Wall clock time and date at job start Tue Mar 31 2020 06:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08997 * 109.46678 * 2 1 4 4 C 1.50689 * 109.46924 * 120.00063 * 2 1 3 5 5 H 1.08001 * 119.99876 * 120.00098 * 4 2 1 6 6 C 1.37876 * 120.00335 * 300.00109 * 4 2 1 7 7 N 1.31507 * 119.99958 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00159 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46918 * 59.99927 * 8 6 4 10 10 H 1.48497 * 109.47163 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47077 * 300.00081 * 8 6 4 12 12 N 1.46499 * 109.46964 * 240.00397 * 2 1 3 13 13 C 1.34773 * 120.00390 * 84.99949 * 12 2 1 14 14 O 1.21563 * 119.99910 * 359.97438 * 13 12 2 15 15 C 1.47849 * 120.00338 * 180.02562 * 13 12 2 16 16 C 1.39591 * 120.14069 * 359.97438 * 15 13 12 17 17 C 1.37936 * 119.85299 * 180.02562 * 16 15 13 18 18 C 1.38381 * 120.14464 * 0.02562 * 17 16 15 19 19 C 1.38347 * 120.29167 * 0.02562 * 18 17 16 20 20 S 1.76197 * 119.92729 * 179.97438 * 19 18 17 21 21 C 1.81404 * 103.00066 * 89.99952 * 20 19 18 22 22 O 1.42105 * 102.99930 * 336.14744 * 20 19 18 23 23 C 1.37975 * 120.14299 * 0.24800 * 19 18 17 24 24 H 1.08992 * 109.46695 * 300.00103 * 1 2 3 25 25 H 1.09006 * 109.46872 * 60.00084 * 1 2 3 26 26 H 1.08991 * 109.46821 * 179.97438 * 1 2 3 27 27 H 0.97005 * 120.00174 * 179.97438 * 7 6 4 28 28 H 0.96996 * 119.99906 * 264.99828 * 12 2 1 29 29 H 1.08003 * 120.07630 * 359.97438 * 16 15 13 30 30 H 1.08000 * 119.93194 * 180.02562 * 17 16 15 31 31 H 1.07997 * 119.85849 * 179.97438 * 18 17 16 32 32 H 1.09000 * 109.46905 * 299.99726 * 21 20 19 33 33 H 1.08994 * 109.47180 * 59.99631 * 21 20 19 34 34 H 1.09001 * 109.47115 * 180.02562 * 21 20 19 35 35 H 1.08000 * 120.07574 * 179.72531 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.8075 -1.1191 4.0076 10 1 1.8279 -0.4194 5.2204 11 1 1.8281 -2.5199 4.0080 12 7 2.0184 -0.6905 -1.1962 13 6 2.1471 -0.0182 -2.3572 14 8 1.8576 1.1612 -2.4118 15 6 2.6394 -0.7152 -3.5645 16 6 2.9722 -2.0696 -3.5053 17 6 3.4314 -2.7139 -4.6352 18 6 3.5629 -2.0205 -5.8255 19 6 3.2358 -0.6778 -5.8907 20 16 3.4075 0.1959 -7.4111 21 6 1.7870 -0.0272 -8.1954 22 8 4.3812 -0.5674 -8.1102 23 6 2.7807 -0.0201 -4.7664 24 1 -0.3632 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7090 1.1613 3.4844 28 1 2.2491 -1.6317 -1.1527 29 1 2.8712 -2.6116 -2.5766 30 1 3.6888 -3.7618 -4.5908 31 1 3.9232 -2.5294 -6.7072 32 1 1.5979 -1.0906 -8.3424 33 1 1.0124 0.3944 -7.5550 34 1 1.7774 0.4799 -9.1602 35 1 2.5298 1.0291 -4.8175 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613771190.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:58 Heat of formation + Delta-G solvation = -76.521349 kcal Electronic energy + Delta-G solvation = -19067.281889 eV Core-core repulsion = 15962.809057 eV Total energy + Delta-G solvation = -3104.472831 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.12869 -39.29020 -36.88374 -36.72787 -34.44794 -32.62175 -32.12303 -30.46475 -29.60739 -27.33987 -25.27296 -23.95690 -22.73064 -21.30749 -19.91287 -18.43520 -17.93142 -17.32799 -17.02402 -16.58907 -16.23264 -15.98367 -15.80580 -15.59716 -14.91015 -14.75515 -14.46739 -14.41385 -13.86190 -13.66723 -13.47684 -13.13357 -12.99078 -12.85351 -12.74020 -12.71692 -12.55048 -12.26408 -12.15434 -11.40616 -11.11962 -10.84160 -10.58479 -10.37441 -10.11465 -9.73947 -9.35485 -8.17298 -6.34875 -0.34141 0.05614 0.88962 1.46043 1.47646 1.55448 1.67311 1.94852 2.32675 2.55330 2.73649 2.96961 3.13386 3.70775 3.83328 4.01839 4.13792 4.31289 4.38524 4.52252 4.56458 4.76674 4.84394 4.93285 5.07391 5.10458 5.18023 5.20975 5.21740 5.43514 5.58162 5.66460 5.75383 5.89976 6.09600 6.71427 6.89978 7.30451 7.47335 8.88789 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.037492 B = 0.003483 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.641054 B = 8037.148758 C = 8450.783903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H 0.004 0.996 4 C -0.551 4.551 5 H 0.072 0.928 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.971 3.029 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.265 1.265 12 N -0.700 5.700 13 C 0.542 3.458 14 O -0.588 6.588 15 C -0.159 4.159 16 C -0.053 4.053 17 C -0.138 4.138 18 C -0.048 4.048 19 C -0.474 4.474 20 S 1.395 4.605 21 C -0.496 4.496 22 O -0.916 6.916 23 C 0.010 3.990 24 H 0.068 0.932 25 H 0.015 0.985 26 H 0.039 0.961 27 H 0.266 0.734 28 H 0.403 0.597 29 H 0.146 0.854 30 H 0.157 0.843 31 H 0.129 0.871 32 H 0.068 0.932 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.468 -3.794 -17.550 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.022 0.978 4 C -0.589 4.589 5 H 0.090 0.910 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.795 3.205 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.189 1.189 12 N -0.348 5.348 13 C 0.330 3.670 14 O -0.471 6.471 15 C -0.163 4.163 16 C -0.072 4.072 17 C -0.157 4.157 18 C -0.068 4.068 19 C -0.569 4.569 20 S 1.592 4.408 21 C -0.654 4.654 22 O -0.912 6.912 23 C -0.010 4.010 24 H 0.087 0.913 25 H 0.034 0.966 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.239 0.761 29 H 0.163 0.837 30 H 0.175 0.825 31 H 0.147 0.853 32 H 0.087 0.913 33 H 0.151 0.849 34 H 0.144 0.856 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.968 -2.388 -17.746 18.150 hybrid contribution -0.362 -2.858 0.942 3.031 sum 2.606 -5.246 -16.803 17.795 Atomic orbital electron populations 1.21906 0.98075 0.99485 0.99834 1.18403 0.91272 0.92128 0.81506 0.97767 1.21504 1.32838 1.13703 0.90847 0.90962 1.25759 0.94814 0.95550 1.02195 1.70031 1.36785 1.23764 1.24738 0.85417 0.78633 0.78715 0.77688 1.19657 1.21133 1.18932 1.46248 1.64675 1.14208 1.09702 1.18765 0.77823 0.86444 0.84011 1.90696 1.53258 1.17288 1.85811 1.20185 1.06225 0.95547 0.94358 1.21760 0.92851 0.92845 0.99745 1.21452 1.00564 1.01700 0.91958 1.21481 0.92921 0.93738 0.98626 1.27920 1.10561 1.03231 1.15172 1.69119 0.81433 1.09925 0.80302 1.27740 1.18895 1.06991 1.11794 1.92964 1.52742 1.73660 1.71817 1.21146 0.89944 1.00773 0.89097 0.91300 0.96567 0.94219 0.92458 0.76135 0.83675 0.82528 0.85307 0.91252 0.84918 0.85630 0.81863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.66 9.26 71.99 0.67 -6.00 16 2 C 0.27 13.77 2.56 44.25 0.11 13.88 16 3 H 0.00 0.26 7.58 -2.39 -0.02 0.25 16 4 C -0.55 -28.67 8.73 25.60 0.22 -28.44 16 5 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 6 C 0.02 0.91 5.30 84.66 0.45 1.36 16 7 N -0.92 -51.54 11.32 21.45 0.24 -51.29 16 8 Si 0.97 41.24 29.54 68.60 2.03 43.26 16 9 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 10 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 12 N -0.70 -28.71 5.02 -448.97 -2.25 -30.96 16 13 C 0.54 21.41 7.74 86.79 0.67 22.08 16 14 O -0.59 -27.47 16.01 -3.91 -0.06 -27.53 16 15 C -0.16 -4.74 5.87 -20.09 -0.12 -4.85 16 16 C -0.05 -1.30 9.54 22.52 0.21 -1.09 16 17 C -0.14 -2.93 10.03 22.23 0.22 -2.70 16 18 C -0.05 -1.10 9.44 22.33 0.21 -0.89 16 19 C -0.47 -10.12 5.61 22.23 0.12 -10.00 16 20 S 1.39 21.21 14.18 -56.49 -0.80 20.41 16 21 C -0.50 -5.92 10.70 113.37 1.21 -4.71 16 22 O -0.92 -25.16 16.89 -148.98 -2.52 -27.68 16 23 C 0.01 0.25 9.30 22.53 0.21 0.46 16 24 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 25 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.27 14.21 8.31 -92.70 -0.77 13.44 16 28 H 0.40 13.85 6.57 -92.71 -0.61 13.24 16 29 H 0.15 3.08 6.41 -2.91 -0.02 3.06 16 30 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 31 H 0.13 2.93 7.44 -2.91 -0.02 2.91 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.16 3.39 7.65 -2.91 -0.02 3.37 16 Total: -1.00 -76.34 314.89 1.34 -75.00 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.50 Total: 19.69 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: 4.20 Total: -20.90 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -2.01 Total: -82.25 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -2.58 Total: -55.21 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 16 Polarization: 21.21 SS G_CDS: -0.80 Total: 20.41 kcal Total: -76.34 1.34 -75.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613771190.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.518 kcal (2) G-P(sol) polarization free energy of solvation -76.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds