Wall clock time and date at job start Tue Mar 31 2020 05:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38365 * 119.85777 * 2 1 4 4 C 1.37922 * 120.17683 * 180.21124 * 3 2 1 5 5 C 1.39670 * 119.89673 * 359.51671 * 4 3 2 6 6 C 1.47727 * 120.13699 * 180.23352 * 5 4 3 7 7 O 1.21595 * 120.00128 * 314.48463 * 6 5 4 8 8 N 1.34777 * 120.00483 * 134.48572 * 6 5 4 9 9 C 1.36871 * 120.00484 * 185.33635 * 8 6 5 10 10 H 1.08001 * 119.99879 * 322.71188 * 9 8 6 11 11 C 1.39047 * 120.00200 * 142.71414 * 9 8 6 12 12 N 1.31364 * 120.00047 * 160.30786 * 11 9 8 13 13 Si 1.86796 * 119.99843 * 340.30403 * 11 9 8 14 14 H 1.48509 * 109.47114 * 95.09693 * 13 11 9 15 15 H 1.48507 * 109.47159 * 215.09107 * 13 11 9 16 16 H 1.48501 * 109.47518 * 335.09613 * 13 11 9 17 17 C 1.46504 * 119.99741 * 5.33402 * 8 6 5 18 18 C 1.50691 * 109.47147 * 95.69343 * 17 8 6 19 19 O 1.20833 * 120.00185 * 0.02562 * 18 17 8 20 20 O 1.34237 * 119.99965 * 180.02562 * 18 17 8 21 21 C 1.39601 * 119.72612 * 0.25280 * 5 4 3 22 22 C 1.38195 * 119.81555 * 359.97438 * 21 5 4 23 23 F 1.35102 * 119.94541 * 179.97438 * 22 21 5 24 24 H 1.08999 * 109.47577 * 270.25179 * 1 2 3 25 25 H 1.08997 * 109.46976 * 30.25152 * 1 2 3 26 26 H 1.09005 * 109.46835 * 150.24910 * 1 2 3 27 27 H 1.07997 * 119.91162 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.05495 * 179.79369 * 4 3 2 29 29 H 0.97000 * 119.99701 * 180.02562 * 12 11 9 30 30 H 1.09004 * 109.47359 * 215.69619 * 17 8 6 31 31 H 1.09004 * 109.47029 * 335.69522 * 17 8 6 32 32 H 0.96700 * 116.99924 * 180.02562 * 20 18 17 33 33 H 1.08002 * 120.09147 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2000 0.0000 4 6 3.5751 1.2077 -0.0044 5 6 4.2780 0.0008 0.0014 6 6 5.7553 0.0028 0.0019 7 8 6.3625 0.7381 -0.7525 8 7 6.4301 -0.8103 0.8385 9 6 7.7942 -0.7312 0.9177 10 1 8.3767 -0.5426 0.0281 11 6 8.4300 -0.8937 2.1436 12 7 9.7058 -1.2039 2.1858 13 14 7.4701 -0.6708 3.7304 14 1 6.9890 -1.9922 4.2077 15 1 8.3506 -0.0631 4.7604 16 1 6.3076 0.2201 3.4848 17 6 5.7034 -1.7789 1.6632 18 6 5.6916 -3.1180 0.9724 19 8 6.2349 -3.2501 -0.0988 20 8 5.0776 -4.1643 1.5470 21 6 3.5788 -1.2075 0.0062 22 6 2.1968 -1.2017 0.0058 23 9 1.5175 -2.3695 0.0099 24 1 -0.3634 0.0045 1.0276 25 1 -0.3633 0.8877 -0.5177 26 1 -0.3633 -0.8923 -0.5100 27 1 1.6521 2.1331 -0.0004 28 1 4.1107 2.1455 -0.0078 29 1 10.1493 -1.3176 3.0409 30 1 6.1957 -1.8736 2.6312 31 1 4.6790 -1.4360 1.8086 32 1 5.0969 -5.0030 1.0661 33 1 4.1164 -2.1442 0.0102 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738503851.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:39 Heat of formation + Delta-G solvation = -117.739688 kcal Electronic energy + Delta-G solvation = -22486.672325 eV Core-core repulsion = 18814.198956 eV Total energy + Delta-G solvation = -3672.473369 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.87065 -40.46155 -39.24590 -37.90289 -35.81295 -34.94600 -33.06840 -32.09867 -30.55760 -28.22824 -27.70517 -25.03021 -22.86879 -22.09866 -21.75974 -19.71343 -17.89619 -17.45763 -17.25113 -16.83822 -16.14419 -16.11155 -15.78994 -15.51530 -15.23226 -14.89554 -14.06803 -13.76775 -13.62133 -13.45576 -13.17325 -12.91922 -12.70354 -12.60292 -12.23790 -12.15627 -11.76444 -11.56341 -11.29596 -11.08326 -11.05671 -10.64009 -10.20801 -10.04726 -9.35066 -8.92735 -8.83346 -8.52830 -8.09048 -6.55878 -4.14053 0.95873 1.20641 2.56309 2.86411 2.99691 3.08855 3.12067 3.43937 3.78482 3.94271 4.08789 4.33071 4.63786 4.71767 4.80116 5.02939 5.16106 5.25074 5.29751 5.43388 5.49685 5.53117 5.60469 5.72202 5.90259 6.04902 6.06966 6.30591 6.44091 6.81589 6.86792 7.29318 8.04441 8.22578 8.31248 8.72023 9.07155 9.44492 10.55103 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019632 B = 0.007062 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.926768 B = 3963.789153 C = 4497.236035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.118 4.118 3 C -0.095 4.095 4 C -0.081 4.081 5 C -0.081 4.081 6 C 0.512 3.488 7 O -0.537 6.537 8 N -0.437 5.437 9 C -0.311 4.311 10 H 0.115 0.885 11 C 0.060 3.940 12 N -0.848 5.848 13 Si 0.860 3.140 14 H -0.268 1.268 15 H -0.277 1.277 16 H -0.256 1.256 17 C 0.089 3.911 18 C 0.454 3.546 19 O -0.483 6.483 20 O -0.524 6.524 21 C -0.141 4.141 22 C 0.094 3.906 23 F -0.138 7.138 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.137 0.863 28 H 0.140 0.860 29 H 0.278 0.722 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.403 0.597 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.151 -0.476 1.790 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.119 4.119 3 C -0.113 4.113 4 C -0.100 4.100 5 C -0.085 4.085 6 C 0.301 3.699 7 O -0.417 6.417 8 N -0.157 5.157 9 C -0.438 4.438 10 H 0.132 0.868 11 C -0.147 4.147 12 N -0.483 5.483 13 Si 0.687 3.313 14 H -0.195 1.195 15 H -0.203 1.203 16 H -0.180 1.180 17 C -0.037 4.037 18 C 0.293 3.707 19 O -0.368 6.368 20 O -0.336 6.336 21 C -0.161 4.161 22 C 0.075 3.925 23 F -0.116 7.116 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.154 0.846 28 H 0.157 0.843 29 H 0.089 0.911 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.262 0.738 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.470 0.163 1.409 16.531 hybrid contribution -0.305 -1.021 0.670 1.258 sum -16.776 -0.858 2.079 16.926 Atomic orbital electron populations 1.20720 0.90135 1.03245 1.02741 1.20001 0.96956 0.91865 1.03052 1.20861 0.93677 0.97015 0.99748 1.21252 0.93612 0.97751 0.97395 1.20223 0.95206 0.93041 1.00024 1.17982 0.85262 0.82067 0.84613 1.90695 1.68932 1.42283 1.39823 1.43263 1.07194 1.27516 1.37777 1.19107 0.78028 1.49959 0.96696 0.86780 1.25395 0.95641 0.95574 0.98118 1.69699 1.10452 1.40974 1.27197 0.87183 0.81194 0.79081 0.83863 1.19509 1.20285 1.18027 1.21766 1.00668 0.84965 0.96274 1.24328 0.74884 0.86752 0.84692 1.90757 1.40116 1.84134 1.21747 1.84571 1.72339 1.22052 1.54622 1.21498 0.92465 0.99236 1.02888 1.17326 0.89394 0.81150 1.04637 1.91473 1.79944 1.46191 1.94038 0.90794 0.90933 0.91260 0.84561 0.84262 0.91140 0.87736 0.86826 0.73829 0.85063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.83 36.01 0.35 -0.67 16 2 C -0.12 -1.47 5.89 -104.45 -0.62 -2.09 16 3 C -0.09 -1.16 9.68 -39.65 -0.38 -1.54 16 4 C -0.08 -1.26 9.69 -39.16 -0.38 -1.64 16 5 C -0.08 -1.53 5.06 -104.98 -0.53 -2.07 16 6 C 0.51 12.22 7.22 -12.38 -0.09 12.13 16 7 O -0.54 -14.61 16.84 5.28 0.09 -14.52 16 8 N -0.44 -10.74 1.73 -117.21 -0.20 -10.94 16 9 C -0.31 -8.77 9.24 -15.00 -0.14 -8.91 16 10 H 0.11 3.65 7.86 -52.49 -0.41 3.24 16 11 C 0.06 1.63 5.37 -17.45 -0.09 1.53 16 12 N -0.85 -24.01 13.95 55.50 0.77 -23.23 16 13 Si 0.86 19.19 24.85 -169.99 -4.22 14.97 16 14 H -0.27 -5.55 6.72 56.52 0.38 -5.17 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 17 C 0.09 1.84 4.47 -5.20 -0.02 1.82 16 18 C 0.45 9.05 5.93 36.00 0.21 9.26 16 19 O -0.48 -11.28 16.88 -18.75 -0.32 -11.60 16 20 O -0.52 -7.98 13.42 -39.27 -0.53 -8.51 16 21 C -0.14 -2.44 7.43 -39.09 -0.29 -2.73 16 22 C 0.09 1.40 7.23 -39.48 -0.29 1.12 16 23 F -0.14 -2.00 16.46 2.25 0.04 -1.96 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 26 H 0.07 0.63 7.63 -51.93 -0.40 0.24 16 27 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 28 H 0.14 2.06 8.06 -52.49 -0.42 1.64 16 29 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.11 2.20 2.78 -51.93 -0.14 2.05 16 31 H 0.11 2.01 5.26 -51.93 -0.27 1.74 16 32 H 0.40 4.22 9.10 45.56 0.41 4.64 16 33 H 0.13 2.39 4.31 -52.49 -0.23 2.16 16 LS Contribution 289.69 15.07 4.37 4.37 Total: -1.00 -33.43 289.69 -4.15 -37.58 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -1.88 Total: 7.63 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -2.26 Total: 6.21 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.57 Total: -34.18 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -0.75 Total: -34.62 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.22 Total: 14.97 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.43 -4.15 -37.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738503851.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.159 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds