Wall clock time and date at job start Tue Mar 31 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47042 * 2 1 4 4 N 1.46503 * 109.47113 * 119.99738 * 2 1 3 5 5 C 1.46501 * 119.99653 * 127.26609 * 4 2 1 6 6 C 1.50702 * 109.46995 * 269.99508 * 5 4 2 7 7 H 1.07997 * 119.99621 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99964 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00242 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99996 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47286 * 59.99368 * 10 8 6 12 12 H 1.48494 * 109.47095 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.46621 * 299.99393 * 10 8 6 14 14 C 1.34777 * 120.00048 * 307.26071 * 4 2 1 15 15 O 1.21617 * 119.99933 * 202.94805 * 14 4 2 16 16 C 1.47367 * 119.99922 * 22.95033 * 14 4 2 17 17 C 1.36771 * 122.89596 * 320.82103 * 16 14 4 18 18 S 1.70552 * 110.76059 * 180.23110 * 17 16 14 19 19 C 1.75696 * 91.91342 * 359.65593 * 18 17 16 20 20 C 1.41454 * 125.13085 * 180.08318 * 19 18 17 21 21 O 1.21419 * 119.99650 * 180.29430 * 20 19 18 22 22 C 1.36396 * 109.73338 * 0.34264 * 19 18 17 23 23 H 1.08999 * 109.47169 * 256.34298 * 1 2 3 24 24 H 1.08991 * 109.47407 * 16.34703 * 1 2 3 25 25 H 1.09002 * 109.46825 * 136.34641 * 1 2 3 26 26 H 1.08997 * 109.47403 * 240.00027 * 2 1 3 27 27 H 1.08994 * 109.46916 * 214.70341 * 3 2 1 28 28 H 1.09009 * 109.46644 * 334.70240 * 3 2 1 29 29 H 1.08998 * 109.47312 * 94.69991 * 3 2 1 30 30 H 1.08994 * 109.47248 * 29.99978 * 5 4 2 31 31 H 1.09007 * 109.46723 * 150.00380 * 5 4 2 32 32 H 0.97005 * 120.00377 * 179.97438 * 9 8 6 33 33 H 1.08004 * 124.62180 * 359.96655 * 17 16 14 34 34 H 1.07998 * 119.99718 * 0.30350 * 20 19 18 35 35 H 1.07998 * 123.30653 * 179.77462 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.9868 -1.7823 1.0677 6 6 2.2528 -3.0901 0.9200 7 1 1.1729 -3.1064 0.9213 8 6 2.9598 -4.2658 0.7832 9 7 4.2748 -4.2459 0.7810 10 14 2.0499 -5.8869 0.5994 11 1 1.1942 -5.8396 -0.6134 12 1 3.0316 -6.9935 0.4692 13 1 1.2007 -6.1162 1.7959 14 6 1.5767 -0.3215 2.4149 15 8 2.2424 -0.5664 3.4028 16 6 0.2872 0.3789 2.5504 17 6 -0.1369 1.3322 1.6661 18 16 -1.6636 1.9417 2.1203 19 6 -1.7345 0.8842 3.5215 20 6 -2.8028 0.8299 4.4472 21 8 -2.7519 0.0649 5.3886 22 6 -0.6015 0.1275 3.5852 23 1 -0.3633 -0.2426 0.9986 24 1 -0.3634 0.9860 -0.2892 25 1 -0.3633 -0.7436 -0.7094 26 1 1.8934 -0.5138 -0.8899 27 1 2.9576 1.5035 -0.5851 28 1 1.2850 2.0948 -0.4392 29 1 2.2405 1.7571 1.0242 30 1 3.6096 -1.6139 0.1892 31 1 3.6154 -1.8169 1.9576 32 1 4.7722 -5.0732 0.6852 33 1 0.4211 1.6580 0.8007 34 1 -3.6635 1.4689 4.3164 35 1 -0.4150 -0.5966 4.3644 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754993666.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:39 Heat of formation + Delta-G solvation = 40.878622 kcal Electronic energy + Delta-G solvation = -20177.046873 eV Core-core repulsion = 17077.664887 eV Total energy + Delta-G solvation = -3099.381987 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.87085 -39.08871 -36.89376 -36.19730 -33.31311 -31.69672 -30.16675 -27.47539 -27.10561 -25.70006 -24.28307 -22.21098 -21.93619 -19.65991 -18.34498 -17.77083 -16.53819 -16.36487 -15.99164 -15.42216 -15.04394 -14.67054 -14.56521 -14.23997 -14.04811 -13.84737 -13.37275 -12.98661 -12.43360 -12.29707 -12.05712 -11.83550 -11.58885 -11.31601 -11.23739 -11.11995 -10.91423 -10.63044 -10.44335 -10.17888 -10.02085 -9.72095 -9.19085 -8.70908 -8.48697 -8.27627 -7.72057 -6.09658 -4.15963 0.19616 1.32588 1.65014 1.78004 2.81579 3.28493 3.33492 3.35041 3.48352 3.81840 4.31498 4.40368 4.70773 4.86901 4.99059 5.12839 5.20176 5.24727 5.28091 5.44256 5.59131 5.65634 5.66702 5.80890 6.04852 6.09001 6.21013 6.22669 6.40034 7.01209 7.36482 7.38058 7.49269 7.86992 8.16113 8.30014 8.77627 8.94798 9.49947 10.97896 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.018468 B = 0.005761 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.757866 B = 4858.927134 C = 5581.243682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.134 3.866 3 C -0.183 4.183 4 N -0.595 5.595 5 C 0.247 3.753 6 C -0.535 4.535 7 H 0.058 0.942 8 C 0.064 3.936 9 N -0.892 5.892 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.285 1.285 13 H -0.276 1.276 14 C 0.579 3.421 15 O -0.530 6.530 16 C -0.193 4.193 17 C -0.174 4.174 18 S 0.215 5.785 19 C -0.355 4.355 20 C 0.410 3.590 21 O -0.464 6.464 22 C 0.018 3.982 23 H 0.100 0.900 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.099 0.901 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.048 0.952 32 H 0.265 0.735 33 H 0.215 0.785 34 H 0.098 0.902 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.037 15.579 -3.319 19.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C 0.029 3.971 3 C -0.240 4.240 4 N -0.327 5.327 5 C 0.128 3.872 6 C -0.573 4.573 7 H 0.076 0.924 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.365 3.635 15 O -0.407 6.407 16 C -0.208 4.208 17 C -0.312 4.312 18 S 0.481 5.519 19 C -0.472 4.472 20 C 0.270 3.730 21 O -0.340 6.340 22 C -0.014 4.014 23 H 0.118 0.882 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.118 0.882 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.231 0.769 34 H 0.114 0.886 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -12.425 15.986 -2.918 20.456 hybrid contribution 0.593 -2.075 0.084 2.159 sum -11.832 13.911 -2.834 18.481 Atomic orbital electron populations 1.23871 0.96609 1.01169 1.05258 1.21016 0.93356 0.92269 0.90477 1.22704 1.02030 0.96374 1.02940 1.48093 1.45181 1.35828 1.03550 1.19372 0.87015 0.82163 0.98647 1.21441 0.93401 0.91481 1.51015 0.92387 1.24926 0.94851 0.99136 0.94983 1.69920 1.05520 1.28030 1.49591 0.86569 0.79446 0.82780 0.78723 1.20208 1.21080 1.20111 1.17393 0.83814 0.78440 0.83903 1.90756 1.56695 1.55316 1.37942 1.19406 1.00013 1.03074 0.98332 1.28051 1.01997 0.98557 1.02586 1.82768 1.13389 1.37013 1.18740 1.24186 1.04882 1.10897 1.07213 1.21595 0.87416 0.82218 0.81736 1.90609 1.79824 1.34605 1.28970 1.20876 0.89585 0.95280 0.95625 0.88174 0.91716 0.91776 0.88241 0.91031 0.91490 0.91583 0.94826 0.93426 0.92548 0.76944 0.88581 0.82442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.76 7.74 37.16 0.29 -2.47 16 2 C 0.13 2.06 3.26 -67.93 -0.22 1.84 16 3 C -0.18 -2.14 8.19 37.16 0.30 -1.83 16 4 N -0.59 -12.35 2.40 -168.75 -0.40 -12.75 16 5 C 0.25 6.33 5.27 -5.19 -0.03 6.31 16 6 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16 7 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 10 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.58 12.31 6.35 -12.55 -0.08 12.23 16 15 O -0.53 -13.52 16.66 5.26 0.09 -13.43 16 16 C -0.19 -3.18 3.90 -106.54 -0.42 -3.60 16 17 C -0.17 -2.09 5.37 30.20 0.16 -1.93 16 18 S 0.22 1.96 23.02 -107.50 -2.47 -0.51 16 19 C -0.35 -4.46 6.22 -39.02 -0.24 -4.70 16 20 C 0.41 4.81 11.46 31.96 0.37 5.18 16 21 O -0.46 -7.45 17.51 5.44 0.10 -7.36 16 22 C 0.02 0.30 9.65 -40.08 -0.39 -0.09 16 23 H 0.10 1.50 3.62 -67.19 -0.24 1.25 16 24 H 0.06 0.60 5.54 -51.93 -0.29 0.31 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.10 1.57 7.86 -51.93 -0.41 1.16 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.54 6.47 -51.92 -0.34 0.21 16 29 H 0.07 0.86 6.54 -51.93 -0.34 0.52 16 30 H 0.03 0.87 7.99 -51.93 -0.41 0.45 16 31 H 0.05 1.39 7.29 -51.92 -0.38 1.01 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.21 2.22 1.67 -52.49 -0.09 2.13 16 34 H 0.10 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.16 2.80 8.00 -52.49 -0.42 2.38 16 LS Contribution 301.42 15.07 4.54 4.54 Total: -1.00 -34.06 301.42 -6.84 -40.90 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -3.73 Total: -0.03 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -0.67 Total: -2.55 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.33 Total: -38.19 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.18 Total: -20.79 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.47 Total: -0.51 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.06 -6.84 -40.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754993666.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.781 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds