Wall clock time and date at job start Tue Mar 31 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47042 * 2 1 4 4 N 1.46503 * 109.47113 * 119.99738 * 2 1 3 5 5 C 1.46501 * 119.99653 * 127.26609 * 4 2 1 6 6 C 1.50702 * 109.46995 * 269.99508 * 5 4 2 7 7 H 1.07997 * 119.99621 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99964 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00242 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99996 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47286 * 59.99368 * 10 8 6 12 12 H 1.48494 * 109.47095 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.46621 * 299.99393 * 10 8 6 14 14 C 1.34777 * 120.00048 * 307.26071 * 4 2 1 15 15 O 1.21617 * 119.99933 * 202.94805 * 14 4 2 16 16 C 1.47367 * 119.99922 * 22.95033 * 14 4 2 17 17 C 1.36771 * 122.89596 * 320.82103 * 16 14 4 18 18 S 1.70552 * 110.76059 * 180.23110 * 17 16 14 19 19 C 1.75696 * 91.91342 * 359.65593 * 18 17 16 20 20 C 1.41454 * 125.13085 * 180.08318 * 19 18 17 21 21 O 1.21419 * 119.99650 * 180.29430 * 20 19 18 22 22 C 1.36396 * 109.73338 * 0.34264 * 19 18 17 23 23 H 1.08999 * 109.47169 * 256.34298 * 1 2 3 24 24 H 1.08991 * 109.47407 * 16.34703 * 1 2 3 25 25 H 1.09002 * 109.46825 * 136.34641 * 1 2 3 26 26 H 1.08997 * 109.47403 * 240.00027 * 2 1 3 27 27 H 1.08994 * 109.46916 * 214.70341 * 3 2 1 28 28 H 1.09009 * 109.46644 * 334.70240 * 3 2 1 29 29 H 1.08998 * 109.47312 * 94.69991 * 3 2 1 30 30 H 1.08994 * 109.47248 * 29.99978 * 5 4 2 31 31 H 1.09007 * 109.46723 * 150.00380 * 5 4 2 32 32 H 0.97005 * 120.00377 * 179.97438 * 9 8 6 33 33 H 1.08004 * 124.62180 * 359.96655 * 17 16 14 34 34 H 1.07998 * 119.99718 * 0.30350 * 20 19 18 35 35 H 1.07998 * 123.30653 * 179.77462 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.9868 -1.7823 1.0677 6 6 2.2528 -3.0901 0.9200 7 1 1.1729 -3.1064 0.9213 8 6 2.9598 -4.2658 0.7832 9 7 4.2748 -4.2459 0.7810 10 14 2.0499 -5.8869 0.5994 11 1 1.1942 -5.8396 -0.6134 12 1 3.0316 -6.9935 0.4692 13 1 1.2007 -6.1162 1.7959 14 6 1.5767 -0.3215 2.4149 15 8 2.2424 -0.5664 3.4028 16 6 0.2872 0.3789 2.5504 17 6 -0.1369 1.3322 1.6661 18 16 -1.6636 1.9417 2.1203 19 6 -1.7345 0.8842 3.5215 20 6 -2.8028 0.8299 4.4472 21 8 -2.7519 0.0649 5.3886 22 6 -0.6015 0.1275 3.5852 23 1 -0.3633 -0.2426 0.9986 24 1 -0.3634 0.9860 -0.2892 25 1 -0.3633 -0.7436 -0.7094 26 1 1.8934 -0.5138 -0.8899 27 1 2.9576 1.5035 -0.5851 28 1 1.2850 2.0948 -0.4392 29 1 2.2405 1.7571 1.0242 30 1 3.6096 -1.6139 0.1892 31 1 3.6154 -1.8169 1.9576 32 1 4.7722 -5.0732 0.6852 33 1 0.4211 1.6580 0.8007 34 1 -3.6635 1.4689 4.3164 35 1 -0.4150 -0.5966 4.3644 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754993666.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:39 Heat of formation + Delta-G solvation = 16.712833 kcal Electronic energy + Delta-G solvation = -20178.094780 eV Core-core repulsion = 17077.664887 eV Total energy + Delta-G solvation = -3100.429894 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.18314 -40.16710 -38.39962 -37.54011 -35.26466 -33.38680 -31.29192 -29.38003 -28.17592 -26.78664 -25.94807 -23.88763 -23.17517 -20.79610 -19.46744 -18.99955 -18.68586 -17.71646 -17.31798 -16.75090 -16.45363 -16.16484 -15.82490 -15.72054 -15.27205 -15.06398 -14.70083 -14.22674 -14.15047 -13.68511 -13.52952 -13.23747 -13.14364 -12.85200 -12.68219 -12.44724 -12.25580 -12.22624 -12.08475 -11.74759 -11.53732 -11.06422 -10.79863 -10.69232 -9.61764 -9.48334 -9.28736 -8.27045 -6.43492 -0.79704 0.43373 0.57995 0.66120 1.32777 1.37103 1.44423 1.71449 2.02132 2.31381 2.39368 3.02002 3.45480 3.67916 3.80822 3.83491 4.05723 4.12715 4.29879 4.31893 4.58799 4.61932 4.72529 4.77466 4.88895 4.95949 4.99778 5.12450 5.14289 5.21618 5.40639 5.53924 5.83317 6.00369 6.49155 6.63415 6.70099 7.17567 7.33189 8.79485 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.018468 B = 0.005761 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.757866 B = 4858.927134 C = 5581.243682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.120 3.880 3 C -0.179 4.179 4 N -0.600 5.600 5 C 0.262 3.738 6 C -0.549 4.549 7 H 0.054 0.946 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.966 3.034 11 H -0.257 1.257 12 H -0.276 1.276 13 H -0.280 1.280 14 C 0.570 3.430 15 O -0.598 6.598 16 C -0.225 4.225 17 C -0.172 4.172 18 S 0.384 5.616 19 C -0.372 4.372 20 C 0.414 3.586 21 O -0.517 6.517 22 C -0.020 4.020 23 H 0.083 0.917 24 H 0.117 0.883 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.121 0.879 29 H 0.051 0.949 30 H 0.026 0.974 31 H -0.004 1.004 32 H 0.268 0.732 33 H 0.234 0.766 34 H 0.162 0.838 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.855 18.418 -5.938 25.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C 0.017 3.983 3 C -0.236 4.236 4 N -0.331 5.331 5 C 0.141 3.859 6 C -0.587 4.587 7 H 0.073 0.927 8 C -0.189 4.189 9 N -0.565 5.565 10 Si 0.790 3.210 11 H -0.182 1.182 12 H -0.201 1.201 13 H -0.206 1.206 14 C 0.359 3.641 15 O -0.480 6.480 16 C -0.239 4.239 17 C -0.311 4.311 18 S 0.651 5.349 19 C -0.489 4.489 20 C 0.277 3.723 21 O -0.396 6.396 22 C -0.053 4.053 23 H 0.101 0.899 24 H 0.135 0.865 25 H 0.082 0.918 26 H 0.107 0.893 27 H 0.092 0.908 28 H 0.139 0.861 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.014 0.986 32 H 0.077 0.923 33 H 0.249 0.751 34 H 0.178 0.822 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.277 18.869 -5.594 25.540 hybrid contribution 1.725 -2.815 0.838 3.406 sum -14.553 16.055 -4.756 22.185 Atomic orbital electron populations 1.23865 0.94293 1.04217 1.04315 1.21444 0.95470 0.93843 0.87552 1.22680 1.03898 0.94318 1.02672 1.48079 1.44419 1.34914 1.05691 1.18806 0.87591 0.83889 0.95661 1.21696 0.93307 0.92680 1.51057 0.92744 1.25851 0.95692 1.02927 0.94411 1.70045 1.07068 1.29153 1.50236 0.85492 0.78346 0.78151 0.78995 1.18169 1.20120 1.20588 1.18224 0.85137 0.77873 0.82883 1.90691 1.58920 1.58449 1.39959 1.18802 0.98155 1.05817 1.01137 1.28279 1.04350 0.96658 1.01798 1.82176 1.08177 1.31392 1.13172 1.24618 1.03712 1.11022 1.09535 1.22557 0.88205 0.81488 0.80002 1.90607 1.80781 1.37018 1.31160 1.20604 0.92022 0.96950 0.95684 0.89853 0.86466 0.91832 0.89251 0.90764 0.86079 0.92986 0.95571 0.98573 0.92262 0.75089 0.82163 0.86758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.81 7.74 71.98 0.56 -4.25 16 2 C 0.12 3.59 3.26 44.99 0.15 3.73 16 3 C -0.18 -3.70 8.19 71.98 0.59 -3.11 16 4 N -0.60 -26.41 2.40 -806.04 -1.93 -28.34 16 5 C 0.26 14.53 5.27 85.63 0.45 14.98 16 6 C -0.55 -32.11 9.39 25.60 0.24 -31.87 16 7 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 8 C 0.01 0.62 5.46 84.65 0.46 1.09 16 9 N -0.93 -56.64 13.29 21.44 0.28 -56.35 16 10 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 11 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 14 C 0.57 26.12 6.35 86.65 0.55 26.67 16 15 O -0.60 -33.98 16.66 -4.08 -0.07 -34.05 16 16 C -0.23 -7.53 3.90 -21.11 -0.08 -7.61 16 17 C -0.17 -3.52 5.37 67.48 0.36 -3.16 16 18 S 0.38 4.62 23.02 -56.49 -1.30 3.32 16 19 C -0.37 -8.48 6.22 22.63 0.14 -8.34 16 20 C 0.41 8.62 11.46 68.61 0.79 9.41 16 21 O -0.52 -16.65 17.51 -3.46 -0.06 -16.71 16 22 C -0.02 -0.69 9.65 21.95 0.21 -0.47 16 23 H 0.08 2.32 3.62 -16.72 -0.06 2.26 16 24 H 0.12 1.39 5.54 -2.39 -0.01 1.37 16 25 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.09 2.81 7.86 -2.39 -0.02 2.79 16 27 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.12 1.19 6.47 -2.38 -0.02 1.17 16 29 H 0.05 1.27 6.54 -2.39 -0.02 1.25 16 30 H 0.03 1.46 7.99 -2.39 -0.02 1.44 16 31 H 0.00 -0.25 7.29 -2.38 -0.02 -0.27 16 32 H 0.27 15.40 8.31 -92.70 -0.77 14.62 16 33 H 0.23 3.65 1.67 -2.92 0.00 3.64 16 34 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 35 H 0.11 4.67 8.00 -2.91 -0.02 4.65 16 Total: -1.00 -86.68 301.42 4.44 -82.24 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: 1.08 Total: 5.41 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 4.42 Total: -2.94 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -1.65 Total: -84.70 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: -0.13 Total: -50.76 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 16 Polarization: 4.62 SS G_CDS: -1.30 Total: 3.32 kcal Total: -86.68 4.44 -82.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754993666.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.949 kcal (2) G-P(sol) polarization free energy of solvation -86.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds