Wall clock time and date at job start Tue Mar 31 2020 05:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00414 * 2 1 4 4 C 1.50700 * 119.99524 * 179.97438 * 2 1 3 5 5 N 1.46498 * 109.47156 * 94.99981 * 4 2 1 6 6 S 1.65602 * 119.99720 * 162.39813 * 5 4 2 7 7 O 1.42095 * 106.40435 * 310.76505 * 6 5 4 8 8 O 1.42104 * 106.39970 * 177.84479 * 6 5 4 9 9 C 1.76202 * 107.21873 * 64.30811 * 6 5 4 10 10 C 1.37639 * 120.12902 * 112.88214 * 9 6 5 11 11 C 1.38614 * 120.24962 * 180.32163 * 10 9 6 12 12 C 1.38660 * 120.49616 * 359.66501 * 11 10 9 13 13 C 1.37589 * 120.25196 * 0.02562 * 12 11 10 14 14 C 1.40689 * 120.12666 * 292.57237 * 9 6 5 15 15 C 1.41403 * 120.24681 * 359.97438 * 14 9 6 16 16 H 1.07991 * 119.99593 * 317.28519 * 15 14 9 17 17 C 1.39945 * 119.99960 * 137.27777 * 15 14 9 18 18 N 1.30825 * 119.99613 * 152.73156 * 17 15 14 19 19 Si 1.86800 * 120.00095 * 332.73454 * 17 15 14 20 20 H 1.48508 * 109.46913 * 268.46722 * 19 17 15 21 21 H 1.48496 * 109.47379 * 28.46498 * 19 17 15 22 22 H 1.48497 * 109.47202 * 148.46929 * 19 17 15 23 23 H 1.08009 * 119.99637 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.00447 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47197 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.46565 * 299.99748 * 3 2 1 27 27 H 1.08992 * 109.47268 * 59.99639 * 3 2 1 28 28 H 1.09005 * 109.47159 * 334.99738 * 4 2 1 29 29 H 1.09001 * 109.47257 * 215.00203 * 4 2 1 30 30 H 0.96993 * 120.00238 * 342.39728 * 5 4 2 31 31 H 1.08002 * 119.87624 * 0.02562 * 10 9 6 32 32 H 1.07997 * 119.75182 * 179.69311 * 11 10 9 33 33 H 1.08002 * 119.86982 * 180.02562 * 12 11 10 34 34 H 1.08001 * 120.12969 * 180.02562 * 13 12 11 35 35 H 0.97003 * 119.99586 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 7 2.4118 -1.6685 -1.3752 6 16 3.5928 -2.7938 -1.6605 7 8 4.7108 -2.4111 -0.8713 8 8 3.6569 -2.9594 -3.0704 9 6 3.0222 -4.3265 -1.0050 10 6 2.7281 -5.3726 -1.8498 11 6 2.2727 -6.5773 -1.3373 12 6 2.1147 -6.7456 0.0299 13 6 2.4086 -5.7156 0.8936 14 6 2.8716 -4.4880 0.3845 15 6 3.1774 -3.4227 1.2626 16 1 4.0647 -2.8284 1.1021 17 6 2.3301 -3.1384 2.3395 18 7 2.8095 -2.5726 3.4173 19 14 0.5147 -3.5668 2.2380 20 1 -0.2389 -2.4048 1.7021 21 1 0.3309 -4.7336 1.3380 22 1 0.0088 -3.9024 3.5932 23 1 -0.5400 0.9354 -0.0004 24 1 -0.5401 -0.9353 0.0004 25 1 3.1352 1.1058 -0.0005 26 1 1.8003 1.8765 -0.8901 27 1 1.8003 1.8766 0.8899 28 1 1.4384 -2.0853 0.4353 29 1 2.9741 -1.1988 0.5900 30 1 1.9507 -1.2501 -2.1189 31 1 2.8481 -5.2528 -2.9165 32 1 2.0397 -7.3911 -2.0079 33 1 1.7596 -7.6887 0.4183 34 1 2.2852 -5.8490 1.9583 35 1 2.2221 -2.3753 4.1636 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601395650.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:34 Heat of formation + Delta-G solvation = -38.950364 kcal Electronic energy + Delta-G solvation = -20889.252068 eV Core-core repulsion = 17786.408437 eV Total energy + Delta-G solvation = -3102.843631 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -37.93877 -36.74542 -36.16101 -34.88991 -33.89639 -32.53139 -30.69483 -30.06819 -27.07758 -25.81333 -24.81465 -21.98032 -21.18247 -18.70931 -18.35922 -17.80699 -16.95361 -16.22872 -15.78854 -15.18910 -14.52790 -14.41115 -14.14061 -13.83462 -13.46726 -13.31567 -13.06710 -12.82935 -12.27499 -12.05208 -11.88392 -11.64595 -11.47604 -11.29654 -11.19183 -11.13196 -10.98969 -10.71134 -10.45442 -10.24338 -10.10071 -9.48741 -9.34284 -8.89059 -8.65605 -8.22848 -7.69240 -7.20838 -4.82526 1.45000 2.06660 2.45686 2.49729 2.89403 2.99212 3.07790 3.76984 4.04570 4.20162 4.62640 5.02756 5.12040 5.26747 5.48680 5.74999 5.82415 5.84347 5.94804 6.06660 6.16863 6.17970 6.25099 6.29617 6.47415 6.64665 6.72311 6.87969 6.94708 7.08182 7.13927 7.23311 7.44657 7.57889 7.68163 7.82704 8.21127 8.33947 8.54523 9.76997 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.014196 B = 0.011401 C = 0.007836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.937358 B = 2455.434798 C = 3572.547808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.129 4.129 3 C -0.120 4.120 4 C 0.157 3.843 5 N -1.115 6.115 6 S 2.708 3.292 7 O -0.967 6.967 8 O -0.998 6.998 9 C -0.762 4.762 10 C 0.006 3.994 11 C -0.246 4.246 12 C -0.059 4.059 13 C -0.198 4.198 14 C 0.165 3.835 15 C -0.496 4.496 16 H 0.135 0.865 17 C 0.103 3.897 18 N -0.770 5.770 19 Si 0.853 3.147 20 H -0.253 1.253 21 H -0.225 1.225 22 H -0.274 1.274 23 H 0.095 0.905 24 H 0.098 0.902 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.406 0.594 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.839 3.137 -3.085 7.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.130 4.130 3 C -0.176 4.176 4 C 0.032 3.968 5 N -0.872 5.872 6 S 2.804 3.196 7 O -0.957 6.957 8 O -0.989 6.989 9 C -0.856 4.856 10 C -0.014 4.014 11 C -0.266 4.266 12 C -0.078 4.078 13 C -0.218 4.218 14 C 0.160 3.840 15 C -0.523 4.523 16 H 0.152 0.848 17 C -0.121 4.121 18 N -0.391 5.391 19 Si 0.675 3.325 20 H -0.178 1.178 21 H -0.147 1.147 22 H -0.200 1.200 23 H 0.114 0.886 24 H 0.116 0.884 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.121 0.879 30 H 0.238 0.762 31 H 0.132 0.868 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.883 3.381 -3.066 6.684 hybrid contribution -1.639 -0.589 0.355 1.778 sum -6.522 2.793 -2.711 7.595 Atomic orbital electron populations 1.23759 0.95464 1.01673 1.02100 1.22114 0.95460 0.96364 0.99075 1.20863 1.00902 0.94461 1.01417 1.20954 1.01131 0.92699 0.81990 1.55525 1.59588 1.58941 1.13110 1.00891 0.73191 0.73623 0.71905 1.93504 1.48805 1.82561 1.70785 1.93460 1.86922 1.87226 1.31243 1.30129 1.32852 1.19732 1.02877 1.20399 0.91084 0.92248 0.97636 1.20570 1.12940 0.98210 0.94903 1.20903 0.95743 0.97336 0.93819 1.21378 1.08459 0.93850 0.98095 1.17103 0.85315 0.92245 0.89288 1.20224 1.10878 1.14487 1.06748 0.84803 1.26072 1.01233 0.92255 0.92577 1.69791 1.38220 1.28637 1.02429 0.87118 0.82721 0.82476 0.80176 1.17817 1.14698 1.19973 0.88647 0.88376 0.91365 0.91889 0.91730 0.90808 0.87879 0.76194 0.86826 0.88110 0.88297 0.87762 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.79 13.93 29.01 0.40 -2.38 16 2 C -0.13 -2.05 5.46 -101.07 -0.55 -2.60 16 3 C -0.12 -1.63 10.05 36.00 0.36 -1.27 16 4 C 0.16 3.00 4.13 -5.19 -0.02 2.98 16 5 N -1.12 -20.42 5.98 -11.66 -0.07 -20.49 16 6 S 2.71 58.03 5.44 -107.50 -0.58 57.45 16 7 O -0.97 -23.44 15.08 -57.17 -0.86 -24.30 16 8 O -1.00 -22.03 16.97 -57.17 -0.97 -23.00 16 9 C -0.76 -17.35 5.94 -38.88 -0.23 -17.58 16 10 C 0.01 0.13 9.53 -39.66 -0.38 -0.25 16 11 C -0.25 -4.95 10.05 -39.29 -0.39 -5.34 16 12 C -0.06 -1.21 10.02 -39.66 -0.40 -1.61 16 13 C -0.20 -4.47 6.92 -38.87 -0.27 -4.74 16 14 C 0.16 3.94 4.59 -106.82 -0.49 3.45 16 15 C -0.50 -12.17 5.14 -37.74 -0.19 -12.36 16 16 H 0.13 3.59 5.38 -52.49 -0.28 3.31 16 17 C 0.10 2.38 4.23 -17.34 -0.07 2.31 16 18 N -0.77 -18.26 13.93 55.55 0.77 -17.49 16 19 Si 0.85 17.41 24.37 -169.99 -4.14 13.27 16 20 H -0.25 -4.84 6.46 56.52 0.37 -4.48 16 21 H -0.22 -4.70 5.62 56.52 0.32 -4.38 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 H 0.10 1.15 8.05 -52.48 -0.42 0.73 16 24 H 0.10 1.49 7.50 -52.49 -0.39 1.09 16 25 H 0.07 0.98 8.00 -51.93 -0.42 0.56 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.07 1.49 3.08 -51.93 -0.16 1.33 16 29 H 0.10 2.19 5.93 -51.93 -0.31 1.88 16 30 H 0.41 6.22 8.66 -34.47 -0.30 5.93 16 31 H 0.11 2.22 7.32 -52.49 -0.38 1.83 16 32 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.10 2.27 7.03 -52.49 -0.37 1.90 16 35 H 0.29 6.19 8.30 -40.82 -0.34 5.86 16 LS Contribution 292.60 15.07 4.41 4.41 Total: -1.00 -28.15 292.60 -7.66 -35.81 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -3.98 Total: 13.74 kcal Atomic # 6 Polarization: -37.16 SS G_CDS: -2.23 Total: -39.39 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.70 Total: -37.98 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -1.83 Total: -47.30 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -4.14 Total: 13.27 kcal Atomic # 16 Polarization: 58.03 SS G_CDS: -0.58 Total: 57.45 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.15 -7.66 -35.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601395650.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.138 kcal (2) G-P(sol) polarization free energy of solvation -28.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds