Wall clock time and date at job start Tue Mar 31 2020 05:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47193 * 2 1 4 4 C 1.53007 * 109.46970 * 240.00110 * 2 1 3 5 5 S 1.81390 * 109.47166 * 120.00416 * 2 1 3 6 6 C 1.76197 * 103.00231 * 59.99638 * 5 2 1 7 7 C 1.39162 * 119.64950 * 180.02562 * 6 5 2 8 8 C 1.39568 * 118.91337 * 180.27985 * 7 6 5 9 9 C 1.47975 * 120.88233 * 179.70177 * 8 7 6 10 10 O 1.21470 * 120.00529 * 0.02562 * 9 8 7 11 11 O 1.34688 * 119.99980 * 179.97438 * 9 8 7 12 12 C 1.34824 * 117.00168 * 180.02562 * 11 9 8 13 13 H 1.08002 * 120.00223 * 0.02562 * 12 11 9 14 14 C 1.38852 * 119.99887 * 179.97438 * 12 11 9 15 15 N 1.31389 * 120.00004 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00049 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47263 * 89.99699 * 16 14 12 18 18 H 1.48503 * 109.46705 * 209.99914 * 16 14 12 19 19 H 1.48496 * 109.46923 * 329.99360 * 16 14 12 20 20 C 1.40137 * 118.22724 * 359.43642 * 8 7 6 21 21 C 1.37921 * 119.17469 * 0.56590 * 20 8 7 22 22 N 1.31921 * 121.01760 * 359.69815 * 21 20 8 23 23 H 1.09001 * 109.47050 * 299.99930 * 1 2 3 24 24 H 1.08998 * 109.47092 * 59.99627 * 1 2 3 25 25 H 1.08999 * 109.47406 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47278 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47406 * 300.00180 * 3 2 1 28 28 H 1.09001 * 109.47066 * 60.00079 * 3 2 1 29 29 H 1.08999 * 109.47265 * 300.00342 * 4 2 1 30 30 H 1.08998 * 109.46999 * 60.00206 * 4 2 1 31 31 H 1.08996 * 109.46768 * 179.97438 * 4 2 1 32 32 H 1.08002 * 120.53816 * 359.97438 * 7 6 5 33 33 H 0.96998 * 120.00389 * 179.97438 * 15 14 12 34 34 H 1.07998 * 120.41387 * 180.28464 * 20 8 7 35 35 H 1.07998 * 119.49292 * 179.72527 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 16 2.1347 -0.8552 1.4810 6 6 1.4574 -2.4727 1.3090 7 6 1.7135 -3.4333 2.2828 8 6 1.1742 -4.7113 2.1281 9 6 1.4241 -5.7679 3.1336 10 8 2.1062 -5.5284 4.1098 11 8 0.8945 -6.9950 2.9668 12 6 1.1603 -7.9111 3.9197 13 1 1.7732 -7.6453 4.7683 14 6 0.6453 -9.1959 3.8104 15 7 0.9047 -10.0888 4.7387 16 14 -0.4154 -9.6553 2.3430 17 1 0.4474 -10.1759 1.2522 18 1 -1.3903 -10.7010 2.7450 19 1 -1.1466 -8.4543 1.8655 20 6 0.3852 -4.9655 0.9983 21 6 0.1804 -3.9567 0.0804 22 7 0.7100 -2.7611 0.2549 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1301 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2494 30 1 1.6767 -0.2074 -2.1393 31 1 3.1300 -0.7208 -1.2495 32 1 2.3236 -3.1952 3.1415 33 1 0.5446 -10.9862 4.6627 34 1 -0.0533 -5.9406 0.8458 35 1 -0.4231 -4.1482 -0.7945 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778861213.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:43 Heat of formation + Delta-G solvation = -45.619968 kcal Electronic energy + Delta-G solvation = -19213.501559 eV Core-core repulsion = 16110.368712 eV Total energy + Delta-G solvation = -3103.132847 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.19581 -38.91078 -36.39899 -35.54313 -32.68988 -32.32999 -31.24482 -27.54325 -27.41024 -26.27361 -24.18052 -23.52552 -20.79965 -20.58568 -18.25433 -18.02900 -16.66443 -16.10333 -15.84841 -15.31680 -15.00608 -14.83960 -14.39435 -14.27584 -14.10813 -14.00645 -13.64172 -12.76882 -12.58588 -12.50407 -12.40749 -12.13933 -11.78004 -11.47431 -11.45560 -11.23167 -11.22868 -10.69059 -10.54420 -10.11224 -9.89242 -9.87414 -9.66610 -9.60085 -9.25883 -8.84376 -7.57283 -6.55354 -4.25964 0.82650 1.08191 1.40458 2.15008 3.04922 3.13651 3.22915 3.27229 3.82083 3.99700 4.10040 4.55932 4.58726 4.59511 4.94206 4.97990 5.04307 5.15154 5.26016 5.34303 5.42251 5.55956 5.58335 5.65635 5.69230 5.73553 5.78167 5.84070 6.17558 6.20795 6.25454 6.42280 6.63345 7.53806 7.69479 7.85912 8.44693 8.80967 9.47903 10.51820 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.038387 B = 0.003923 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.247049 B = 7135.108690 C = 7673.267843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.038 4.038 3 C -0.132 4.132 4 C -0.149 4.149 5 S -0.075 6.075 6 C 0.115 3.885 7 C -0.101 4.101 8 C -0.023 4.023 9 C 0.437 3.563 10 O -0.528 6.528 11 O -0.235 6.235 12 C -0.374 4.374 13 H 0.114 0.886 14 C 0.067 3.933 15 N -0.860 5.860 16 Si 0.906 3.094 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.258 1.258 20 C -0.138 4.138 21 C 0.101 3.899 22 N -0.477 5.477 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.150 0.850 33 H 0.283 0.717 34 H 0.149 0.851 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.885 17.656 -13.104 22.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.190 4.190 4 C -0.208 4.208 5 S 0.166 5.834 6 C -0.133 4.133 7 C -0.127 4.127 8 C -0.034 4.034 9 C 0.284 3.716 10 O -0.424 6.424 11 O -0.143 6.143 12 C -0.449 4.449 13 H 0.131 0.869 14 C -0.139 4.139 15 N -0.498 5.498 16 Si 0.731 3.269 17 H -0.195 1.195 18 H -0.204 1.204 19 H -0.182 1.182 20 C -0.161 4.161 21 C -0.058 4.058 22 N -0.192 5.192 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.105 0.895 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.168 0.832 33 H 0.094 0.906 34 H 0.167 0.833 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.180 18.663 -12.531 22.510 hybrid contribution -1.053 -1.661 -0.782 2.116 sum -2.233 17.001 -13.312 21.708 Atomic orbital electron populations 1.22229 0.92107 1.04756 1.01684 1.22757 0.99439 0.97366 0.95288 1.21728 1.01651 0.92861 1.02809 1.22229 1.00917 1.02683 0.94946 1.85518 1.64483 1.01541 1.31870 1.22726 0.98710 0.98288 0.93550 1.21712 1.00089 0.91244 0.99657 1.19614 0.96785 0.92665 0.94290 1.20245 0.82401 0.82898 0.86051 1.90689 1.39290 1.81490 1.30951 1.83488 1.63372 1.19301 1.48094 1.20777 1.32817 0.89216 1.02075 0.86893 1.24614 0.96987 0.94042 0.98224 1.69571 1.42552 1.04655 1.33007 0.86203 0.80160 0.78996 0.81585 1.19535 1.20436 1.18177 1.22471 0.98093 1.01701 0.93830 1.22652 0.96808 0.87788 0.98515 1.67780 1.09625 1.21504 1.20259 0.92452 0.92282 0.89453 0.91771 0.90916 0.91770 0.89446 0.92284 0.92454 0.83242 0.90599 0.83307 0.82012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.27 37.16 0.31 -1.20 16 2 C -0.04 -0.39 0.86 -90.62 -0.08 -0.47 16 3 C -0.13 -1.06 8.48 37.15 0.32 -0.75 16 4 C -0.15 -1.51 8.27 37.16 0.31 -1.20 16 5 S -0.08 -0.96 20.85 -107.50 -2.24 -3.20 16 6 C 0.12 1.72 6.67 -16.96 -0.11 1.61 16 7 C -0.10 -1.74 9.41 -38.74 -0.36 -2.10 16 8 C -0.02 -0.43 5.90 -104.70 -0.62 -1.05 16 9 C 0.44 10.48 7.86 34.72 0.27 10.76 16 10 O -0.53 -14.17 15.68 -19.24 -0.30 -14.47 16 11 O -0.23 -6.06 7.92 -21.43 -0.17 -6.23 16 12 C -0.37 -10.81 10.11 30.96 0.31 -10.50 16 13 H 0.11 3.61 7.09 -52.49 -0.37 3.24 16 14 C 0.07 1.85 5.50 -17.51 -0.10 1.76 16 15 N -0.86 -24.58 13.95 55.49 0.77 -23.81 16 16 Si 0.91 20.35 28.62 -169.99 -4.86 15.48 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 20 C -0.14 -2.17 9.70 -38.99 -0.38 -2.55 16 21 C 0.10 1.32 11.16 -17.63 -0.20 1.12 16 22 N -0.48 -6.57 4.61 -12.17 -0.06 -6.62 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.09 1.03 5.43 -51.93 -0.28 0.74 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 1.03 5.43 -51.93 -0.28 0.74 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.15 2.59 7.74 -52.49 -0.41 2.19 16 33 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.15 2.26 7.71 -52.49 -0.40 1.86 16 35 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 311.91 15.07 4.70 4.70 Total: -1.00 -30.73 311.91 -6.75 -37.48 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -4.26 Total: 1.24 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -0.33 Total: -4.57 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: 0.72 Total: -30.43 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.47 Total: -20.70 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.86 Total: 15.48 kcal Atomic # 16 Polarization: -0.96 SS G_CDS: -2.24 Total: -3.20 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.73 -6.75 -37.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778861213.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.138 kcal (2) G-P(sol) polarization free energy of solvation -30.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds