Wall clock time and date at job start Tue Mar 31 2020 05:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38168 * 119.54921 * 2 1 4 4 C 1.39841 * 118.99652 * 180.02562 * 3 2 1 5 5 C 1.48051 * 120.92775 * 180.02562 * 4 3 2 6 6 O 1.21427 * 120.00133 * 359.97438 * 5 4 3 7 7 O 1.34679 * 119.99774 * 179.97438 * 5 4 3 8 8 C 1.45198 * 116.99756 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46922 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.46889 * 180.02562 * 9 8 7 11 11 S 1.81004 * 109.46969 * 179.97438 * 10 9 8 12 12 C 1.76201 * 99.99981 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99934 * 0.02562 * 12 11 10 14 14 C 1.38798 * 119.99700 * 180.02562 * 12 11 10 15 15 N 1.31625 * 120.00057 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99583 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46820 * 90.00169 * 16 14 12 18 18 H 1.48496 * 109.46904 * 209.99784 * 16 14 12 19 19 H 1.48492 * 109.47141 * 329.99916 * 16 14 12 20 20 C 1.39880 * 118.14254 * 0.02562 * 4 3 2 21 21 C 1.38119 * 119.00001 * 359.97438 * 20 4 3 22 22 N 1.31799 * 119.55404 * 180.02562 * 2 1 3 23 23 H 1.09005 * 109.46803 * 269.97500 * 1 2 3 24 24 H 1.08996 * 109.47268 * 29.97944 * 1 2 3 25 25 H 1.08996 * 109.46888 * 149.98053 * 1 2 3 26 26 H 1.07997 * 120.50513 * 359.97438 * 3 2 1 27 27 H 1.08999 * 109.46887 * 300.00249 * 8 7 5 28 28 H 1.08993 * 109.47344 * 60.00286 * 8 7 5 29 29 H 1.09004 * 109.47016 * 300.00030 * 9 8 7 30 30 H 1.09001 * 109.47219 * 59.99984 * 9 8 7 31 31 H 1.08999 * 109.46814 * 299.99584 * 10 9 8 32 32 H 1.08993 * 109.47450 * 59.99641 * 10 9 8 33 33 H 0.97008 * 119.99862 * 179.97438 * 15 14 12 34 34 H 1.08004 * 120.50002 * 180.02562 * 20 4 3 35 35 H 1.08000 * 119.55376 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2020 0.0000 4 6 3.5868 1.1885 -0.0005 5 6 4.3599 2.4511 0.0000 6 8 3.7801 3.5180 0.0005 7 8 5.7062 2.4162 0.0000 8 6 6.3986 3.6925 0.0011 9 6 7.9098 3.4529 0.0003 10 6 8.6393 4.7977 0.0021 11 16 10.4270 4.5142 0.0019 12 6 11.0010 6.1801 0.0033 13 1 10.2926 6.9953 0.0045 14 6 12.3635 6.4447 0.0030 15 7 13.2269 5.4511 0.0022 16 14 12.9720 8.2109 0.0053 17 1 13.1339 8.6767 1.4061 18 1 14.2792 8.2849 -0.6952 19 1 11.9866 9.0748 -0.6929 20 6 4.2346 -0.0513 -0.0016 21 6 3.4741 -1.2042 -0.0016 22 7 2.1571 -1.1465 -0.0005 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6493 2.1378 -0.0004 27 1 6.1202 4.2576 -0.8884 28 1 6.1203 4.2561 0.8915 29 1 8.1885 2.8875 0.8896 30 1 8.1878 2.8894 -0.8904 31 1 8.3607 5.3634 -0.8870 32 1 8.3612 5.3607 0.8929 33 1 14.1791 5.6360 0.0016 34 1 5.3132 -0.1061 -0.0017 35 1 3.9650 -2.1662 -0.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805545507.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:39 Heat of formation + Delta-G solvation = -69.688565 kcal Electronic energy + Delta-G solvation = -17977.491578 eV Core-core repulsion = 14873.315038 eV Total energy + Delta-G solvation = -3104.176540 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.10091 -39.95993 -36.86667 -33.90429 -33.30043 -32.81666 -32.47104 -28.08158 -27.10425 -25.63508 -24.74099 -23.20911 -21.44302 -21.02465 -18.26148 -17.45956 -17.36298 -16.75849 -16.38078 -16.04893 -15.20957 -15.04514 -14.84414 -14.57473 -14.32306 -13.81263 -13.40558 -13.03817 -12.83734 -12.74209 -12.68730 -12.19820 -12.08711 -11.42107 -11.21585 -11.06263 -11.04357 -10.88247 -10.68993 -10.41873 -10.31531 -9.98733 -9.67307 -9.40379 -9.10482 -8.39749 -6.60063 -6.27641 -3.99021 0.19477 0.64542 2.27248 2.29025 3.18947 3.19811 3.26835 3.36442 3.48761 3.83654 4.16809 4.20440 4.33802 4.53249 4.60886 5.02325 5.02886 5.07091 5.09061 5.09682 5.18078 5.25097 5.33021 5.39351 5.47511 5.60429 5.64276 5.70859 5.83824 6.06468 6.17101 6.27966 6.38738 6.60346 7.46166 7.48627 7.56309 8.31957 9.18806 10.80468 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.054956 B = 0.002377 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.377866 B =11775.943453 C =12254.270851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.120 3.880 3 C -0.112 4.112 4 C -0.071 4.071 5 C 0.507 3.493 6 O -0.498 6.498 7 O -0.347 6.347 8 C 0.073 3.927 9 C -0.098 4.098 10 C -0.115 4.115 11 S -0.123 6.123 12 C -0.519 4.519 13 H 0.074 0.926 14 C 0.071 3.929 15 N -0.869 5.869 16 Si 0.920 3.080 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.272 1.272 20 C -0.123 4.123 21 C 0.098 3.902 22 N -0.466 5.466 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.149 0.851 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.268 0.732 34 H 0.155 0.845 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.886 -11.549 0.003 24.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.017 4.017 3 C -0.132 4.132 4 C -0.080 4.080 5 C 0.350 3.650 6 O -0.386 6.386 7 O -0.263 6.263 8 C -0.002 4.002 9 C -0.136 4.136 10 C -0.263 4.263 11 S 0.105 5.895 12 C -0.667 4.667 13 H 0.092 0.908 14 C -0.138 4.138 15 N -0.504 5.504 16 Si 0.746 3.254 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.197 1.197 20 C -0.143 4.143 21 C -0.059 4.059 22 N -0.176 5.176 23 H 0.100 0.900 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.167 0.833 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.172 0.828 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -21.688 -12.969 -0.003 25.269 hybrid contribution 0.383 3.242 0.021 3.264 sum -21.305 -9.727 0.018 23.421 Atomic orbital electron populations 1.20743 0.88005 1.03883 1.03493 1.21302 0.97454 0.87532 0.95427 1.22143 0.92749 1.00510 0.97833 1.19558 0.93384 0.91771 1.03259 1.21003 0.81761 0.88881 0.73326 1.90843 1.71223 1.31570 1.44988 1.86506 1.18922 1.37615 1.83262 1.23372 0.92403 0.81505 1.02884 1.21299 0.89560 0.98339 1.04429 1.23179 1.02061 0.97702 1.03400 1.84655 0.93926 1.14027 1.96891 1.22690 0.94365 0.90859 1.58767 0.90824 1.25024 0.95730 0.98532 0.94502 1.70015 1.02282 1.31089 1.47060 0.86140 0.78194 0.82647 0.78406 1.20226 1.20718 1.19656 1.22589 1.02831 0.91910 0.96987 1.22845 0.88951 0.98721 0.95342 1.67404 1.10498 1.29483 1.10241 0.90045 0.90344 0.90089 0.83296 0.90862 0.90858 0.90238 0.90231 0.91682 0.91686 0.92222 0.82773 0.81565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.59 10.17 36.01 0.37 -0.22 16 2 C 0.12 1.06 6.78 -82.63 -0.56 0.50 16 3 C -0.11 -1.07 9.31 -39.01 -0.36 -1.43 16 4 C -0.07 -0.76 5.91 -104.66 -0.62 -1.38 16 5 C 0.51 6.63 7.92 34.76 0.28 6.90 16 6 O -0.50 -7.60 16.23 -19.21 -0.31 -7.92 16 7 O -0.35 -4.61 9.58 -40.43 -0.39 -5.00 16 8 C 0.07 1.02 5.47 37.16 0.20 1.22 16 9 C -0.10 -1.53 5.60 -26.73 -0.15 -1.68 16 10 C -0.11 -2.24 5.67 37.16 0.21 -2.03 16 11 S -0.12 -3.15 21.44 -107.50 -2.30 -5.46 16 12 C -0.52 -14.67 9.50 30.94 0.29 -14.37 16 13 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 14 C 0.07 2.00 5.49 -17.43 -0.10 1.91 16 15 N -0.87 -25.66 13.22 55.49 0.73 -24.92 16 16 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 C -0.12 -1.10 9.71 -39.01 -0.38 -1.47 16 21 C 0.10 0.80 11.17 -17.60 -0.20 0.61 16 22 N -0.47 -4.47 10.24 -9.53 -0.10 -4.57 16 23 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.15 1.28 7.74 -52.49 -0.41 0.87 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 32 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 33 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 34 H 0.15 1.17 7.71 -52.48 -0.40 0.77 16 35 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 327.12 15.07 4.93 4.93 Total: -1.00 -32.66 327.12 -8.05 -40.71 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -4.58 Total: -2.64 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -1.01 Total: -11.45 kcal Atomic # 7 Polarization: -30.13 SS G_CDS: 0.64 Total: -29.49 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.70 Total: -12.91 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.30 Total: -5.46 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.66 -8.05 -40.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805545507.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.975 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds