Wall clock time and date at job start Tue Mar 31 2020 06:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08997 * 109.46678 * 2 1 4 4 C 1.50689 * 109.46924 * 120.00063 * 2 1 3 5 5 H 1.08001 * 119.99876 * 120.00098 * 4 2 1 6 6 C 1.37876 * 120.00335 * 300.00109 * 4 2 1 7 7 N 1.31507 * 119.99958 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00159 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46918 * 59.99927 * 8 6 4 10 10 H 1.48497 * 109.47163 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47077 * 300.00081 * 8 6 4 12 12 N 1.46499 * 109.46964 * 240.00397 * 2 1 3 13 13 C 1.34773 * 120.00390 * 84.99949 * 12 2 1 14 14 O 1.21563 * 119.99910 * 359.97438 * 13 12 2 15 15 C 1.47849 * 120.00338 * 180.02562 * 13 12 2 16 16 C 1.39591 * 120.14069 * 359.97438 * 15 13 12 17 17 C 1.37936 * 119.85299 * 180.02562 * 16 15 13 18 18 C 1.38381 * 120.14464 * 0.02562 * 17 16 15 19 19 C 1.38347 * 120.29167 * 0.02562 * 18 17 16 20 20 S 1.76197 * 119.92729 * 179.97438 * 19 18 17 21 21 C 1.81404 * 103.00066 * 89.99952 * 20 19 18 22 22 O 1.42105 * 102.99930 * 336.14744 * 20 19 18 23 23 C 1.37975 * 120.14299 * 0.24800 * 19 18 17 24 24 H 1.08992 * 109.46695 * 300.00103 * 1 2 3 25 25 H 1.09006 * 109.46872 * 60.00084 * 1 2 3 26 26 H 1.08991 * 109.46821 * 179.97438 * 1 2 3 27 27 H 0.97005 * 120.00174 * 179.97438 * 7 6 4 28 28 H 0.96996 * 119.99906 * 264.99828 * 12 2 1 29 29 H 1.08003 * 120.07630 * 359.97438 * 16 15 13 30 30 H 1.08000 * 119.93194 * 180.02562 * 17 16 15 31 31 H 1.07997 * 119.85849 * 179.97438 * 18 17 16 32 32 H 1.09000 * 109.46905 * 299.99726 * 21 20 19 33 33 H 1.08994 * 109.47180 * 59.99631 * 21 20 19 34 34 H 1.09001 * 109.47115 * 180.02562 * 21 20 19 35 35 H 1.08000 * 120.07574 * 179.72531 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.8075 -1.1191 4.0076 10 1 1.8279 -0.4194 5.2204 11 1 1.8281 -2.5199 4.0080 12 7 2.0184 -0.6905 -1.1962 13 6 2.1471 -0.0182 -2.3572 14 8 1.8576 1.1612 -2.4118 15 6 2.6394 -0.7152 -3.5645 16 6 2.9722 -2.0696 -3.5053 17 6 3.4314 -2.7139 -4.6352 18 6 3.5629 -2.0205 -5.8255 19 6 3.2358 -0.6778 -5.8907 20 16 3.4075 0.1959 -7.4111 21 6 1.7870 -0.0272 -8.1954 22 8 4.3812 -0.5674 -8.1102 23 6 2.7807 -0.0201 -4.7664 24 1 -0.3632 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7090 1.1613 3.4844 28 1 2.2491 -1.6317 -1.1527 29 1 2.8712 -2.6116 -2.5766 30 1 3.6888 -3.7618 -4.5908 31 1 3.9232 -2.5294 -6.7072 32 1 1.5979 -1.0906 -8.3424 33 1 1.0124 0.3944 -7.5550 34 1 1.7774 0.4799 -9.1602 35 1 2.5298 1.0291 -4.8175 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613771190.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:59 Heat of formation + Delta-G solvation = -51.484210 kcal Electronic energy + Delta-G solvation = -19066.196197 eV Core-core repulsion = 15962.809057 eV Total energy + Delta-G solvation = -3103.387140 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.80130 -37.96653 -35.90788 -34.89082 -32.64668 -31.31385 -31.10872 -29.02340 -28.67638 -25.30983 -23.96364 -22.94028 -21.13916 -19.69503 -18.59580 -17.32233 -16.51901 -15.88211 -15.63537 -15.32324 -15.03976 -14.89104 -14.32625 -14.17162 -13.84944 -13.75548 -13.20045 -12.97705 -12.61166 -12.48188 -12.20383 -11.81208 -11.74342 -11.53364 -11.14273 -10.99644 -10.79861 -10.46004 -10.37492 -10.27539 -9.38721 -9.23554 -9.11297 -9.00479 -8.59894 -8.56420 -7.99172 -6.16432 -4.26195 0.68108 1.05912 1.67933 2.47585 3.14083 3.23105 3.28638 3.29560 3.66822 3.96386 4.04570 4.33222 4.75032 4.86387 4.93807 5.04487 5.05081 5.16058 5.23376 5.38671 5.64195 5.73784 5.79846 6.07932 6.21239 6.23842 6.71047 6.78587 6.91147 7.09131 7.36638 7.49432 7.63902 7.85751 8.09654 8.56418 8.71258 9.00038 9.41246 10.89514 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.037492 B = 0.003483 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.641054 B = 8037.148758 C = 8450.783903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.052 0.948 4 C -0.537 4.537 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.701 5.701 13 C 0.542 3.458 14 O -0.549 6.549 15 C -0.136 4.136 16 C -0.053 4.053 17 C -0.142 4.142 18 C -0.040 4.040 19 C -0.472 4.472 20 S 1.337 4.663 21 C -0.498 4.498 22 O -0.861 6.861 23 C 0.009 3.991 24 H 0.091 0.909 25 H 0.016 0.984 26 H 0.026 0.974 27 H 0.266 0.734 28 H 0.388 0.612 29 H 0.133 0.867 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.109 -2.296 -16.668 16.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.069 0.931 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.348 5.348 13 C 0.327 3.673 14 O -0.429 6.429 15 C -0.140 4.140 16 C -0.072 4.072 17 C -0.161 4.161 18 C -0.060 4.060 19 C -0.568 4.568 20 S 1.534 4.466 21 C -0.655 4.655 22 O -0.857 6.857 23 C -0.011 4.011 24 H 0.110 0.890 25 H 0.035 0.965 26 H 0.045 0.955 27 H 0.076 0.924 28 H 0.221 0.779 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.099 0.901 33 H 0.132 0.868 34 H 0.124 0.876 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.583 -0.845 -16.859 17.076 hybrid contribution -0.212 -3.358 0.807 3.460 sum 2.372 -4.203 -16.052 16.762 Atomic orbital electron populations 1.22085 0.98289 0.99178 1.01036 1.18801 0.91129 0.94088 0.79720 0.93060 1.21161 1.32708 1.13346 0.90326 0.92146 1.24873 0.94738 0.94926 0.99038 1.69883 1.35678 1.22329 1.24082 0.86499 0.79211 0.79573 0.81770 1.20135 1.21071 1.20164 1.46518 1.64312 1.13556 1.10449 1.18165 0.79014 0.86827 0.83278 1.90728 1.51623 1.15448 1.85083 1.20466 1.03535 0.94473 0.95559 1.21622 0.93241 0.93715 0.98619 1.21181 1.01658 1.00413 0.92879 1.21226 0.93254 0.93254 0.98218 1.27597 1.11632 1.03238 1.14348 1.69655 0.82114 1.12265 0.82584 1.27768 1.19979 1.07313 1.10450 1.93073 1.49431 1.72503 1.70680 1.20973 0.90446 1.00032 0.89637 0.89010 0.96531 0.95471 0.92438 0.77891 0.84946 0.85325 0.85498 0.90076 0.86799 0.87648 0.83297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.26 37.16 0.34 -3.24 16 2 C 0.26 6.58 2.56 -69.08 -0.18 6.40 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 4 C -0.54 -13.96 8.73 -34.45 -0.30 -14.27 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.39 11.32 55.43 0.63 -23.77 16 8 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 N -0.70 -14.32 5.02 -55.88 -0.28 -14.60 16 13 C 0.54 10.62 7.74 -12.33 -0.10 10.53 16 14 O -0.55 -12.48 16.01 5.31 0.09 -12.40 16 15 C -0.14 -2.08 5.87 -104.97 -0.62 -2.70 16 16 C -0.05 -0.70 9.54 -39.19 -0.37 -1.07 16 17 C -0.14 -1.68 10.03 -39.64 -0.40 -2.08 16 18 C -0.04 -0.50 9.44 -39.49 -0.37 -0.87 16 19 C -0.47 -5.45 5.61 -39.64 -0.22 -5.68 16 20 S 1.34 11.41 14.18 -107.50 -1.52 9.89 16 21 C -0.50 -3.66 10.70 101.05 1.08 -2.58 16 22 O -0.86 -12.39 16.89 -35.23 -0.60 -12.99 16 23 C 0.01 0.12 9.30 -39.19 -0.36 -0.25 16 24 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.39 6.82 6.57 -40.82 -0.27 6.55 16 29 H 0.13 1.54 6.41 -52.48 -0.34 1.20 16 30 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.13 1.56 7.44 -52.49 -0.39 1.17 16 32 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 35 H 0.15 1.63 7.65 -52.49 -0.40 1.23 16 LS Contribution 314.89 15.07 4.75 4.75 Total: -1.00 -34.95 314.89 -7.74 -42.69 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -4.18 Total: 5.26 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -1.59 Total: -14.10 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.35 Total: -38.37 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.51 Total: -25.39 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 11.41 SS G_CDS: -1.52 Total: 9.89 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.95 -7.74 -42.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613771190.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.795 kcal (2) G-P(sol) polarization free energy of solvation -34.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds