Wall clock time and date at job start Tue Mar 31 2020 06:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 O 1.45207 * 109.46851 * 65.00566 * 4 2 1 6 6 C 1.34222 * 116.99768 * 180.02562 * 5 4 2 7 7 O 1.20828 * 120.00264 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99847 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47299 * 179.97438 * 8 6 5 10 10 C 1.76196 * 100.00349 * 179.97438 * 9 8 6 11 11 H 1.08000 * 119.99412 * 0.02562 * 10 9 8 12 12 C 1.38800 * 120.00150 * 179.97438 * 10 9 8 13 13 N 1.31634 * 119.99864 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99991 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.46774 * 90.00113 * 14 12 10 16 16 H 1.48494 * 109.47071 * 209.99791 * 14 12 10 17 17 H 1.48500 * 109.47236 * 329.99961 * 14 12 10 18 18 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 19 19 C 1.38228 * 119.61521 * 35.00175 * 18 2 1 20 20 C 1.38636 * 119.15764 * 179.97438 * 19 18 2 21 21 C 1.38669 * 118.42252 * 359.97438 * 20 19 18 22 22 C 1.38191 * 119.16134 * 0.02562 * 21 20 19 23 23 N 1.31849 * 119.61762 * 214.72709 * 18 2 1 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 28 28 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 29 29 H 1.09000 * 109.46744 * 299.99134 * 8 6 5 30 30 H 1.08999 * 109.47758 * 59.99572 * 8 6 5 31 31 H 0.97001 * 119.99713 * 180.02562 * 13 12 10 32 32 H 1.07998 * 120.42322 * 359.97438 * 19 18 2 33 33 H 1.07995 * 120.78330 * 180.02562 * 20 19 18 34 34 H 1.07992 * 120.41839 * 180.02562 * 21 20 19 35 35 H 1.08000 * 119.61700 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 1.6560 0.0286 -2.4318 6 6 2.0291 -0.4733 -3.6194 7 8 2.6562 -1.5049 -3.6692 8 6 1.6668 0.2504 -4.8907 9 16 2.3069 -0.6695 -6.3120 10 6 1.7550 0.3702 -7.6232 11 1 1.1987 1.2691 -7.4018 12 6 2.0362 0.0346 -8.9403 13 7 1.6243 0.8116 -9.9198 14 14 2.9990 -1.5197 -9.3230 15 1 2.0576 -2.6552 -9.4954 16 1 3.7750 -1.3258 -10.5741 17 1 3.9296 -1.8137 -8.2037 18 6 2.0323 -0.7104 1.2305 19 6 1.3319 -1.7934 1.7278 20 6 1.8028 -2.4402 2.8599 21 6 2.9660 -1.9718 3.4519 22 6 3.6124 -0.8832 2.8979 23 7 3.1377 -0.2951 1.8171 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1264 -0.7995 -1.2055 28 1 1.6055 -1.7198 -1.2951 29 1 0.5823 0.3295 -4.9672 30 1 2.1039 1.2488 -4.8777 31 1 1.8205 0.5769 -10.8403 32 1 0.4293 -2.1314 1.2405 33 1 1.2767 -3.2893 3.2705 34 1 3.3618 -2.4517 4.3347 35 1 4.5191 -0.5125 3.3528 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821485504.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:07 Heat of formation + Delta-G solvation = -80.178492 kcal Electronic energy + Delta-G solvation = -18469.810768 eV Core-core repulsion = 15365.179351 eV Total energy + Delta-G solvation = -3104.631417 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.69396 -41.14005 -37.99996 -35.85893 -34.68981 -33.43100 -31.68925 -30.70244 -28.00302 -27.72912 -25.03397 -24.32341 -22.55658 -21.56906 -19.96296 -18.81008 -17.88856 -17.75672 -17.36035 -17.23105 -17.03278 -16.23527 -15.97026 -15.54089 -15.21689 -14.93719 -14.82365 -14.34942 -14.06893 -13.87881 -13.59699 -13.34893 -13.11824 -13.01917 -12.80627 -12.52041 -12.38710 -12.09001 -11.89420 -11.66361 -11.65610 -11.18332 -10.83203 -10.62791 -10.40420 -9.97410 -9.06883 -8.52559 -6.26155 0.08748 0.34307 0.77948 1.05958 1.31655 1.36120 1.49582 1.82011 2.23606 2.63010 2.81395 2.85530 3.20037 3.60686 3.70250 3.86003 3.96035 4.04096 4.11801 4.14327 4.19221 4.25516 4.39768 4.44601 4.54198 4.68480 4.83278 4.94612 5.01345 5.19219 5.22005 5.27935 5.37038 5.69887 5.77191 6.11701 6.60591 6.91450 7.02228 8.59719 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.043090 B = 0.002900 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.652414 B = 9652.681838 C = 9926.152954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.034 4.034 3 H 0.092 0.908 4 C 0.079 3.921 5 O -0.343 6.343 6 C 0.490 3.510 7 O -0.520 6.520 8 C -0.089 4.089 9 S -0.164 6.164 10 C -0.531 4.531 11 H 0.066 0.934 12 C 0.047 3.953 13 N -0.914 5.914 14 Si 0.914 3.086 15 H -0.260 1.260 16 H -0.259 1.259 17 H -0.235 1.235 18 C 0.113 3.887 19 C -0.170 4.170 20 C -0.077 4.077 21 C -0.170 4.170 22 C 0.083 3.917 23 N -0.515 5.515 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.278 0.722 32 H 0.155 0.845 33 H 0.165 0.835 34 H 0.166 0.834 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.306 -5.602 28.572 29.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.053 4.053 3 H 0.110 0.890 4 C 0.005 3.995 5 O -0.260 6.260 6 C 0.332 3.668 7 O -0.408 6.408 8 C -0.237 4.237 9 S 0.062 5.938 10 C -0.678 4.678 11 H 0.084 0.916 12 C -0.159 4.159 13 N -0.552 5.552 14 Si 0.736 3.264 15 H -0.185 1.185 16 H -0.183 1.183 17 H -0.159 1.159 18 C -0.024 4.024 19 C -0.190 4.190 20 C -0.102 4.102 21 C -0.189 4.189 22 C -0.074 4.074 23 N -0.225 5.225 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.088 0.912 32 H 0.172 0.828 33 H 0.183 0.817 34 H 0.183 0.817 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.095 -6.119 28.023 28.683 hybrid contribution -0.656 0.204 -0.316 0.757 sum -0.751 -5.915 27.706 28.341 Atomic orbital electron populations 1.21901 0.91315 1.03474 1.03351 1.19929 0.98028 0.99770 0.87556 0.88981 1.23117 0.99915 0.95148 0.81346 1.86450 1.72290 1.52837 1.14433 1.22902 0.75618 0.83129 0.85133 1.90663 1.37859 1.24645 1.87650 1.22940 1.07282 1.03256 0.90228 1.84661 1.74583 1.36071 0.98465 1.22404 1.41378 1.11350 0.92673 0.91578 1.25558 0.95558 0.99857 0.94943 1.70014 1.45693 1.39104 1.00389 0.85877 0.80571 0.79716 0.80278 1.18477 1.18320 1.15935 1.20957 0.91506 0.94242 0.95736 1.22301 1.02281 0.96213 0.98161 1.22054 0.95334 0.99047 0.93813 1.22548 0.96441 0.97672 1.02282 1.23222 0.99825 0.93130 0.91180 1.67422 1.12792 1.31726 1.10533 0.90914 0.91255 0.90826 0.92399 0.90398 0.85291 0.85634 0.91248 0.82776 0.81714 0.81688 0.80839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 8.52 71.98 0.61 -1.63 16 2 C -0.03 -0.68 2.95 -11.54 -0.03 -0.72 16 3 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 4 C 0.08 2.01 4.82 71.98 0.35 2.35 16 5 O -0.34 -10.10 9.76 -51.34 -0.50 -10.60 16 6 C 0.49 17.56 7.97 71.24 0.57 18.13 16 7 O -0.52 -21.65 15.61 21.96 0.34 -21.30 16 8 C -0.09 -3.39 6.27 71.24 0.45 -2.94 16 9 S -0.16 -8.12 18.55 -56.49 -1.05 -9.16 16 10 C -0.53 -30.40 10.04 67.95 0.68 -29.72 16 11 H 0.07 4.00 8.03 -2.91 -0.02 3.98 16 12 C 0.05 2.70 5.50 84.86 0.47 3.17 16 13 N -0.91 -55.09 13.97 21.65 0.30 -54.79 16 14 Si 0.91 44.06 27.74 68.60 1.90 45.96 16 15 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 17 H -0.24 -11.27 6.74 99.48 0.67 -10.60 16 18 C 0.11 2.25 5.79 42.55 0.25 2.50 16 19 C -0.17 -2.53 9.18 22.36 0.21 -2.33 16 20 C -0.08 -0.86 10.18 22.47 0.23 -0.63 16 21 C -0.17 -1.90 10.11 22.36 0.23 -1.67 16 22 C 0.08 1.32 11.18 84.67 0.95 2.27 16 23 N -0.52 -11.39 10.27 -183.88 -1.89 -13.28 16 24 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 25 H 0.07 1.19 7.82 -2.39 -0.02 1.17 16 26 H 0.07 0.95 6.49 -2.39 -0.02 0.93 16 27 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 28 H 0.08 1.88 8.13 -2.39 -0.02 1.86 16 29 H 0.13 4.47 8.14 -2.39 -0.02 4.45 16 30 H 0.13 4.45 8.14 -2.40 -0.02 4.44 16 31 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 32 H 0.15 1.69 6.31 -2.91 -0.02 1.67 16 33 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 34 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 35 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -71.50 319.34 5.10 -66.39 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 1.05 Total: 8.02 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 4.94 Total: -11.23 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: -1.59 Total: -68.07 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.16 Total: -31.91 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.90 Total: 45.96 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.05 Total: -9.16 kcal Total: -71.50 5.10 -66.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821485504.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.786 kcal (2) G-P(sol) polarization free energy of solvation -71.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds