Wall clock time and date at job start Tue Mar 31 2020 05:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38276 * 119.92083 * 2 1 4 4 C 1.38241 * 120.18188 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99171 * 179.97438 * 4 3 2 6 6 C 1.38554 * 120.01604 * 359.97438 * 4 3 2 7 7 O 1.35973 * 120.08426 * 179.72634 * 6 4 3 8 8 C 1.39295 * 119.82971 * 0.02562 * 6 4 3 9 9 N 1.40133 * 120.08292 * 179.97438 * 8 6 4 10 10 C 1.34773 * 119.99685 * 145.38883 * 9 8 6 11 11 O 1.21291 * 120.00419 * 4.44903 * 10 9 8 12 12 C 1.50704 * 119.99815 * 184.44851 * 10 9 8 13 13 S 1.81000 * 109.47259 * 179.97438 * 12 10 9 14 14 C 1.76194 * 100.00088 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99917 * 359.97438 * 14 13 12 16 16 C 1.38798 * 120.00435 * 180.02562 * 14 13 12 17 17 N 1.31637 * 119.99585 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00374 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47019 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47119 * 119.99482 * 18 16 14 21 21 H 1.48497 * 109.47201 * 239.99501 * 18 16 14 22 22 C 1.38200 * 119.91902 * 179.97438 * 2 1 3 23 23 H 1.09000 * 109.47751 * 89.99858 * 1 2 3 24 24 H 1.08999 * 109.47508 * 210.00200 * 1 2 3 25 25 H 1.08999 * 109.47172 * 330.00025 * 1 2 3 26 26 H 1.08003 * 119.90917 * 359.95213 * 3 2 1 27 27 H 1.09005 * 109.47147 * 270.01625 * 5 4 3 28 28 H 1.08994 * 109.47512 * 30.02329 * 5 4 3 29 29 H 1.09008 * 109.47038 * 150.02001 * 5 4 3 30 30 H 0.96695 * 114.00301 * 89.99685 * 7 6 4 31 31 H 0.96995 * 119.99808 * 325.38503 * 9 8 6 32 32 H 1.08999 * 109.47190 * 300.00494 * 12 10 9 33 33 H 1.09006 * 109.46621 * 59.99984 * 12 10 9 34 34 H 0.96996 * 119.99857 * 180.02562 * 17 16 14 35 35 H 1.08001 * 120.00282 * 0.04645 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1967 1.1985 0.0000 4 6 3.5791 1.2048 0.0005 5 6 4.3264 2.5134 -0.0001 6 6 4.2776 0.0082 0.0016 7 8 5.6373 0.0128 -0.0035 8 6 3.5834 -1.1994 0.0016 9 7 4.2846 -2.4127 0.0021 10 6 3.7897 -3.4766 0.6652 11 8 2.7000 -3.4089 1.1934 12 6 4.5904 -4.7505 0.7502 13 16 3.6644 -5.9830 1.6987 14 6 4.7999 -7.3291 1.6420 15 1 5.7399 -7.2210 1.1213 16 6 4.4859 -8.5287 2.2656 17 7 3.3400 -8.6605 2.8999 18 14 5.6895 -9.9560 2.2050 19 1 6.8947 -9.5548 1.4357 20 1 6.0852 -10.3289 3.5869 21 1 5.0451 -11.1190 1.5437 22 6 2.1962 -1.1978 0.0005 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6539 2.1322 -0.0008 27 1 4.5068 2.8284 -1.0279 28 1 3.7338 3.2705 0.5134 29 1 5.2795 2.3878 0.5140 30 1 6.0340 0.0169 0.8784 31 1 5.1260 -2.4868 -0.4747 32 1 4.7774 -5.1299 -0.2544 33 1 5.5405 -4.5500 1.2456 34 1 3.1207 -9.4987 3.3360 35 1 1.6550 -2.1324 0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601840141.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:18 Heat of formation + Delta-G solvation = -64.982312 kcal Electronic energy + Delta-G solvation = -18896.439277 eV Core-core repulsion = 15792.466815 eV Total energy + Delta-G solvation = -3103.972461 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.67285 -38.87240 -36.96767 -34.77115 -32.90779 -32.47277 -30.95803 -28.74835 -27.14523 -26.27559 -25.53276 -22.59584 -21.10397 -20.05271 -18.55991 -17.91486 -16.92431 -16.56168 -16.00237 -15.49696 -14.87751 -14.84298 -14.26440 -14.03722 -13.72647 -13.53492 -13.31089 -13.22781 -12.74860 -12.64830 -12.50409 -12.34241 -11.84744 -11.57620 -11.47385 -11.09926 -11.06735 -10.90581 -10.77141 -10.07551 -9.86575 -9.44265 -9.11540 -8.45827 -8.31130 -8.02104 -6.56375 -6.26356 -3.97718 1.13300 1.28533 2.84770 2.91166 3.19198 3.24916 3.29490 3.56407 3.58468 4.13709 4.15589 4.66431 4.75703 4.94167 5.09271 5.17989 5.21851 5.28204 5.43288 5.49136 5.54327 5.57170 5.61486 5.74028 5.77714 5.92873 6.03904 6.04753 6.17186 6.31904 6.48788 6.61977 6.90706 7.49617 7.53716 7.56074 8.31025 8.38493 9.19329 10.81134 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.032713 B = 0.003512 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.721635 B = 7971.550148 C = 8693.348091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.071 4.071 3 C -0.129 4.129 4 C -0.092 4.092 5 C -0.104 4.104 6 C 0.063 3.937 7 O -0.492 6.492 8 C 0.143 3.857 9 N -0.675 5.675 10 C 0.531 3.469 11 O -0.497 6.497 12 C -0.153 4.153 13 S -0.057 6.057 14 C -0.536 4.536 15 H 0.074 0.926 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.920 3.080 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.116 4.116 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.124 0.876 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.384 0.616 31 H 0.413 0.587 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.268 0.732 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 20.164 -6.587 21.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.072 4.072 3 C -0.148 4.148 4 C -0.093 4.093 5 C -0.161 4.161 6 C 0.016 3.984 7 O -0.301 6.301 8 C 0.047 3.953 9 N -0.322 5.322 10 C 0.319 3.681 11 O -0.370 6.370 12 C -0.304 4.304 13 S 0.170 5.830 14 C -0.685 4.685 15 H 0.092 0.908 16 C -0.136 4.136 17 N -0.502 5.502 18 Si 0.746 3.254 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.137 4.137 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.142 0.858 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.240 0.760 31 H 0.249 0.751 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.783 20.070 -6.184 21.016 hybrid contribution 2.619 -1.118 -0.330 2.867 sum 1.836 18.952 -6.514 20.124 Atomic orbital electron populations 1.20785 0.90805 1.03088 1.02336 1.19830 0.96354 0.92388 0.98614 1.20745 0.92726 0.97667 1.03692 1.19925 0.93891 0.94451 1.01025 1.20615 0.99788 0.93292 1.02390 1.17948 0.82874 0.90534 1.07087 1.84824 1.15655 1.96268 1.33382 1.18115 0.91677 0.84927 1.00550 1.43605 1.26161 1.09250 1.53206 1.20569 0.86698 0.84112 0.76761 1.90696 1.20154 1.82090 1.44032 1.23544 1.03575 0.96864 1.06391 1.85399 1.25421 1.05144 1.67066 1.22902 1.05890 0.99022 1.40638 0.90773 1.25001 0.95894 0.98225 0.94453 1.70024 1.21459 1.26272 1.32477 0.86096 0.80284 0.80946 0.78055 1.19579 1.20529 1.20530 1.21213 0.92107 0.99362 1.00989 0.91128 0.90989 0.91558 0.85832 0.91142 0.91658 0.91528 0.76038 0.75076 0.88795 0.88812 0.92174 0.83568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 36.00 0.36 -0.78 16 2 C -0.07 -0.89 5.88 -104.62 -0.62 -1.50 16 3 C -0.13 -1.43 9.34 -39.57 -0.37 -1.80 16 4 C -0.09 -1.03 5.89 -104.50 -0.62 -1.65 16 5 C -0.10 -0.86 9.79 36.01 0.35 -0.51 16 6 C 0.06 0.79 6.69 -39.07 -0.26 0.52 16 7 O -0.49 -5.21 12.10 -19.65 -0.24 -5.45 16 8 C 0.14 2.09 6.32 -83.49 -0.53 1.56 16 9 N -0.68 -9.86 5.19 -9.75 -0.05 -9.91 16 10 C 0.53 9.83 7.69 -10.99 -0.08 9.74 16 11 O -0.50 -10.86 13.28 5.55 0.07 -10.79 16 12 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 13 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 14 C -0.54 -15.07 9.50 30.94 0.29 -14.77 16 15 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 16 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 17 N -0.87 -25.86 13.22 55.49 0.73 -25.12 16 18 Si 0.92 21.20 29.55 -169.99 -5.02 16.17 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 C -0.12 -1.76 8.35 -39.42 -0.33 -2.09 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 25 H 0.07 0.54 8.08 -51.93 -0.42 0.13 16 26 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 29 H 0.07 0.51 7.53 -51.92 -0.39 0.12 16 30 H 0.38 2.72 9.06 45.56 0.41 3.14 16 31 H 0.41 4.95 8.56 -40.82 -0.35 4.60 16 32 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 33 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 34 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.15 2.50 6.20 -52.49 -0.33 2.17 16 LS Contribution 318.71 15.07 4.80 4.80 Total: -1.00 -33.80 318.71 -7.15 -40.96 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -3.57 Total: 5.15 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -1.67 Total: -12.08 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.68 Total: -35.04 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.16 Total: -16.24 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.80 -7.15 -40.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601840141.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.026 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds