Wall clock time and date at job start Tue Mar 31 2020 05:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99907 * 2 1 4 4 H 1.48501 * 109.46853 * 269.99689 * 3 2 1 5 5 H 1.48501 * 109.47007 * 29.99639 * 3 2 1 6 6 H 1.48494 * 109.46798 * 149.99773 * 3 2 1 7 7 C 1.37874 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00055 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00419 * 359.97438 * 7 2 1 10 10 O 1.42897 * 110.77984 * 298.21782 * 9 7 2 11 11 C 1.55161 * 110.71583 * 61.45461 * 9 7 2 12 12 C 1.54912 * 101.58156 * 153.86770 * 11 9 7 13 13 N 1.47424 * 104.83087 * 322.99053 * 12 11 9 14 14 C 1.34779 * 125.64778 * 204.09167 * 13 12 11 15 15 O 1.21285 * 119.99754 * 180.02562 * 14 13 12 16 16 C 1.50695 * 120.00085 * 0.02562 * 14 13 12 17 17 C 1.50701 * 109.46980 * 180.02562 * 16 14 13 18 18 C 1.33388 * 125.20552 * 90.00429 * 17 16 14 19 19 C 1.38421 * 114.92066 * 180.24956 * 18 17 16 20 20 C 1.33395 * 114.92147 * 359.48238 * 19 18 17 21 21 S 1.75885 * 125.19989 * 269.96956 * 17 16 14 22 22 C 1.47021 * 108.70382 * 24.35478 * 13 12 11 23 23 H 0.96991 * 119.99921 * 0.02562 * 1 2 3 24 24 H 0.96705 * 114.00324 * 61.78545 * 10 9 7 25 25 H 1.08999 * 111.00487 * 35.79212 * 11 9 7 26 26 H 1.09005 * 111.00478 * 271.93836 * 11 9 7 27 27 H 1.08997 * 110.36657 * 204.15194 * 12 11 9 28 28 H 1.08997 * 110.46070 * 81.87257 * 12 11 9 29 29 H 1.08999 * 109.47016 * 59.99749 * 16 14 13 30 30 H 1.09008 * 109.46910 * 299.99778 * 16 14 13 31 31 H 1.08002 * 122.53671 * 359.96983 * 18 17 16 32 32 H 1.08001 * 122.54223 * 179.72513 * 19 18 17 33 33 H 1.07998 * 125.20353 * 180.21324 * 20 19 18 34 34 H 1.09004 * 109.88659 * 118.12850 * 22 13 12 35 35 H 1.08996 * 109.88573 * 239.29518 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 8 0.4510 -2.6216 1.1793 11 6 0.3756 -2.6287 -1.2727 12 6 0.2710 -4.1669 -1.4233 13 7 1.5924 -4.6768 -1.0141 14 6 2.1323 -5.8524 -1.3925 15 8 3.2317 -6.1715 -0.9922 16 6 1.3698 -6.7702 -2.3130 17 6 2.1877 -8.0077 -2.5788 18 6 2.1493 -9.1256 -1.8521 19 6 2.9958 -10.1318 -2.2847 20 6 3.7136 -9.8350 -3.3691 21 16 3.3382 -8.1992 -3.8953 22 6 2.2210 -3.6935 -0.1200 23 1 -0.4849 0.8400 -0.0004 24 1 -0.2288 -1.9394 1.2657 25 1 0.8728 -2.1846 -2.1351 26 1 -0.6074 -2.1835 -1.1184 27 1 0.0659 -4.4335 -2.4600 28 1 -0.5069 -4.5617 -0.7697 29 1 1.1700 -6.2572 -3.2537 30 1 0.4264 -7.0521 -1.8452 31 1 1.5097 -9.2356 -0.9888 32 1 3.0666 -11.0864 -1.7845 33 1 4.4206 -10.4962 -3.8479 34 1 2.3889 -4.1384 0.8609 35 1 3.1674 -3.3584 -0.5442 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592844165.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:43 Heat of formation + Delta-G solvation = -50.765559 kcal Electronic energy + Delta-G solvation = -19593.684384 eV Core-core repulsion = 16490.328407 eV Total energy + Delta-G solvation = -3103.355977 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.61093 -37.90157 -37.04738 -34.33453 -32.25003 -32.17482 -29.72753 -28.46640 -27.04978 -25.00907 -23.28262 -22.23830 -19.91314 -19.27716 -18.79819 -17.30077 -17.02161 -16.61443 -15.58537 -15.39116 -14.96795 -14.71953 -14.26557 -13.89342 -13.20207 -12.99522 -12.78394 -12.68973 -12.33051 -12.14197 -12.04281 -11.68066 -11.42671 -11.38094 -11.37246 -10.90889 -10.72593 -10.65825 -10.50833 -10.14584 -9.53918 -9.37283 -8.71660 -8.60362 -8.41494 -8.26139 -8.04205 -6.31504 -4.38955 1.00737 1.66298 2.02911 2.75504 3.02186 3.18418 3.26093 3.30619 3.56755 4.25100 4.66970 4.92226 4.99764 5.03742 5.15626 5.41614 5.49035 5.58131 5.60881 5.71904 5.87723 5.97493 6.11906 6.18059 6.29852 6.42578 6.49678 6.66635 6.87038 6.93397 7.26112 7.31597 7.70433 7.99370 8.06996 8.58654 8.64372 9.27161 9.36088 10.76057 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.038504 B = 0.003722 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.027737 B = 7520.512658 C = 7730.740140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.247 3.753 10 O -0.585 6.585 11 C -0.134 4.134 12 C 0.093 3.907 13 N -0.609 5.609 14 C 0.522 3.478 15 O -0.543 6.543 16 C -0.068 4.068 17 C -0.147 4.147 18 C -0.134 4.134 19 C -0.131 4.131 20 C -0.221 4.221 21 S 0.105 5.895 22 C 0.123 3.877 23 H 0.268 0.732 24 H 0.382 0.618 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.161 0.839 34 H 0.060 0.940 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.678 -13.797 -7.426 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.082 0.918 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.173 4.173 12 C -0.030 4.030 13 N -0.342 5.342 14 C 0.309 3.691 15 O -0.421 6.421 16 C -0.110 4.110 17 C -0.265 4.265 18 C -0.164 4.164 19 C -0.162 4.162 20 C -0.356 4.356 21 S 0.369 5.631 22 C 0.002 3.998 23 H 0.078 0.922 24 H 0.232 0.768 25 H 0.086 0.914 26 H 0.107 0.893 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.179 0.821 34 H 0.079 0.921 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.686 -13.518 -8.321 15.889 hybrid contribution -0.458 0.531 1.019 1.237 sum 0.229 -12.987 -7.302 14.901 Atomic orbital electron populations 1.69695 1.05939 1.27656 1.50241 1.24981 0.95037 0.99518 0.93442 0.86413 0.79934 0.82380 0.78258 1.20466 1.21000 1.19669 1.21511 0.93712 0.90196 1.51905 0.91765 1.19474 0.86960 0.90670 0.82227 1.86143 1.51704 1.56544 1.45016 1.23300 1.02917 0.90091 1.00990 1.22549 0.84319 0.97773 0.98358 1.48649 1.19502 1.18143 1.47886 1.19958 0.86407 0.80863 0.81918 1.90693 1.20545 1.73991 1.56894 1.20156 0.98287 0.91732 1.00805 1.23855 1.03050 0.98694 1.00877 1.20056 1.02159 0.92971 1.01227 1.20099 0.98009 1.00705 0.97371 1.25552 1.07321 0.99529 1.03226 1.84197 1.38690 1.10760 1.29470 1.22069 0.96744 0.88436 0.92569 0.92214 0.76809 0.91414 0.89297 0.92126 0.91813 0.88045 0.87229 0.84490 0.84488 0.82128 0.92118 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.57 10.69 55.43 0.59 -21.98 16 2 C 0.07 1.85 5.28 -17.82 -0.09 1.75 16 3 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.53 -13.86 8.22 -34.44 -0.28 -14.14 16 8 H 0.06 1.68 7.58 -52.49 -0.40 1.28 16 9 C 0.25 5.85 0.84 -89.93 -0.08 5.77 16 10 O -0.59 -14.40 13.06 -35.23 -0.46 -14.86 16 11 C -0.13 -2.80 5.47 -24.58 -0.13 -2.94 16 12 C 0.09 1.60 6.68 -2.53 -0.02 1.58 16 13 N -0.61 -11.78 3.33 -170.52 -0.57 -12.35 16 14 C 0.52 9.62 7.84 -10.99 -0.09 9.54 16 15 O -0.54 -11.92 16.36 5.55 0.09 -11.82 16 16 C -0.07 -0.93 5.20 -29.04 -0.15 -1.08 16 17 C -0.15 -2.04 5.00 -36.00 -0.18 -2.22 16 18 C -0.13 -1.73 10.05 -41.21 -0.41 -2.15 16 19 C -0.13 -1.50 10.18 -41.21 -0.42 -1.92 16 20 C -0.22 -2.47 11.23 29.04 0.33 -2.15 16 21 S 0.11 1.34 23.33 -107.50 -2.51 -1.17 16 22 C 0.12 2.77 6.22 -3.06 -0.02 2.75 16 23 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 24 H 0.38 9.35 7.49 45.56 0.34 9.69 16 25 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 26 H 0.09 1.92 7.54 -51.93 -0.39 1.53 16 27 H 0.06 0.85 7.48 -51.93 -0.39 0.46 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.10 1.19 7.85 -51.93 -0.41 0.78 16 30 H 0.11 1.24 8.14 -51.92 -0.42 0.82 16 31 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 32 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 35 H 0.07 1.65 7.66 -51.93 -0.40 1.25 16 LS Contribution 310.30 15.07 4.68 4.68 Total: -1.00 -28.96 310.30 -8.47 -37.43 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -3.73 Total: 10.21 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -1.55 Total: -5.20 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.03 Total: -34.33 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.37 Total: -26.68 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.51 Total: -1.17 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.96 -8.47 -37.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844165.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.331 kcal (2) G-P(sol) polarization free energy of solvation -28.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds