Wall clock time and date at job start Tue Mar 31 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00414 * 2 1 4 4 C 1.50700 * 119.99524 * 179.97438 * 2 1 3 5 5 N 1.46498 * 109.47156 * 94.99981 * 4 2 1 6 6 S 1.65602 * 119.99720 * 162.39813 * 5 4 2 7 7 O 1.42095 * 106.40435 * 310.76505 * 6 5 4 8 8 O 1.42104 * 106.39970 * 177.84479 * 6 5 4 9 9 C 1.76202 * 107.21873 * 64.30811 * 6 5 4 10 10 C 1.37639 * 120.12902 * 112.88214 * 9 6 5 11 11 C 1.38614 * 120.24962 * 180.32163 * 10 9 6 12 12 C 1.38660 * 120.49616 * 359.66501 * 11 10 9 13 13 C 1.37589 * 120.25196 * 0.02562 * 12 11 10 14 14 C 1.40689 * 120.12666 * 292.57237 * 9 6 5 15 15 C 1.41403 * 120.24681 * 359.97438 * 14 9 6 16 16 H 1.07991 * 119.99593 * 317.28519 * 15 14 9 17 17 C 1.39945 * 119.99960 * 137.27777 * 15 14 9 18 18 N 1.30825 * 119.99613 * 152.73156 * 17 15 14 19 19 Si 1.86800 * 120.00095 * 332.73454 * 17 15 14 20 20 H 1.48508 * 109.46913 * 268.46722 * 19 17 15 21 21 H 1.48496 * 109.47379 * 28.46498 * 19 17 15 22 22 H 1.48497 * 109.47202 * 148.46929 * 19 17 15 23 23 H 1.08009 * 119.99637 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.00447 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47197 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.46565 * 299.99748 * 3 2 1 27 27 H 1.08992 * 109.47268 * 59.99639 * 3 2 1 28 28 H 1.09005 * 109.47159 * 334.99738 * 4 2 1 29 29 H 1.09001 * 109.47257 * 215.00203 * 4 2 1 30 30 H 0.96993 * 120.00238 * 342.39728 * 5 4 2 31 31 H 1.08002 * 119.87624 * 0.02562 * 10 9 6 32 32 H 1.07997 * 119.75182 * 179.69311 * 11 10 9 33 33 H 1.08002 * 119.86982 * 180.02562 * 12 11 10 34 34 H 1.08001 * 120.12969 * 180.02562 * 13 12 11 35 35 H 0.97003 * 119.99586 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 7 2.4118 -1.6685 -1.3752 6 16 3.5928 -2.7938 -1.6605 7 8 4.7108 -2.4111 -0.8713 8 8 3.6569 -2.9594 -3.0704 9 6 3.0222 -4.3265 -1.0050 10 6 2.7281 -5.3726 -1.8498 11 6 2.2727 -6.5773 -1.3373 12 6 2.1147 -6.7456 0.0299 13 6 2.4086 -5.7156 0.8936 14 6 2.8716 -4.4880 0.3845 15 6 3.1774 -3.4227 1.2626 16 1 4.0647 -2.8284 1.1021 17 6 2.3301 -3.1384 2.3395 18 7 2.8095 -2.5726 3.4173 19 14 0.5147 -3.5668 2.2380 20 1 -0.2389 -2.4048 1.7021 21 1 0.3309 -4.7336 1.3380 22 1 0.0088 -3.9024 3.5932 23 1 -0.5400 0.9354 -0.0004 24 1 -0.5401 -0.9353 0.0004 25 1 3.1352 1.1058 -0.0005 26 1 1.8003 1.8765 -0.8901 27 1 1.8003 1.8766 0.8899 28 1 1.4384 -2.0853 0.4353 29 1 2.9741 -1.1988 0.5900 30 1 1.9507 -1.2501 -2.1189 31 1 2.8481 -5.2528 -2.9165 32 1 2.0397 -7.3911 -2.0079 33 1 1.7596 -7.6887 0.4183 34 1 2.2852 -5.8490 1.9583 35 1 2.2221 -2.3753 4.1636 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601395650.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:33 Heat of formation + Delta-G solvation = -58.918175 kcal Electronic energy + Delta-G solvation = -20890.117937 eV Core-core repulsion = 17786.408437 eV Total energy + Delta-G solvation = -3103.709501 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.62358 -38.29400 -37.76099 -36.70313 -35.60531 -33.93977 -32.41034 -31.74799 -28.18924 -27.46807 -26.34268 -23.65626 -22.89534 -20.29316 -19.78355 -19.55208 -18.58926 -17.87370 -17.41045 -16.83071 -16.15819 -15.97598 -15.55762 -15.33263 -15.02912 -14.94594 -14.67726 -14.03353 -13.91769 -13.64360 -13.30717 -13.23680 -13.03175 -12.99124 -12.88768 -12.71125 -12.58527 -12.33451 -11.99846 -11.79241 -11.67559 -11.20194 -11.06192 -10.22990 -10.08318 -9.88557 -9.41206 -8.95135 -6.62859 -0.22810 0.36062 0.79878 1.22694 1.27560 1.36094 1.44365 2.11889 2.42186 2.49369 2.90905 3.30442 3.72082 3.93415 4.07343 4.25210 4.36215 4.60687 4.62780 4.67491 4.79619 4.83084 4.85243 4.95881 5.04132 5.13194 5.20742 5.25645 5.40733 5.57227 5.66859 5.77489 5.87298 5.94219 6.11935 6.30803 6.38456 6.58932 6.74307 8.08738 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.014196 B = 0.011401 C = 0.007836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.937358 B = 2455.434798 C = 3572.547808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.151 4.151 3 C -0.117 4.117 4 C 0.159 3.841 5 N -1.101 6.101 6 S 2.721 3.279 7 O -1.002 7.002 8 O -1.005 7.005 9 C -0.776 4.776 10 C -0.009 4.009 11 C -0.237 4.237 12 C -0.055 4.055 13 C -0.221 4.221 14 C 0.150 3.850 15 C -0.516 4.516 16 H 0.098 0.902 17 C 0.083 3.917 18 N -0.806 5.806 19 Si 0.894 3.106 20 H -0.234 1.234 21 H -0.230 1.230 22 H -0.267 1.267 23 H 0.128 0.872 24 H 0.092 0.908 25 H 0.049 0.951 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.421 0.579 31 H 0.130 0.870 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.105 0.895 35 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.263 2.600 -4.100 9.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.174 4.174 4 C 0.034 3.966 5 N -0.861 5.861 6 S 2.817 3.183 7 O -0.992 6.992 8 O -0.996 6.996 9 C -0.870 4.870 10 C -0.029 4.029 11 C -0.257 4.257 12 C -0.074 4.074 13 C -0.241 4.241 14 C 0.145 3.855 15 C -0.544 4.544 16 H 0.115 0.885 17 C -0.138 4.138 18 N -0.429 5.429 19 Si 0.713 3.287 20 H -0.158 1.158 21 H -0.153 1.153 22 H -0.192 1.192 23 H 0.146 0.854 24 H 0.110 0.890 25 H 0.068 0.932 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.256 0.744 31 H 0.148 0.852 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.123 0.877 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.304 2.849 -4.100 8.847 hybrid contribution -0.866 -0.511 0.569 1.155 sum -8.169 2.337 -3.531 9.202 Atomic orbital electron populations 1.23968 0.94774 1.02948 0.99455 1.22079 0.96076 0.95614 1.01470 1.20869 0.99519 0.93736 1.03229 1.20778 0.99998 0.94436 0.81417 1.55170 1.59043 1.58157 1.13722 1.00324 0.73074 0.73684 0.71209 1.93467 1.51019 1.83122 1.71548 1.93435 1.87227 1.87462 1.31448 1.30334 1.32869 1.20840 1.02951 1.20750 0.91238 0.92487 0.98424 1.21062 1.10656 0.98516 0.95454 1.21341 0.94141 0.98078 0.93807 1.21521 1.09660 0.94139 0.98730 1.17256 0.85923 0.92604 0.89677 1.19973 1.10784 1.15247 1.08382 0.88469 1.26548 1.03821 0.91667 0.91758 1.69802 1.39701 1.30142 1.03259 0.86504 0.79128 0.82698 0.80349 1.15820 1.15278 1.19170 0.85388 0.88969 0.93154 0.89500 0.90402 0.91845 0.90979 0.74389 0.85202 0.84371 0.84554 0.87737 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.55 13.93 67.78 0.94 -3.60 16 2 C -0.15 -4.62 5.46 -16.49 -0.09 -4.71 16 3 C -0.12 -3.03 10.05 71.23 0.72 -2.31 16 4 C 0.16 6.15 4.13 85.63 0.35 6.50 16 5 N -1.10 -40.49 5.98 -190.79 -1.14 -41.63 16 6 S 2.72 118.65 5.44 -56.49 -0.31 118.34 16 7 O -1.00 -50.99 15.08 -128.00 -1.93 -52.92 16 8 O -1.01 -44.05 16.97 -128.00 -2.17 -46.22 16 9 C -0.78 -35.29 5.94 22.73 0.13 -35.16 16 10 C -0.01 -0.38 9.53 22.22 0.21 -0.17 16 11 C -0.24 -8.72 10.05 22.46 0.23 -8.50 16 12 C -0.06 -2.09 10.02 22.22 0.22 -1.87 16 13 C -0.22 -9.76 6.92 22.73 0.16 -9.60 16 14 C 0.15 7.21 4.59 -21.29 -0.10 7.11 16 15 C -0.52 -26.34 5.14 23.46 0.12 -26.22 16 16 H 0.10 5.61 5.38 -2.92 -0.02 5.59 16 17 C 0.08 3.95 4.23 85.26 0.36 4.31 16 18 N -0.81 -39.54 13.93 21.83 0.30 -39.23 16 19 Si 0.89 35.32 24.37 68.60 1.67 36.99 16 20 H -0.23 -8.40 6.46 99.48 0.64 -7.76 16 21 H -0.23 -9.24 5.62 99.48 0.56 -8.68 16 22 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 23 H 0.13 2.54 8.05 -2.91 -0.02 2.52 16 24 H 0.09 2.54 7.50 -2.91 -0.02 2.52 16 25 H 0.05 1.46 8.00 -2.39 -0.02 1.44 16 26 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 27 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.06 2.58 3.08 -2.38 -0.01 2.57 16 29 H 0.07 3.25 5.93 -2.39 -0.01 3.23 16 30 H 0.42 12.58 8.66 -96.75 -0.84 11.74 16 31 H 0.13 4.79 7.32 -2.91 -0.02 4.76 16 32 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 33 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 34 H 0.10 4.51 7.03 -2.91 -0.02 4.49 16 35 H 0.30 13.05 8.30 -92.71 -0.77 12.28 16 Total: -1.00 -61.71 292.60 -0.24 -61.95 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: 0.07 Total: 36.95 kcal Atomic # 6 Polarization: -77.47 SS G_CDS: 3.26 Total: -74.21 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -0.84 Total: -80.87 kcal Atomic # 8 Polarization: -95.05 SS G_CDS: -4.10 Total: -99.15 kcal Atomic # 14 Polarization: 35.32 SS G_CDS: 1.67 Total: 36.99 kcal Atomic # 16 Polarization: 118.65 SS G_CDS: -0.31 Total: 118.34 kcal Total: -61.71 -0.24 -61.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601395650.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.033 kcal (2) G-P(sol) polarization free energy of solvation -61.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds