Wall clock time and date at job start Tue Mar 31 2020 06:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76197 * 102.99993 * 2 1 4 4 C 1.39173 * 119.93306 * 0.02562 * 3 2 1 5 5 C 1.37983 * 120.31697 * 180.02562 * 4 3 2 6 6 C 1.38696 * 120.17199 * 359.97438 * 5 4 3 7 7 O 1.35750 * 120.06865 * 179.97438 * 6 5 4 8 8 C 1.40089 * 119.86242 * 359.97438 * 6 5 4 9 9 C 1.47542 * 120.15554 * 180.02562 * 8 6 5 10 10 O 1.21583 * 120.00062 * 0.02562 * 9 8 6 11 11 N 1.34781 * 120.00183 * 180.02562 * 9 8 6 12 12 C 1.46500 * 120.00238 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47086 * 34.99710 * 12 11 9 14 14 C 1.52995 * 109.46835 * 274.99456 * 12 11 9 15 15 C 1.50698 * 109.46975 * 154.99023 * 12 11 9 16 16 H 1.08003 * 120.00248 * 35.01088 * 15 12 11 17 17 C 1.37879 * 120.00061 * 215.00078 * 15 12 11 18 18 N 1.31514 * 120.00065 * 184.92370 * 17 15 12 19 19 Si 1.86799 * 120.00086 * 4.91820 * 17 15 12 20 20 H 1.48496 * 109.46932 * 84.83083 * 19 17 15 21 21 H 1.48491 * 109.47212 * 204.83377 * 19 17 15 22 22 H 1.48507 * 109.46996 * 324.83552 * 19 17 15 23 23 C 1.38468 * 119.93063 * 180.27921 * 3 2 1 24 24 H 1.09002 * 109.46861 * 299.99534 * 1 2 3 25 25 H 1.08999 * 109.47249 * 59.99722 * 1 2 3 26 26 H 1.09001 * 109.46985 * 180.02562 * 1 2 3 27 27 H 1.08002 * 119.84438 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.91867 * 179.97438 * 5 4 3 29 29 H 0.96706 * 113.99678 * 270.02094 * 7 6 5 30 30 H 0.97001 * 119.99924 * 359.97438 * 11 9 8 31 31 H 1.09002 * 109.47365 * 295.03446 * 14 12 11 32 32 H 1.09001 * 109.46944 * 175.03330 * 14 12 11 33 33 H 1.08998 * 109.47309 * 55.04126 * 14 12 11 34 34 H 0.96997 * 119.99915 * 179.97438 * 18 17 15 35 35 H 1.07995 * 120.09170 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1914 2.6648 0.0005 5 6 1.4928 4.0113 0.0000 6 6 2.8152 4.4296 -0.0005 7 8 3.1093 5.7549 -0.0016 8 6 3.8467 3.4818 0.0000 9 6 5.2556 3.9196 0.0000 10 8 5.5237 5.1055 0.0000 11 7 6.2456 3.0049 0.0000 12 6 7.6446 3.4397 -0.0006 13 1 7.7419 4.3516 0.5885 14 6 8.0938 3.7105 -1.4378 15 6 8.5065 2.3593 0.6002 16 1 8.2616 1.3201 0.4375 17 6 9.6080 2.6976 1.3574 18 7 10.4149 1.7583 1.8006 19 14 9.9544 4.4899 1.7537 20 1 9.1787 4.8900 2.9550 21 1 11.4047 4.6668 2.0192 22 1 9.5551 5.3376 0.6016 23 6 3.5350 2.1201 -0.0058 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.1598 2.3450 0.0005 28 1 0.6970 4.7414 0.0000 29 1 3.1940 6.1383 -0.8853 30 1 6.0317 2.0588 0.0004 31 1 8.0804 2.7793 -2.0042 32 1 9.1049 4.1176 -1.4318 33 1 7.4163 4.4275 -1.9013 34 1 11.1900 1.9963 2.3330 35 1 4.3251 1.3838 -0.0108 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596995626.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:38 Heat of formation + Delta-G solvation = -55.486452 kcal Electronic energy + Delta-G solvation = -19416.305606 eV Core-core repulsion = 16312.744916 eV Total energy + Delta-G solvation = -3103.560690 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.18513 -38.20085 -36.67297 -34.81258 -32.54088 -31.66085 -30.16075 -29.59598 -28.84616 -25.31903 -23.95808 -22.80672 -21.12532 -19.63581 -18.60839 -18.08631 -16.91381 -16.25701 -15.73497 -15.68231 -14.97787 -14.77616 -14.45742 -14.08831 -13.96520 -13.89834 -13.13757 -13.00986 -12.63568 -12.52694 -12.43217 -12.30557 -12.11025 -11.46574 -11.09268 -10.80686 -10.74196 -10.56158 -10.42569 -9.86742 -9.62133 -9.21383 -9.17255 -9.15006 -8.69021 -8.08380 -7.51195 -6.22452 -4.26426 0.73700 1.02919 1.28774 2.17238 3.01881 3.28439 3.35999 3.43350 3.85119 3.93422 4.22393 4.34074 4.63148 4.69790 4.73100 4.74147 5.09942 5.18641 5.33046 5.33688 5.45163 5.67625 5.85473 5.98134 6.20925 6.35326 6.47364 6.52021 6.67700 6.93490 7.18984 7.37617 7.54050 7.74480 8.13285 8.55328 8.77645 8.94425 9.39372 10.89192 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.020422 B = 0.004772 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.728139 B = 5866.348233 C = 6837.535316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.109 6.109 3 C -0.106 4.106 4 C -0.101 4.101 5 C -0.139 4.139 6 C 0.159 3.841 7 O -0.475 6.475 8 C -0.133 4.133 9 C 0.542 3.458 10 O -0.538 6.538 11 N -0.698 5.698 12 C 0.231 3.769 13 H 0.051 0.949 14 C -0.147 4.147 15 C -0.531 4.531 16 H 0.079 0.921 17 C 0.082 3.918 18 N -0.888 5.888 19 Si 0.874 3.126 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.260 1.260 23 C -0.051 4.051 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.108 0.892 27 H 0.129 0.871 28 H 0.136 0.864 29 H 0.393 0.607 30 H 0.392 0.608 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.029 0.971 34 H 0.268 0.732 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.975 -0.783 -5.705 21.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.133 5.867 3 C -0.218 4.218 4 C -0.125 4.125 5 C -0.159 4.159 6 C 0.110 3.890 7 O -0.285 6.285 8 C -0.139 4.139 9 C 0.327 3.673 10 O -0.417 6.417 11 N -0.347 5.347 12 C 0.129 3.871 13 H 0.069 0.931 14 C -0.206 4.206 15 C -0.569 4.569 16 H 0.097 0.903 17 C -0.122 4.122 18 N -0.524 5.524 19 Si 0.701 3.299 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.184 1.184 23 C -0.075 4.075 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.126 0.874 27 H 0.147 0.853 28 H 0.154 0.846 29 H 0.251 0.749 30 H 0.226 0.774 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -19.917 -1.108 -4.990 20.562 hybrid contribution -0.669 1.500 -0.139 1.648 sum -20.585 0.392 -5.129 21.218 Atomic orbital electron populations 1.23689 0.95192 1.07132 1.05574 1.85692 1.05857 1.02362 1.92812 1.21561 0.96264 0.96968 1.06994 1.21107 0.98282 0.92461 1.00632 1.21279 0.95848 0.95848 1.02912 1.18487 0.90454 0.83969 0.96055 1.84784 1.92449 1.18036 1.33247 1.20706 0.95025 0.93119 1.05052 1.18045 0.84402 0.86630 0.78226 1.90750 1.84032 1.16327 1.50588 1.46644 1.07473 1.08863 1.71680 1.19161 0.77110 0.97026 0.93808 0.93072 1.22213 1.00047 0.99625 0.98684 1.21002 1.09780 0.93581 1.32558 0.90286 1.24933 0.95470 0.97513 0.94328 1.69880 1.14443 1.32919 1.35181 0.86896 0.77384 0.85590 0.80070 1.19797 1.21164 1.18447 1.20946 0.94872 0.94785 0.96879 0.89732 0.89774 0.87362 0.85315 0.84617 0.74916 0.77395 0.93369 0.92815 0.95237 0.92218 0.84290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.14 101.05 0.92 0.00 16 2 S -0.11 -1.14 22.55 -107.50 -2.42 -3.56 16 3 C -0.11 -1.28 6.10 -39.15 -0.24 -1.52 16 4 C -0.10 -1.06 9.35 -39.33 -0.37 -1.43 16 5 C -0.14 -1.57 9.97 -39.51 -0.39 -1.96 16 6 C 0.16 2.33 6.72 -38.72 -0.26 2.07 16 7 O -0.47 -7.13 11.56 -40.89 -0.47 -7.60 16 8 C -0.13 -2.19 5.88 -104.87 -0.62 -2.81 16 9 C 0.54 11.05 7.73 -12.46 -0.10 10.95 16 10 O -0.54 -12.55 14.81 -16.64 -0.25 -12.79 16 11 N -0.70 -14.61 5.02 -55.98 -0.28 -14.89 16 12 C 0.23 5.60 2.22 -69.09 -0.15 5.45 16 13 H 0.05 1.35 4.73 -51.93 -0.25 1.11 16 14 C -0.15 -3.24 9.47 37.15 0.35 -2.89 16 15 C -0.53 -14.43 9.05 -34.44 -0.31 -14.74 16 16 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 17 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 18 N -0.89 -26.31 13.96 55.43 0.77 -25.53 16 19 Si 0.87 21.85 26.99 -169.99 -4.59 17.27 16 20 H -0.27 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.26 -6.39 6.82 56.52 0.39 -6.01 16 23 C -0.05 -0.72 9.27 -38.95 -0.36 -1.08 16 24 H 0.08 0.48 7.74 -51.92 -0.40 0.08 16 25 H 0.08 0.45 7.74 -51.92 -0.40 0.05 16 26 H 0.11 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.13 0.97 5.84 -52.49 -0.31 0.66 16 28 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 29 H 0.39 4.29 9.06 45.56 0.41 4.70 16 30 H 0.39 7.30 6.62 -40.82 -0.27 7.03 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.14 1.91 6.40 -52.49 -0.34 1.57 16 LS Contribution 311.42 15.07 4.69 4.69 Total: -1.00 -33.27 311.42 -7.40 -40.68 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -3.24 Total: 7.50 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -1.62 Total: -5.76 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.49 Total: -40.42 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.72 Total: -20.40 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.59 Total: 17.27 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -2.42 Total: -3.56 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.27 -7.40 -40.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596995626.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.809 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds