184 1.24979 0.95035 0.99497 0.93445 0.86473 0.79555 0.82040 0.78914 1.20069 1.21102 1.19976 1.21487 0.93672 0.90252 1.52005 0.91842 1.19452 0.86969 0.90680 0.82231 1.86131 1.51794 1.56472 1.45024 1.23299 1.02878 0.90185 1.00965 1.22532 0.84378 0.97667 0.98338 1.48665 1.19423 1.18190 1.48031 1.20041 0.86345 0.80796 0.81826 1.90682 1.20718 1.74058 1.57019 1.20354 0.98500 0.92624 1.00613 1.18399 0.99482 0.95621 0.95569 1.20041 1.01395 0.92423 1.00956 1.25472 1.03352 1.03936 1.02233 1.84089 1.44251 1.09347 1.27731 1.25382 1.02629 1.00717 1.04610 1.22047 0.96667 0.88441 0.92658 0.92158 0.76776 0.91463 0.89352 0.91883 0.92110 0.88136 0.88208 0.84366 0.82014 0.82028 0.91068 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.61 10.67 55.43 0.59 -22.02 16 2 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 3 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -13.91 8.21 -34.44 -0.28 -14.19 16 8 H 0.06 1.66 7.57 -52.49 -0.40 1.26 16 9 C 0.25 5.86 0.85 -89.94 -0.08 5.79 16 10 O -0.59 -14.46 13.08 -35.23 -0.46 -14.92 16 11 C -0.13 -2.81 5.47 -24.58 -0.13 -2.95 16 12 C 0.09 1.61 6.68 -2.53 -0.02 1.60 16 13 N -0.61 -11.80 3.33 -170.52 -0.57 -12.37 16 14 C 0.52 9.60 7.84 -10.99 -0.09 9.51 16 15 O -0.55 -12.00 16.36 5.55 0.09 -11.91 16 16 C -0.08 -1.05 4.96 -29.04 -0.14 -1.19 16 17 C -0.08 -1.06 4.29 -106.25 -0.46 -1.52 16 18 C -0.12 -1.49 9.98 -41.21 -0.41 -1.90 16 19 C -0.21 -2.42 11.23 29.04 0.33 -2.10 16 20 S 0.08 0.93 23.34 -107.50 -2.51 -1.58 16 21 C -0.20 -2.52 10.98 29.04 0.32 -2.21 16 22 C 0.12 2.78 6.22 -3.07 -0.02 2.76 16 23 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 24 H 0.38 9.39 7.46 45.56 0.34 9.73 16 25 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 26 H 0.09 1.91 7.54 -51.93 -0.39 1.52 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 0.85 7.48 -51.93 -0.39 0.46 16 29 H 0.10 1.14 8.13 -51.93 -0.42 0.72 16 30 H 0.10 1.13 7.82 -51.93 -0.41 0.73 16 31 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.16 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 34 H 0.07 1.64 7.66 -51.93 -0.40 1.24 16 35 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 LS Contribution 310.03 15.07 4.67 4.67 Total: -1.00 -29.02 310.03 -8.01 -37.02 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -3.73 Total: 10.68 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -1.08 Total: -4.64 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.02 Total: -34.39 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.37 Total: -26.83 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.51 Total: -1.58 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.02 -8.01 -37.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843954.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.338 kcal (2) G-P(sol) polarization free energy of solvation -29.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds