Wall clock time and date at job start Tue Mar 31 2020 06:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76206 * 102.99839 * 2 1 4 4 C 1.39174 * 119.92887 * 0.02562 * 3 2 1 5 5 C 1.37990 * 120.30764 * 179.97438 * 4 3 2 6 6 C 1.38684 * 120.17664 * 359.97438 * 5 4 3 7 7 O 1.35758 * 120.07009 * 179.97438 * 6 5 4 8 8 C 1.40091 * 119.86329 * 0.02562 * 6 5 4 9 9 C 1.47544 * 120.15583 * 180.02562 * 8 6 5 10 10 O 1.21592 * 120.00024 * 359.97438 * 9 8 6 11 11 N 1.34784 * 120.00398 * 179.97438 * 9 8 6 12 12 C 1.46497 * 120.00075 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.47049 * 324.99133 * 12 11 9 14 14 C 1.52997 * 109.47188 * 85.00024 * 12 11 9 15 15 C 1.50706 * 109.46582 * 204.99875 * 12 11 9 16 16 H 1.07999 * 120.00196 * 359.97438 * 15 12 11 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47363 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47233 * 120.00158 * 19 17 15 22 22 H 1.48508 * 109.46883 * 239.99963 * 19 17 15 23 23 C 1.38471 * 119.93224 * 180.27848 * 3 2 1 24 24 H 1.08999 * 109.47561 * 299.99702 * 1 2 3 25 25 H 1.08993 * 109.47141 * 60.00062 * 1 2 3 26 26 H 1.09009 * 109.46945 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.84468 * 359.97438 * 4 3 2 28 28 H 1.08005 * 119.90981 * 179.97438 * 5 4 3 29 29 H 0.96703 * 113.99813 * 270.02865 * 7 6 5 30 30 H 0.96996 * 119.99132 * 359.97438 * 11 9 8 31 31 H 1.09002 * 109.47153 * 299.99573 * 14 12 11 32 32 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 33 33 H 1.09004 * 109.47261 * 59.99745 * 14 12 11 34 34 H 0.96996 * 119.99730 * 179.97438 * 18 17 15 35 35 H 1.08000 * 120.08779 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1913 2.6648 0.0005 5 6 1.4927 4.0113 0.0011 6 6 2.8150 4.4297 0.0016 7 8 3.1091 5.7550 0.0016 8 6 3.8465 3.4818 0.0011 9 6 5.2555 3.9197 0.0022 10 8 5.5235 5.1057 0.0032 11 7 6.2455 3.0051 0.0022 12 6 7.6445 3.4400 0.0039 13 1 7.7421 4.3521 -0.5846 14 6 8.0929 3.7100 1.4416 15 6 8.5069 2.3599 -0.5968 16 1 8.0578 1.4413 -0.9447 17 6 9.8692 2.5445 -0.7024 18 7 10.4160 3.6629 -0.2784 19 14 10.9380 1.2061 -1.4477 20 1 10.0866 0.0555 -1.8433 21 1 11.6371 1.7397 -2.6442 22 1 11.9403 0.7586 -0.4473 23 6 3.5350 2.1202 -0.0058 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 0.1598 2.3449 0.0005 28 1 0.6968 4.7414 0.0011 29 1 3.1943 6.1390 -0.8818 30 1 6.0316 2.0590 0.0018 31 1 7.4691 4.4912 1.8761 32 1 9.1339 4.0331 1.4428 33 1 7.9952 2.7977 2.0301 34 1 11.3744 3.7926 -0.3523 35 1 4.3251 1.3840 -0.0100 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596995627.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:40 Heat of formation + Delta-G solvation = -55.367343 kcal Electronic energy + Delta-G solvation = -19339.280061 eV Core-core repulsion = 16235.724537 eV Total energy + Delta-G solvation = -3103.555525 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.11616 -38.07062 -36.62236 -34.71814 -32.57890 -31.45982 -30.12923 -29.25647 -28.45099 -25.24669 -23.89804 -22.76816 -21.20276 -19.53272 -18.55795 -17.99859 -16.60709 -16.21012 -15.66918 -15.37912 -14.99531 -14.72320 -14.40218 -14.08838 -13.98521 -13.85366 -13.08360 -13.01197 -12.58746 -12.42316 -12.30785 -12.06921 -11.67409 -11.08113 -10.95457 -10.73728 -10.68053 -10.41598 -10.28331 -10.22498 -9.59259 -9.12699 -9.05918 -9.00507 -8.54398 -7.90085 -7.49902 -6.11387 -4.20662 0.78199 1.06067 1.29541 2.17849 3.07739 3.24925 3.32670 3.35664 3.97418 4.00834 4.27479 4.38300 4.66428 4.73332 4.73469 4.74589 5.18954 5.20992 5.33666 5.36875 5.49350 5.71479 5.89138 6.01156 6.27400 6.50386 6.85308 6.99701 7.16855 7.45076 7.57010 7.70362 7.80214 7.92669 8.15796 8.64863 8.78608 9.09942 9.46810 10.94672 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.018744 B = 0.004583 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.447397 B = 6108.488813 C = 7352.531508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.112 6.112 3 C -0.106 4.106 4 C -0.102 4.102 5 C -0.139 4.139 6 C 0.160 3.840 7 O -0.475 6.475 8 C -0.132 4.132 9 C 0.541 3.459 10 O -0.533 6.533 11 N -0.702 5.702 12 C 0.265 3.735 13 H 0.050 0.950 14 C -0.147 4.147 15 C -0.533 4.533 16 H 0.062 0.938 17 C 0.066 3.934 18 N -0.883 5.883 19 Si 0.902 3.098 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.052 4.052 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.107 0.893 27 H 0.129 0.871 28 H 0.136 0.864 29 H 0.394 0.606 30 H 0.387 0.613 31 H 0.016 0.984 32 H 0.091 0.909 33 H 0.026 0.974 34 H 0.264 0.736 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.282 -5.182 -0.482 20.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 S 0.130 5.870 3 C -0.218 4.218 4 C -0.126 4.126 5 C -0.159 4.159 6 C 0.111 3.889 7 O -0.285 6.285 8 C -0.138 4.138 9 C 0.326 3.674 10 O -0.412 6.412 11 N -0.351 5.351 12 C 0.163 3.837 13 H 0.068 0.932 14 C -0.206 4.206 15 C -0.572 4.572 16 H 0.080 0.920 17 C -0.137 4.137 18 N -0.520 5.520 19 Si 0.729 3.271 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.076 4.076 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.126 0.874 27 H 0.146 0.854 28 H 0.154 0.846 29 H 0.252 0.748 30 H 0.220 0.780 31 H 0.035 0.965 32 H 0.109 0.891 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.217 -5.356 0.135 19.950 hybrid contribution -0.328 -0.027 -0.823 0.887 sum -19.545 -5.383 -0.688 20.284 Atomic orbital electron populations 1.23681 0.95151 1.07090 1.05590 1.85643 1.05919 1.02566 1.92918 1.21543 0.96280 0.96839 1.07159 1.21095 0.98232 0.92472 1.00783 1.21281 0.95873 0.95827 1.02916 1.18493 0.90431 0.84044 0.95955 1.84774 1.92435 1.17974 1.33366 1.20768 0.95263 0.93058 1.04664 1.17953 0.84231 0.86675 0.78542 1.90766 1.83922 1.16242 1.50236 1.46521 1.08302 1.08477 1.71781 1.18785 0.74102 0.96688 0.94109 0.93192 1.22082 1.03431 0.97816 0.97286 1.21251 0.92169 1.02428 1.41344 0.92006 1.24884 0.97787 0.95843 0.95154 1.69915 1.11712 1.24542 1.45875 0.86392 0.80278 0.81568 0.78862 1.19700 1.20866 1.20858 1.20928 0.94782 0.94811 0.97087 0.89751 0.89754 0.87403 0.85363 0.84629 0.74789 0.77961 0.96535 0.89059 0.95441 0.92620 0.84430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.14 101.05 0.92 0.00 16 2 S -0.11 -1.17 22.56 -107.50 -2.42 -3.59 16 3 C -0.11 -1.30 6.10 -39.15 -0.24 -1.54 16 4 C -0.10 -1.09 9.35 -39.32 -0.37 -1.46 16 5 C -0.14 -1.61 9.97 -39.51 -0.39 -2.01 16 6 C 0.16 2.40 6.72 -38.72 -0.26 2.14 16 7 O -0.47 -7.39 11.56 -40.91 -0.47 -7.86 16 8 C -0.13 -2.23 5.88 -104.87 -0.62 -2.84 16 9 C 0.54 11.47 7.73 -12.46 -0.10 11.38 16 10 O -0.53 -13.05 14.81 -16.65 -0.25 -13.30 16 11 N -0.70 -15.25 5.02 -55.97 -0.28 -15.53 16 12 C 0.26 6.87 2.56 -69.08 -0.18 6.69 16 13 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 14 C -0.15 -3.77 9.26 37.16 0.34 -3.43 16 15 C -0.53 -14.28 8.73 -34.44 -0.30 -14.58 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 17 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 18 N -0.88 -25.02 11.32 55.43 0.63 -24.40 16 19 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.05 -0.75 9.27 -38.96 -0.36 -1.11 16 24 H 0.08 0.47 7.74 -51.92 -0.40 0.07 16 25 H 0.08 0.46 7.74 -51.93 -0.40 0.06 16 26 H 0.11 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.13 0.99 5.84 -52.49 -0.31 0.68 16 28 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 29 H 0.39 4.59 9.06 45.56 0.41 5.01 16 30 H 0.39 7.36 6.57 -40.82 -0.27 7.09 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.14 1.91 6.40 -52.49 -0.34 1.57 16 LS Contribution 311.67 15.07 4.70 4.70 Total: -1.00 -32.45 311.67 -8.00 -40.45 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -3.24 Total: 8.87 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -1.64 Total: -5.06 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.35 Total: -39.93 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.72 Total: -21.16 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: -1.17 SS G_CDS: -2.42 Total: -3.59 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.45 -8.00 -40.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596995627.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.920 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds