Wall clock time and date at job start Tue Mar 31 2020 06:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 119.99888 * 2 1 4 4 S 1.81401 * 109.47213 * 114.99762 * 3 2 1 5 5 O 1.42101 * 110.53884 * 68.37754 * 4 3 2 6 6 O 1.42089 * 110.54458 * 291.62406 * 4 3 2 7 7 N 1.65603 * 104.45089 * 179.97438 * 4 3 2 8 8 C 1.36932 * 120.00324 * 270.00762 * 7 4 3 9 9 H 1.07999 * 119.99828 * 321.72564 * 8 7 4 10 10 C 1.38814 * 120.00097 * 141.73114 * 8 7 4 11 11 N 1.31616 * 120.00186 * 339.15124 * 10 8 7 12 12 Si 1.86802 * 119.99802 * 159.15201 * 10 8 7 13 13 H 1.48495 * 109.47452 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47178 * 119.99724 * 12 10 8 15 15 H 1.48499 * 109.47363 * 239.99813 * 12 10 8 16 16 C 1.46508 * 119.99762 * 90.00102 * 7 4 3 17 17 C 1.50693 * 109.46818 * 95.94643 * 16 7 4 18 18 C 1.38240 * 119.99917 * 85.82986 * 17 16 7 19 19 C 1.38228 * 120.00114 * 179.97438 * 18 17 16 20 20 C 1.38241 * 120.00330 * 359.97438 * 19 18 17 21 21 C 1.38231 * 119.99694 * 0.27460 * 20 19 18 22 22 C 1.38237 * 120.00482 * 265.80845 * 17 16 7 23 23 H 1.07993 * 120.00029 * 180.02562 * 1 2 3 24 24 H 1.07996 * 119.99913 * 359.97438 * 1 2 3 25 25 H 1.07996 * 119.99913 * 180.02562 * 2 1 3 26 26 H 1.09011 * 109.47458 * 355.00014 * 3 2 1 27 27 H 1.09006 * 109.47290 * 235.00204 * 3 2 1 28 28 H 0.96997 * 120.00316 * 180.02562 * 11 10 8 29 29 H 1.08996 * 109.46641 * 335.95119 * 16 7 4 30 30 H 1.08996 * 109.47010 * 215.94845 * 16 7 4 31 31 H 1.07999 * 119.99991 * 359.97438 * 18 17 16 32 32 H 1.08005 * 120.00097 * 180.02562 * 19 18 17 33 33 H 1.07994 * 120.00017 * 179.97438 * 20 19 18 34 34 H 1.07996 * 120.00602 * 179.72581 * 21 20 19 35 35 H 1.07996 * 119.99457 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 16 2.9917 1.4674 1.5501 5 8 4.0465 0.5166 1.6014 6 8 2.1047 1.6377 2.6470 7 7 3.7641 2.9264 1.4184 8 6 5.0139 2.9918 0.8628 9 1 5.7349 2.2129 1.0623 10 6 5.3543 4.0594 0.0435 11 7 4.4108 4.7740 -0.5323 12 14 7.1514 4.4819 -0.2419 13 1 8.0088 3.5337 0.5137 14 1 7.4594 4.3814 -1.6912 15 1 7.4146 5.8667 0.2253 16 6 3.1100 4.1472 1.8962 17 6 3.5799 4.4544 3.2946 18 6 4.7413 5.1781 3.4902 19 6 5.1721 5.4603 4.7730 20 6 4.4412 5.0193 5.8603 21 6 3.2826 4.2913 5.6649 22 6 2.8493 4.0129 4.3820 23 1 -0.5400 -0.9352 0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3585 2.1317 -0.0896 27 1 2.7557 1.3251 -0.8419 28 1 4.6486 5.5198 -1.1051 29 1 2.0296 4.0030 1.8994 30 1 3.3639 4.9772 1.2370 31 1 5.3122 5.5230 2.6408 32 1 6.0793 6.0261 4.9257 33 1 4.7780 5.2395 6.8625 34 1 2.7138 3.9429 6.5143 35 1 1.9415 3.4481 4.2292 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711093722.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:42 Heat of formation + Delta-G solvation = -23.799885 kcal Electronic energy + Delta-G solvation = -20415.505324 eV Core-core repulsion = 17313.318667 eV Total energy + Delta-G solvation = -3102.186657 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.63133 -35.75669 -35.70456 -34.53849 -34.29126 -32.08489 -30.35797 -30.21496 -26.92511 -26.03563 -23.79820 -21.86495 -20.64441 -19.76798 -18.36169 -17.14293 -16.65187 -15.86951 -15.66784 -14.91813 -14.78596 -14.42524 -14.26707 -14.18207 -13.48552 -13.02755 -12.78175 -12.73796 -12.14671 -11.83506 -11.65997 -11.58155 -11.28283 -11.10360 -10.96036 -10.77105 -10.74510 -10.61326 -10.46307 -10.29437 -10.21472 -10.02827 -9.31415 -8.80011 -8.25897 -8.08918 -7.89469 -6.68286 -4.24313 1.46168 2.04294 2.07120 2.64556 3.02533 3.11866 3.19488 3.87316 4.19820 4.53018 4.65199 5.04432 5.23471 5.39759 5.48051 5.51686 5.56490 5.63388 5.88060 6.00032 6.04798 6.16678 6.25528 6.28912 6.37318 6.64195 6.71196 6.88162 6.94957 7.01768 7.08606 7.10692 7.13252 7.28560 7.54366 7.70240 8.22630 8.59803 9.09672 10.27875 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.013266 B = 0.009318 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.207181 B = 3004.369808 C = 4536.457731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.138 4.138 3 C -0.625 4.625 4 S 2.486 3.514 5 O -0.981 6.981 6 O -0.996 6.996 7 N -0.802 5.802 8 C -0.240 4.240 9 H 0.108 0.892 10 C 0.038 3.962 11 N -0.827 5.827 12 Si 0.915 3.085 13 H -0.260 1.260 14 H -0.277 1.277 15 H -0.274 1.274 16 C 0.160 3.840 17 C -0.079 4.079 18 C -0.090 4.090 19 C -0.136 4.136 20 C -0.132 4.132 21 C -0.135 4.135 22 C -0.102 4.102 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.113 0.887 26 H 0.112 0.888 27 H 0.126 0.874 28 H 0.276 0.724 29 H 0.062 0.938 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.028 1.995 2.829 4.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.158 4.158 3 C -0.743 4.743 4 S 2.588 3.412 5 O -0.971 6.971 6 O -0.986 6.986 7 N -0.624 5.624 8 C -0.387 4.387 9 H 0.126 0.874 10 C -0.175 4.175 11 N -0.465 5.465 12 Si 0.740 3.260 13 H -0.184 1.184 14 H -0.203 1.203 15 H -0.199 1.199 16 C 0.034 3.966 17 C -0.082 4.082 18 C -0.109 4.109 19 C -0.154 4.154 20 C -0.150 4.150 21 C -0.153 4.153 22 C -0.121 4.121 23 H 0.116 0.884 24 H 0.115 0.885 25 H 0.131 0.869 26 H 0.130 0.870 27 H 0.144 0.856 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.130 0.870 31 H 0.139 0.861 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.262 1.352 3.434 4.329 hybrid contribution 0.508 0.347 -1.011 1.184 sum -1.753 1.699 2.424 3.440 Atomic orbital electron populations 1.23809 0.95746 1.01692 1.02278 1.22472 0.96167 0.96950 1.00198 1.30210 1.13841 1.00612 1.29632 1.12887 0.73779 0.76336 0.78228 1.93360 1.53149 1.63149 1.87438 1.93330 1.68162 1.85776 1.51293 1.53446 1.21250 1.20847 1.66872 1.19820 0.86761 1.09300 1.22814 0.87431 1.25801 0.99953 0.97977 0.93817 1.69949 1.33441 1.18247 1.24901 0.86017 0.82176 0.79116 0.78671 1.18359 1.20252 1.19943 1.20241 0.94699 0.91229 0.90460 1.20473 0.95089 0.96180 0.96432 1.21090 0.95699 0.97497 0.96609 1.21048 0.99785 1.01546 0.92988 1.20982 0.96079 0.99851 0.98121 1.21053 0.97233 1.00020 0.96966 1.21403 1.00693 0.98005 0.92001 0.88437 0.88453 0.86912 0.86983 0.85608 0.91341 0.91933 0.87033 0.86095 0.86950 0.87164 0.86955 0.85012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.09 14.32 29.01 0.42 -2.68 16 2 C -0.14 -2.49 9.52 -36.03 -0.34 -2.84 16 3 C -0.62 -12.41 6.62 36.00 0.24 -12.17 16 4 S 2.49 57.10 5.31 -107.50 -0.57 56.53 16 5 O -0.98 -25.46 16.90 -57.54 -0.97 -26.44 16 6 O -1.00 -23.73 15.29 -57.54 -0.88 -24.61 16 7 N -0.80 -18.57 2.73 -61.09 -0.17 -18.73 16 8 C -0.24 -5.76 9.00 -15.06 -0.14 -5.89 16 9 H 0.11 2.69 7.39 -52.49 -0.39 2.30 16 10 C 0.04 0.85 5.02 -17.43 -0.09 0.76 16 11 N -0.83 -18.86 11.41 55.49 0.63 -18.22 16 12 Si 0.92 17.92 29.60 -169.99 -5.03 12.89 16 13 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 14 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 15 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 16 C 0.16 3.43 5.03 -5.19 -0.03 3.40 16 17 C -0.08 -1.63 5.42 -104.62 -0.57 -2.20 16 18 C -0.09 -1.73 9.72 -39.58 -0.38 -2.12 16 19 C -0.14 -2.28 10.05 -39.58 -0.40 -2.68 16 20 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 21 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 22 C -0.10 -2.00 9.15 -39.58 -0.36 -2.36 16 23 H 0.10 1.27 8.06 -52.49 -0.42 0.84 16 24 H 0.10 1.46 7.84 -52.49 -0.41 1.05 16 25 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 26 H 0.11 2.11 7.79 -51.92 -0.40 1.70 16 27 H 0.13 2.51 8.14 -51.92 -0.42 2.09 16 28 H 0.28 5.88 8.31 -40.82 -0.34 5.54 16 29 H 0.06 1.26 7.49 -51.93 -0.39 0.87 16 30 H 0.11 2.45 5.49 -51.93 -0.29 2.16 16 31 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 32 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 33 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.13 2.63 6.93 -52.49 -0.36 2.27 16 LS Contribution 314.24 15.07 4.74 4.74 Total: -1.00 -27.82 314.24 -9.04 -36.85 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -4.34 Total: 10.97 kcal Atomic # 6 Polarization: -31.53 SS G_CDS: -2.45 Total: -33.98 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.47 Total: -36.96 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -1.85 Total: -51.05 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Atomic # 16 Polarization: 57.10 SS G_CDS: -0.57 Total: 56.53 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.82 -9.04 -36.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711093722.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.052 kcal (2) G-P(sol) polarization free energy of solvation -27.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds