Wall clock time and date at job start Tue Mar 31 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 O 1.45207 * 109.46851 * 65.00566 * 4 2 1 6 6 C 1.34222 * 116.99768 * 180.02562 * 5 4 2 7 7 O 1.20828 * 120.00264 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99847 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47299 * 179.97438 * 8 6 5 10 10 C 1.76196 * 100.00349 * 179.97438 * 9 8 6 11 11 H 1.08000 * 119.99412 * 0.02562 * 10 9 8 12 12 C 1.38800 * 120.00150 * 179.97438 * 10 9 8 13 13 N 1.31634 * 119.99864 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99991 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.46774 * 90.00113 * 14 12 10 16 16 H 1.48494 * 109.47071 * 209.99791 * 14 12 10 17 17 H 1.48500 * 109.47236 * 329.99961 * 14 12 10 18 18 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 19 19 C 1.38228 * 119.61521 * 35.00175 * 18 2 1 20 20 C 1.38636 * 119.15764 * 179.97438 * 19 18 2 21 21 C 1.38669 * 118.42252 * 359.97438 * 20 19 18 22 22 C 1.38191 * 119.16134 * 0.02562 * 21 20 19 23 23 N 1.31849 * 119.61762 * 214.72709 * 18 2 1 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 28 28 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 29 29 H 1.09000 * 109.46744 * 299.99134 * 8 6 5 30 30 H 1.08999 * 109.47758 * 59.99572 * 8 6 5 31 31 H 0.97001 * 119.99713 * 180.02562 * 13 12 10 32 32 H 1.07998 * 120.42322 * 359.97438 * 19 18 2 33 33 H 1.07995 * 120.78330 * 180.02562 * 20 19 18 34 34 H 1.07992 * 120.41839 * 180.02562 * 21 20 19 35 35 H 1.08000 * 119.61700 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 1.6560 0.0286 -2.4318 6 6 2.0291 -0.4733 -3.6194 7 8 2.6562 -1.5049 -3.6692 8 6 1.6668 0.2504 -4.8907 9 16 2.3069 -0.6695 -6.3120 10 6 1.7550 0.3702 -7.6232 11 1 1.1987 1.2691 -7.4018 12 6 2.0362 0.0346 -8.9403 13 7 1.6243 0.8116 -9.9198 14 14 2.9990 -1.5197 -9.3230 15 1 2.0576 -2.6552 -9.4954 16 1 3.7750 -1.3258 -10.5741 17 1 3.9296 -1.8137 -8.2037 18 6 2.0323 -0.7104 1.2305 19 6 1.3319 -1.7934 1.7278 20 6 1.8028 -2.4402 2.8599 21 6 2.9660 -1.9718 3.4519 22 6 3.6124 -0.8832 2.8979 23 7 3.1377 -0.2951 1.8171 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1264 -0.7995 -1.2055 28 1 1.6055 -1.7198 -1.2951 29 1 0.5823 0.3295 -4.9672 30 1 2.1039 1.2488 -4.8777 31 1 1.8205 0.5769 -10.8403 32 1 0.4293 -2.1314 1.2405 33 1 1.2767 -3.2893 3.2705 34 1 3.3618 -2.4517 4.3347 35 1 4.5191 -0.5125 3.3528 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821485504.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:08 Heat of formation + Delta-G solvation = -60.337959 kcal Electronic energy + Delta-G solvation = -18468.950418 eV Core-core repulsion = 15365.179351 eV Total energy + Delta-G solvation = -3103.771067 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.74822 -40.02721 -36.73841 -34.91638 -32.82470 -32.48641 -30.46674 -29.70720 -26.90893 -25.66942 -24.27620 -23.71010 -21.22132 -20.72131 -18.00965 -17.38619 -17.08304 -16.76973 -16.29849 -15.93926 -15.56222 -15.02430 -14.42791 -14.34984 -14.23364 -13.93278 -13.41110 -13.34703 -12.88027 -12.70717 -12.51922 -12.14826 -11.72225 -11.58782 -11.34888 -11.23724 -11.04821 -10.73346 -10.48359 -10.23101 -10.17310 -9.87286 -9.74915 -9.34222 -9.05026 -8.60672 -7.01654 -6.33029 -4.07140 0.71573 0.92886 2.41593 2.55406 3.07365 3.29581 3.44071 3.46306 3.53684 3.92007 4.28482 4.33065 4.49875 4.61375 4.67670 4.75042 4.75102 4.83981 4.96899 5.05770 5.14182 5.26642 5.34315 5.42841 5.51974 5.60426 5.67294 5.69735 5.80929 5.93190 5.96914 6.02286 6.33557 6.59880 7.65849 7.89897 8.05618 8.38639 9.12131 10.76000 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.043090 B = 0.002900 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.652414 B = 9652.681838 C = 9926.152954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.042 4.042 3 H 0.103 0.897 4 C 0.079 3.921 5 O -0.355 6.355 6 C 0.479 3.521 7 O -0.490 6.490 8 C -0.099 4.099 9 S -0.141 6.141 10 C -0.522 4.522 11 H 0.092 0.908 12 C 0.097 3.903 13 N -0.877 5.877 14 Si 0.856 3.144 15 H -0.266 1.266 16 H -0.273 1.273 17 H -0.235 1.235 18 C 0.137 3.863 19 C -0.165 4.165 20 C -0.074 4.074 21 C -0.177 4.177 22 C 0.101 3.899 23 N -0.479 5.479 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.272 0.728 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.145 -4.168 26.482 26.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.061 4.061 3 H 0.122 0.878 4 C 0.004 3.996 5 O -0.273 6.273 6 C 0.320 3.680 7 O -0.376 6.376 8 C -0.247 4.247 9 S 0.085 5.915 10 C -0.669 4.669 11 H 0.110 0.890 12 C -0.112 4.112 13 N -0.513 5.513 14 Si 0.681 3.319 15 H -0.191 1.191 16 H -0.198 1.198 17 H -0.160 1.160 18 C -0.001 4.001 19 C -0.185 4.185 20 C -0.100 4.100 21 C -0.197 4.197 22 C -0.056 4.056 23 N -0.188 5.188 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.082 0.918 32 H 0.157 0.843 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.079 -4.704 25.916 26.339 hybrid contribution -0.680 -0.298 0.126 0.753 sum -0.601 -5.003 26.042 26.525 Atomic orbital electron populations 1.21916 0.92866 1.02524 1.03156 1.20004 0.96827 1.00722 0.88528 0.87838 1.22890 1.00543 0.94525 0.81597 1.86465 1.73052 1.52989 1.14755 1.23264 0.76267 0.83901 0.84570 1.90669 1.36389 1.23391 1.87160 1.23004 1.06297 1.03486 0.91878 1.84811 1.73973 1.35535 0.97150 1.22263 1.41870 1.11649 0.91143 0.89030 1.24699 0.94623 0.96908 0.94990 1.69934 1.44358 1.37311 0.99730 0.86745 0.81707 0.83350 0.80102 1.19139 1.19806 1.15952 1.20968 0.90775 0.92963 0.95395 1.22080 1.01945 0.96846 0.97609 1.21626 0.95298 0.98595 0.94504 1.22179 0.96942 0.98685 1.01866 1.22790 0.98909 0.92384 0.91504 1.67494 1.11928 1.30268 1.09079 0.92095 0.90498 0.92154 0.90953 0.91081 0.87154 0.87090 0.91825 0.84284 0.84676 0.84723 0.82579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.52 37.16 0.32 -0.95 16 2 C -0.04 -0.44 2.95 -91.77 -0.27 -0.71 16 3 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.08 1.03 4.82 37.16 0.18 1.21 16 5 O -0.35 -5.40 9.76 -39.24 -0.38 -5.78 16 6 C 0.48 8.81 7.97 36.01 0.29 9.10 16 7 O -0.49 -10.37 15.61 -18.75 -0.29 -10.66 16 8 C -0.10 -1.93 6.27 36.01 0.23 -1.70 16 9 S -0.14 -3.51 18.55 -107.50 -1.99 -5.51 16 10 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 11 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 12 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 13 N -0.88 -26.19 13.97 55.49 0.78 -25.41 16 14 Si 0.86 21.44 27.74 -169.99 -4.72 16.73 16 15 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 18 C 0.14 1.43 5.79 -82.59 -0.48 0.95 16 19 C -0.17 -1.40 9.18 -39.44 -0.36 -1.76 16 20 C -0.07 -0.53 10.18 -39.28 -0.40 -0.93 16 21 C -0.18 -1.23 10.11 -39.44 -0.40 -1.62 16 22 C 0.10 0.87 11.18 -17.55 -0.20 0.67 16 23 N -0.48 -5.40 10.27 -9.47 -0.10 -5.50 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.71 7.82 -51.93 -0.41 0.31 16 26 H 0.06 0.45 6.49 -51.93 -0.34 0.12 16 27 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 28 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 29 H 0.11 1.99 8.14 -51.92 -0.42 1.56 16 30 H 0.11 2.03 8.14 -51.92 -0.42 1.61 16 31 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.14 0.94 6.31 -52.49 -0.33 0.61 16 33 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 34 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 319.34 15.07 4.81 4.81 Total: -1.00 -33.16 319.34 -7.23 -40.40 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -4.46 Total: -1.53 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -0.88 Total: -7.55 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: 0.68 Total: -30.91 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.68 Total: -16.44 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.72 Total: 16.73 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.16 -7.23 -40.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821485504.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.941 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds