Wall clock time and date at job start Tue Mar 31 2020 05:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38365 * 119.85777 * 2 1 4 4 C 1.37922 * 120.17683 * 180.21124 * 3 2 1 5 5 C 1.39670 * 119.89673 * 359.51671 * 4 3 2 6 6 C 1.47727 * 120.13699 * 180.23352 * 5 4 3 7 7 O 1.21595 * 120.00128 * 314.48463 * 6 5 4 8 8 N 1.34777 * 120.00483 * 134.48572 * 6 5 4 9 9 C 1.36871 * 120.00484 * 185.33635 * 8 6 5 10 10 H 1.08001 * 119.99879 * 322.71188 * 9 8 6 11 11 C 1.39047 * 120.00200 * 142.71414 * 9 8 6 12 12 N 1.31364 * 120.00047 * 160.30786 * 11 9 8 13 13 Si 1.86796 * 119.99843 * 340.30403 * 11 9 8 14 14 H 1.48509 * 109.47114 * 95.09693 * 13 11 9 15 15 H 1.48507 * 109.47159 * 215.09107 * 13 11 9 16 16 H 1.48501 * 109.47518 * 335.09613 * 13 11 9 17 17 C 1.46504 * 119.99741 * 5.33402 * 8 6 5 18 18 C 1.50691 * 109.47147 * 95.69343 * 17 8 6 19 19 O 1.20833 * 120.00185 * 0.02562 * 18 17 8 20 20 O 1.34237 * 119.99965 * 180.02562 * 18 17 8 21 21 C 1.39601 * 119.72612 * 0.25280 * 5 4 3 22 22 C 1.38195 * 119.81555 * 359.97438 * 21 5 4 23 23 F 1.35102 * 119.94541 * 179.97438 * 22 21 5 24 24 H 1.08999 * 109.47577 * 270.25179 * 1 2 3 25 25 H 1.08997 * 109.46976 * 30.25152 * 1 2 3 26 26 H 1.09005 * 109.46835 * 150.24910 * 1 2 3 27 27 H 1.07997 * 119.91162 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.05495 * 179.79369 * 4 3 2 29 29 H 0.97000 * 119.99701 * 180.02562 * 12 11 9 30 30 H 1.09004 * 109.47359 * 215.69619 * 17 8 6 31 31 H 1.09004 * 109.47029 * 335.69522 * 17 8 6 32 32 H 0.96700 * 116.99924 * 180.02562 * 20 18 17 33 33 H 1.08002 * 120.09147 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2000 0.0000 4 6 3.5751 1.2077 -0.0044 5 6 4.2780 0.0008 0.0014 6 6 5.7553 0.0028 0.0019 7 8 6.3625 0.7381 -0.7525 8 7 6.4301 -0.8103 0.8385 9 6 7.7942 -0.7312 0.9177 10 1 8.3767 -0.5426 0.0281 11 6 8.4300 -0.8937 2.1436 12 7 9.7058 -1.2039 2.1858 13 14 7.4701 -0.6708 3.7304 14 1 6.9890 -1.9922 4.2077 15 1 8.3506 -0.0631 4.7604 16 1 6.3076 0.2201 3.4848 17 6 5.7034 -1.7789 1.6632 18 6 5.6916 -3.1180 0.9724 19 8 6.2349 -3.2501 -0.0988 20 8 5.0776 -4.1643 1.5470 21 6 3.5788 -1.2075 0.0062 22 6 2.1968 -1.2017 0.0058 23 9 1.5175 -2.3695 0.0099 24 1 -0.3634 0.0045 1.0276 25 1 -0.3633 0.8877 -0.5177 26 1 -0.3633 -0.8923 -0.5100 27 1 1.6521 2.1331 -0.0004 28 1 4.1107 2.1455 -0.0078 29 1 10.1493 -1.3176 3.0409 30 1 6.1957 -1.8736 2.6312 31 1 4.6790 -1.4360 1.8086 32 1 5.0969 -5.0030 1.0661 33 1 4.1164 -2.1442 0.0102 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738503851.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:39 Heat of formation + Delta-G solvation = -142.265104 kcal Electronic energy + Delta-G solvation = -22487.735827 eV Core-core repulsion = 18814.198956 eV Total energy + Delta-G solvation = -3673.536871 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.99955 -42.06593 -40.73146 -39.37508 -37.39986 -36.77748 -34.60005 -33.71984 -31.74848 -29.93641 -28.96336 -26.75053 -24.03728 -23.54888 -23.20343 -21.27403 -19.46049 -19.34212 -18.78473 -18.31328 -17.69131 -17.43042 -17.20400 -16.86007 -16.71091 -16.27158 -15.72364 -15.52450 -14.86739 -14.62843 -14.44329 -14.34653 -14.26909 -14.04230 -13.82729 -13.29149 -13.03097 -12.84846 -12.70430 -12.63106 -12.41701 -12.32567 -11.99544 -11.78998 -11.23442 -10.75350 -10.10705 -10.01643 -9.71136 -8.61577 -6.29417 -0.26868 0.04335 0.97703 1.10726 1.25376 1.39099 1.49253 1.92222 2.07675 2.32282 2.52966 2.85528 3.07157 3.43409 3.59971 3.69417 3.82557 3.88705 3.97830 4.13802 4.29102 4.53030 4.60034 4.84155 4.92579 4.95680 5.19213 5.22786 5.27405 5.37021 5.47550 5.77194 5.91355 6.27777 6.68992 6.86333 7.02397 7.52224 8.55178 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019632 B = 0.007062 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.926768 B = 3963.789153 C = 4497.236035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.095 4.095 3 C -0.075 4.075 4 C -0.081 4.081 5 C -0.111 4.111 6 C 0.508 3.492 7 O -0.590 6.590 8 N -0.448 5.448 9 C -0.337 4.337 10 H 0.046 0.954 11 C 0.013 3.987 12 N -0.899 5.899 13 Si 0.929 3.071 14 H -0.232 1.232 15 H -0.271 1.271 16 H -0.240 1.240 17 C 0.085 3.915 18 C 0.464 3.536 19 O -0.529 6.529 20 O -0.501 6.501 21 C -0.149 4.149 22 C 0.089 3.911 23 F -0.135 7.135 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.069 0.931 27 H 0.185 0.815 28 H 0.141 0.859 29 H 0.286 0.714 30 H 0.107 0.893 31 H 0.149 0.851 32 H 0.428 0.572 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.098 -0.207 3.949 22.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.092 4.092 4 C -0.100 4.100 5 C -0.115 4.115 6 C 0.299 3.701 7 O -0.474 6.474 8 N -0.169 5.169 9 C -0.464 4.464 10 H 0.064 0.936 11 C -0.191 4.191 12 N -0.535 5.535 13 Si 0.750 3.250 14 H -0.157 1.157 15 H -0.196 1.196 16 H -0.163 1.163 17 C -0.039 4.039 18 C 0.306 3.694 19 O -0.418 6.418 20 O -0.315 6.315 21 C -0.169 4.169 22 C 0.070 3.930 23 F -0.113 7.113 24 H 0.112 0.888 25 H 0.118 0.882 26 H 0.088 0.912 27 H 0.202 0.798 28 H 0.158 0.842 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.166 0.834 32 H 0.290 0.710 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -21.459 0.374 3.584 21.759 hybrid contribution 1.094 -1.145 -0.135 1.589 sum -20.365 -0.770 3.449 20.670 Atomic orbital electron populations 1.20885 0.86920 1.04714 1.04404 1.20516 0.99092 0.90697 0.99333 1.21305 0.91971 0.98907 0.97067 1.21438 0.95273 0.96453 0.96869 1.19787 0.91710 0.95269 1.04715 1.18859 0.87679 0.80681 0.82861 1.90636 1.70859 1.44202 1.41673 1.43224 1.06047 1.29012 1.38575 1.18589 0.79969 1.52504 0.95370 0.93568 1.26245 0.96764 0.94148 1.01932 1.69822 1.12695 1.42196 1.28769 0.86106 0.80061 0.80999 0.77883 1.15746 1.19647 1.16290 1.21899 1.01896 0.84797 0.95343 1.24050 0.74112 0.87480 0.83799 1.90756 1.42384 1.84902 1.23786 1.84481 1.70727 1.22367 1.53906 1.21307 0.93694 0.97886 1.03992 1.17370 0.88458 0.82241 1.04944 1.91483 1.79558 1.46269 1.94032 0.88799 0.88179 0.91213 0.79803 0.84165 0.90450 0.87544 0.83417 0.70971 0.86602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.83 71.24 0.70 -0.66 16 2 C -0.10 -1.91 5.89 -19.76 -0.12 -2.03 16 3 C -0.08 -1.46 9.68 22.23 0.22 -1.24 16 4 C -0.08 -2.35 9.69 22.54 0.22 -2.13 16 5 C -0.11 -4.17 5.06 -20.09 -0.10 -4.27 16 6 C 0.51 25.48 7.22 86.75 0.63 26.11 16 7 O -0.59 -34.58 16.84 -4.01 -0.07 -34.64 16 8 N -0.45 -23.00 1.73 -643.00 -1.11 -24.12 16 9 C -0.34 -20.45 9.24 84.10 0.78 -19.67 16 10 H 0.05 3.33 7.86 -2.91 -0.02 3.30 16 11 C 0.01 0.72 5.37 84.96 0.46 1.17 16 12 N -0.90 -53.55 13.95 21.68 0.30 -53.25 16 13 Si 0.93 39.24 24.85 68.60 1.70 40.95 16 14 H -0.23 -8.50 6.72 99.48 0.67 -7.83 16 15 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 16 H -0.24 -9.45 7.11 99.48 0.71 -8.74 16 17 C 0.09 3.48 4.47 85.63 0.38 3.86 16 18 C 0.46 18.40 5.93 71.23 0.42 18.82 16 19 O -0.53 -25.73 16.88 21.94 0.37 -25.36 16 20 O -0.50 -14.09 13.42 -51.48 -0.69 -14.79 16 21 C -0.15 -4.97 7.43 22.59 0.17 -4.80 16 22 C 0.09 2.37 7.23 22.34 0.16 2.53 16 23 F -0.13 -3.47 16.46 44.97 0.74 -2.73 16 24 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.10 0.74 8.08 -2.39 -0.02 0.72 16 26 H 0.07 0.90 7.63 -2.38 -0.02 0.88 16 27 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 28 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 29 H 0.29 15.33 8.31 -92.71 -0.77 14.56 16 30 H 0.11 4.27 2.78 -2.38 -0.01 4.26 16 31 H 0.15 4.96 5.26 -2.38 -0.01 4.94 16 32 H 0.43 7.90 9.10 -74.06 -0.67 7.23 16 33 H 0.12 4.18 4.31 -2.91 -0.01 4.17 16 Total: -1.00 -82.10 289.69 5.64 -76.47 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.48 Total: 19.78 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 3.91 Total: 17.68 kcal Atomic # 7 Polarization: -76.55 SS G_CDS: -0.81 Total: -77.36 kcal Atomic # 8 Polarization: -74.40 SS G_CDS: -0.39 Total: -74.79 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.74 Total: -2.73 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 1.70 Total: 40.95 kcal Total: -82.10 5.64 -76.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738503851.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.799 kcal (2) G-P(sol) polarization free energy of solvation -82.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds