Wall clock time and date at job start Tue Mar 31 2020 05:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99907 * 2 1 4 4 H 1.48501 * 109.46853 * 269.99689 * 3 2 1 5 5 H 1.48501 * 109.47007 * 29.99639 * 3 2 1 6 6 H 1.48494 * 109.46798 * 149.99773 * 3 2 1 7 7 C 1.37874 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00055 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00419 * 359.97438 * 7 2 1 10 10 O 1.42897 * 110.77984 * 298.21782 * 9 7 2 11 11 C 1.55161 * 110.71583 * 61.45461 * 9 7 2 12 12 C 1.54912 * 101.58156 * 153.86770 * 11 9 7 13 13 N 1.47424 * 104.83087 * 322.99053 * 12 11 9 14 14 C 1.34779 * 125.64778 * 204.09167 * 13 12 11 15 15 O 1.21285 * 119.99754 * 180.02562 * 14 13 12 16 16 C 1.50695 * 120.00085 * 0.02562 * 14 13 12 17 17 C 1.50701 * 109.46980 * 180.02562 * 16 14 13 18 18 C 1.33388 * 125.20552 * 90.00429 * 17 16 14 19 19 C 1.38421 * 114.92066 * 180.24956 * 18 17 16 20 20 C 1.33395 * 114.92147 * 359.48238 * 19 18 17 21 21 S 1.75885 * 125.19989 * 269.96956 * 17 16 14 22 22 C 1.47021 * 108.70382 * 24.35478 * 13 12 11 23 23 H 0.96991 * 119.99921 * 0.02562 * 1 2 3 24 24 H 0.96705 * 114.00324 * 61.78545 * 10 9 7 25 25 H 1.08999 * 111.00487 * 35.79212 * 11 9 7 26 26 H 1.09005 * 111.00478 * 271.93836 * 11 9 7 27 27 H 1.08997 * 110.36657 * 204.15194 * 12 11 9 28 28 H 1.08997 * 110.46070 * 81.87257 * 12 11 9 29 29 H 1.08999 * 109.47016 * 59.99749 * 16 14 13 30 30 H 1.09008 * 109.46910 * 299.99778 * 16 14 13 31 31 H 1.08002 * 122.53671 * 359.96983 * 18 17 16 32 32 H 1.08001 * 122.54223 * 179.72513 * 19 18 17 33 33 H 1.07998 * 125.20353 * 180.21324 * 20 19 18 34 34 H 1.09004 * 109.88659 * 118.12850 * 22 13 12 35 35 H 1.08996 * 109.88573 * 239.29518 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 8 0.4510 -2.6216 1.1793 11 6 0.3756 -2.6287 -1.2727 12 6 0.2710 -4.1669 -1.4233 13 7 1.5924 -4.6768 -1.0141 14 6 2.1323 -5.8524 -1.3925 15 8 3.2317 -6.1715 -0.9922 16 6 1.3698 -6.7702 -2.3130 17 6 2.1877 -8.0077 -2.5788 18 6 2.1493 -9.1256 -1.8521 19 6 2.9958 -10.1318 -2.2847 20 6 3.7136 -9.8350 -3.3691 21 16 3.3382 -8.1992 -3.8953 22 6 2.2210 -3.6935 -0.1200 23 1 -0.4849 0.8400 -0.0004 24 1 -0.2288 -1.9394 1.2657 25 1 0.8728 -2.1846 -2.1351 26 1 -0.6074 -2.1835 -1.1184 27 1 0.0659 -4.4335 -2.4600 28 1 -0.5069 -4.5617 -0.7697 29 1 1.1700 -6.2572 -3.2537 30 1 0.4264 -7.0521 -1.8452 31 1 1.5097 -9.2356 -0.9888 32 1 3.0666 -11.0864 -1.7845 33 1 4.4206 -10.4962 -3.8479 34 1 2.3889 -4.1384 0.8609 35 1 3.1674 -3.3584 -0.5442 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592844165.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:42 Heat of formation + Delta-G solvation = -69.626384 kcal Electronic energy + Delta-G solvation = -19594.502251 eV Core-core repulsion = 16490.328407 eV Total energy + Delta-G solvation = -3104.173843 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.11580 -39.23768 -38.35162 -36.08494 -34.21556 -33.29598 -31.34774 -30.09677 -28.27157 -26.70906 -24.43808 -23.64612 -21.62752 -20.49149 -20.02508 -19.16100 -18.13071 -18.06012 -16.97102 -16.83946 -16.62349 -16.04723 -16.01221 -15.36751 -14.82777 -14.32365 -13.92200 -13.80636 -13.72973 -13.48218 -13.35223 -13.24470 -13.14560 -13.09110 -12.65948 -12.49753 -12.40018 -12.28455 -11.97613 -11.65561 -11.27679 -10.98657 -10.63612 -10.14720 -9.63048 -9.57475 -9.35585 -8.25226 -6.39423 0.06701 0.74352 1.11875 1.40629 1.44136 1.52791 1.60007 1.79159 2.15049 2.39895 3.00339 3.56009 3.71655 3.91417 3.99896 4.17736 4.26407 4.30966 4.43709 4.48189 4.58826 4.65355 4.72492 4.77016 4.92494 5.17325 5.21900 5.24545 5.39253 5.47213 5.54402 5.60505 5.76219 6.08181 6.57949 6.65361 7.12713 7.30844 7.40365 8.80601 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.038504 B = 0.003722 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.027737 B = 7520.512658 C = 7730.740140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.040 3.960 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.565 4.565 8 H 0.048 0.952 9 C 0.235 3.765 10 O -0.592 6.592 11 C -0.126 4.126 12 C 0.101 3.899 13 N -0.612 5.612 14 C 0.518 3.482 15 O -0.584 6.584 16 C -0.057 4.057 17 C -0.174 4.174 18 C -0.138 4.138 19 C -0.143 4.143 20 C -0.212 4.212 21 S 0.081 5.919 22 C 0.130 3.870 23 H 0.272 0.728 24 H 0.380 0.620 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.077 0.923 29 H 0.124 0.876 30 H 0.138 0.862 31 H 0.147 0.853 32 H 0.163 0.837 33 H 0.188 0.812 34 H 0.041 0.959 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.519 -14.932 -8.522 17.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.162 4.162 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.604 4.604 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.401 6.401 11 C -0.164 4.164 12 C -0.020 4.020 13 N -0.345 5.345 14 C 0.308 3.692 15 O -0.465 6.465 16 C -0.098 4.098 17 C -0.292 4.292 18 C -0.168 4.168 19 C -0.173 4.173 20 C -0.348 4.348 21 S 0.344 5.656 22 C 0.007 3.993 23 H 0.081 0.919 24 H 0.229 0.771 25 H 0.075 0.925 26 H 0.100 0.900 27 H 0.122 0.878 28 H 0.095 0.905 29 H 0.142 0.858 30 H 0.156 0.844 31 H 0.165 0.835 32 H 0.180 0.820 33 H 0.205 0.795 34 H 0.059 0.941 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.181 -14.664 -9.434 17.437 hybrid contribution -0.146 0.841 1.400 1.639 sum -0.328 -13.823 -8.034 15.991 Atomic orbital electron populations 1.69742 1.06407 1.28400 1.49619 1.25544 0.95888 1.01766 0.92988 0.85581 0.78555 0.79284 0.78327 1.19865 1.20238 1.20421 1.21720 0.93327 0.91967 1.53349 0.93363 1.19594 0.87543 0.90249 0.83109 1.86127 1.51721 1.56372 1.45882 1.23075 1.01486 0.93041 0.98832 1.22600 0.83402 0.94743 1.01270 1.48718 1.20114 1.18158 1.47495 1.20902 0.86121 0.80575 0.81630 1.90668 1.22600 1.74770 1.58462 1.20172 0.98394 0.90659 1.00553 1.23986 1.04124 0.99176 1.01893 1.20391 1.02181 0.93117 1.01151 1.20419 0.97690 1.01554 0.97619 1.25930 1.07208 0.98699 1.02945 1.84243 1.39079 1.12476 1.29768 1.21750 0.96255 0.88977 0.92344 0.91855 0.77058 0.92514 0.90035 0.87786 0.90488 0.85779 0.84418 0.83516 0.81954 0.79462 0.94079 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.20 10.69 21.45 0.23 -44.97 16 2 C 0.04 2.03 5.28 84.65 0.45 2.47 16 3 Si 0.96 41.15 29.54 68.60 2.03 43.18 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.57 -29.95 8.22 25.60 0.21 -29.74 16 8 H 0.05 2.63 7.58 -2.91 -0.02 2.60 16 9 C 0.23 11.29 0.84 -10.35 -0.01 11.29 16 10 O -0.59 -29.50 13.06 -148.98 -1.95 -31.44 16 11 C -0.13 -5.16 5.47 31.99 0.17 -4.99 16 12 C 0.10 3.26 6.68 86.86 0.58 3.84 16 13 N -0.61 -23.17 3.33 -811.78 -2.70 -25.87 16 14 C 0.52 18.55 7.84 87.66 0.69 19.23 16 15 O -0.58 -25.73 16.36 -3.05 -0.05 -25.78 16 16 C -0.06 -1.39 5.20 29.10 0.15 -1.24 16 17 C -0.17 -4.50 5.00 24.59 0.12 -4.37 16 18 C -0.14 -3.27 10.05 21.22 0.21 -3.06 16 19 C -0.14 -2.92 10.18 21.22 0.22 -2.71 16 20 C -0.21 -4.26 11.23 66.72 0.75 -3.51 16 21 S 0.08 1.95 23.33 -56.49 -1.32 0.63 16 22 C 0.13 5.98 6.22 86.73 0.54 6.52 16 23 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16 24 H 0.38 18.79 7.49 -74.05 -0.55 18.24 16 25 H 0.06 2.42 8.04 -2.39 -0.02 2.40 16 26 H 0.08 3.46 7.54 -2.38 -0.02 3.44 16 27 H 0.10 2.49 7.48 -2.39 -0.02 2.47 16 28 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.12 2.49 7.85 -2.39 -0.02 2.47 16 30 H 0.14 2.60 8.14 -2.38 -0.02 2.58 16 31 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 32 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 33 H 0.19 2.60 8.06 -2.91 -0.02 2.57 16 34 H 0.04 2.00 8.07 -2.39 -0.02 1.98 16 35 H 0.05 2.66 7.66 -2.39 -0.02 2.64 16 Total: -1.00 -63.22 310.30 0.88 -62.34 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 0.55 Total: 28.19 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 4.08 Total: -6.27 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: -2.47 Total: -70.84 kcal Atomic # 8 Polarization: -55.23 SS G_CDS: -2.00 Total: -57.22 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.32 Total: 0.63 kcal Total: -63.22 0.88 -62.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844165.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.289 kcal (2) G-P(sol) polarization free energy of solvation -63.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds