Wall clock time and date at job start Tue Mar 31 2020 05:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37847 * 120.06254 * 2 1 4 4 C 1.38639 * 120.12672 * 179.97438 * 3 2 1 5 5 F 1.35099 * 119.87639 * 179.97438 * 4 3 2 6 6 C 1.38689 * 120.25387 * 359.97438 * 4 3 2 7 7 C 1.37807 * 120.12228 * 0.02562 * 6 4 3 8 8 C 1.39700 * 120.06810 * 179.97438 * 2 1 3 9 9 C 1.47610 * 120.12006 * 359.74623 * 8 2 1 10 10 O 1.21609 * 119.99991 * 305.00395 * 9 8 2 11 11 N 1.34776 * 119.99977 * 125.00793 * 9 8 2 12 12 C 1.36884 * 120.00159 * 184.10402 * 11 9 8 13 13 H 1.08003 * 120.00248 * 337.70970 * 12 11 9 14 14 C 1.39033 * 119.99983 * 157.70514 * 12 11 9 15 15 N 1.31375 * 120.00116 * 355.31119 * 14 12 11 16 16 Si 1.86806 * 119.99781 * 175.30265 * 14 12 11 17 17 H 1.48500 * 109.46975 * 90.00742 * 16 14 12 18 18 H 1.48502 * 109.46846 * 210.00249 * 16 14 12 19 19 H 1.48495 * 109.47249 * 330.00460 * 16 14 12 20 20 C 1.46500 * 119.99946 * 4.10501 * 11 9 8 21 21 C 1.50697 * 109.47590 * 276.77417 * 20 11 9 22 22 O 1.20829 * 119.99272 * 359.97438 * 21 20 11 23 23 O 1.34223 * 120.00348 * 179.97438 * 21 20 11 24 24 H 1.08998 * 109.46864 * 273.52611 * 1 2 3 25 25 H 1.08999 * 109.47342 * 33.53085 * 1 2 3 26 26 H 1.09005 * 109.46609 * 153.53393 * 1 2 3 27 27 H 1.08004 * 119.93766 * 359.95815 * 3 2 1 28 28 H 1.08005 * 119.94124 * 179.97438 * 6 4 3 29 29 H 1.08003 * 120.05904 * 180.02562 * 7 6 4 30 30 H 0.97003 * 119.99508 * 179.97438 * 15 14 12 31 31 H 1.09004 * 109.46793 * 36.77348 * 20 11 9 32 32 H 1.08999 * 109.47286 * 156.76674 * 20 11 9 33 33 H 0.96705 * 117.00132 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1930 0.0000 4 6 3.5839 1.1946 0.0005 5 9 4.2556 2.3668 0.0000 6 6 4.2840 -0.0026 0.0016 7 6 3.6042 -1.2013 0.0016 8 6 2.2069 -1.2090 0.0005 9 6 1.4731 -2.4898 0.0068 10 8 0.6499 -2.7147 0.8732 11 7 1.7154 -3.4099 -0.9477 12 6 0.9765 -4.5613 -0.9918 13 1 0.4706 -4.9127 -0.1046 14 6 0.8771 -5.2786 -2.1787 15 7 1.4148 -4.8045 -3.2796 16 14 -0.0208 -6.9164 -2.2078 17 1 -1.4557 -6.6888 -2.5153 18 1 0.5762 -7.7897 -3.2500 19 1 0.1033 -7.5726 -0.8815 20 6 2.7697 -3.1778 -1.9381 21 6 2.2314 -2.3185 -3.0529 22 8 1.0845 -1.9393 -3.0234 23 8 3.0258 -1.9744 -4.0786 24 1 -0.3633 0.0632 1.0257 25 1 -0.3634 0.8566 -0.5677 26 1 -0.3633 -0.9200 -0.4580 27 1 1.6575 2.1284 -0.0007 28 1 5.3641 0.0045 0.0016 29 1 4.1504 -2.1330 0.0029 30 1 1.3458 -5.3052 -4.1076 31 1 3.6098 -2.6717 -1.4626 32 1 3.1034 -4.1327 -2.3441 33 1 2.6357 -1.4223 -4.7702 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832890542.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:47 Heat of formation + Delta-G solvation = -128.560886 kcal Electronic energy + Delta-G solvation = -22725.989763 eV Core-core repulsion = 19053.047152 eV Total energy + Delta-G solvation = -3672.942611 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -48.75044 -39.97976 -38.80363 -37.46703 -35.30095 -34.58373 -32.52444 -31.90373 -30.32153 -27.74385 -26.95990 -25.04802 -22.97579 -21.69069 -21.10125 -19.44946 -17.34109 -17.09138 -16.96514 -16.64027 -16.20846 -15.54076 -15.45783 -15.18162 -14.53154 -14.19781 -13.98078 -13.76060 -13.41561 -13.13471 -12.89753 -12.72348 -12.23083 -11.96696 -11.72952 -11.48438 -11.44016 -11.29905 -11.02480 -10.72103 -10.51503 -10.45457 -10.38206 -9.67856 -9.13590 -8.78737 -8.68482 -8.27703 -7.98552 -6.52182 -4.06701 1.20499 1.43604 3.08343 3.18416 3.22990 3.38004 3.57136 3.73120 4.07607 4.23848 4.38705 4.63523 4.89290 4.97275 5.00539 5.29273 5.38461 5.59884 5.83712 5.90149 6.01899 6.10799 6.16172 6.25836 6.39224 6.45630 6.59455 6.65965 6.83666 7.07875 7.39958 7.49195 7.88454 8.25204 8.94111 9.00883 9.17095 9.69596 10.53107 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.024025 B = 0.006451 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.192338 B = 4339.622928 C = 4807.735615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.012 4.012 3 C -0.160 4.160 4 C 0.098 3.902 5 F -0.144 7.144 6 C -0.162 4.162 7 C -0.079 4.079 8 C -0.106 4.106 9 C 0.500 3.500 10 O -0.567 6.567 11 N -0.421 5.421 12 C -0.297 4.297 13 H 0.109 0.891 14 C 0.030 3.970 15 N -0.890 5.890 16 Si 0.939 3.061 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.268 1.268 20 C 0.133 3.867 21 C 0.495 3.505 22 O -0.510 6.510 23 O -0.533 6.533 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.273 0.727 31 H 0.080 0.920 32 H 0.141 0.859 33 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.195 7.043 0.633 9.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.013 4.013 3 C -0.179 4.179 4 C 0.078 3.922 5 F -0.123 7.123 6 C -0.181 4.181 7 C -0.097 4.097 8 C -0.110 4.110 9 C 0.289 3.711 10 O -0.450 6.450 11 N -0.139 5.139 12 C -0.424 4.424 13 H 0.126 0.874 14 C -0.172 4.172 15 N -0.531 5.531 16 Si 0.765 3.235 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.192 1.192 20 C 0.007 3.993 21 C 0.336 3.664 22 O -0.396 6.396 23 O -0.343 6.343 24 H 0.095 0.905 25 H 0.081 0.919 26 H 0.102 0.898 27 H 0.152 0.848 28 H 0.154 0.846 29 H 0.158 0.842 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.159 0.841 33 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 5.650 6.707 1.192 8.850 hybrid contribution -0.494 -0.119 -0.955 1.082 sum 5.156 6.587 0.237 8.368 Atomic orbital electron populations 1.20821 0.89900 1.03694 1.02547 1.19726 0.96852 0.90575 0.94123 1.20881 0.92105 0.99000 1.05931 1.17759 0.90086 0.81022 1.03322 1.91464 1.80593 1.46208 1.94050 1.20950 1.00564 0.90981 1.05625 1.21240 0.93118 0.97865 0.97509 1.20307 0.93599 0.95025 1.02037 1.17826 0.84846 0.82628 0.85817 1.90647 1.36954 1.78531 1.38862 1.43309 1.30407 1.16418 1.23752 1.19780 1.27656 0.97534 0.97478 0.87368 1.25369 0.97055 1.00548 0.94191 1.69620 1.44476 1.38900 1.00067 0.85718 0.79352 0.80187 0.78219 1.20244 1.20748 1.19238 1.21135 0.89751 1.01444 0.86968 1.23732 0.84296 0.76379 0.82018 1.90589 1.18953 1.52379 1.77704 1.84521 1.48084 1.67472 1.34261 0.90546 0.91933 0.89777 0.84774 0.84640 0.84221 0.91587 0.90207 0.84123 0.75284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 9.24 36.01 0.33 -1.71 16 2 C -0.01 -0.21 5.91 -104.22 -0.62 -0.83 16 3 C -0.16 -2.51 9.68 -39.58 -0.38 -2.90 16 4 C 0.10 1.48 7.31 -39.27 -0.29 1.19 16 5 F -0.14 -2.09 17.26 2.25 0.04 -2.05 16 6 C -0.16 -2.35 10.01 -39.57 -0.40 -2.74 16 7 C -0.08 -1.30 7.82 -39.18 -0.31 -1.60 16 8 C -0.11 -2.12 4.84 -104.97 -0.51 -2.63 16 9 C 0.50 12.04 5.75 -12.44 -0.07 11.97 16 10 O -0.57 -15.25 15.74 5.27 0.08 -15.17 16 11 N -0.42 -10.33 2.19 -117.25 -0.26 -10.59 16 12 C -0.30 -7.86 9.34 -15.00 -0.14 -8.00 16 13 H 0.11 2.96 7.35 -52.48 -0.39 2.58 16 14 C 0.03 0.76 5.22 -17.45 -0.09 0.67 16 15 N -0.89 -22.41 8.78 55.50 0.49 -21.93 16 16 Si 0.94 20.06 29.56 -169.99 -5.02 15.04 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 20 C 0.13 2.85 4.92 -5.19 -0.03 2.83 16 21 C 0.49 10.93 6.18 36.00 0.22 11.15 16 22 O -0.51 -12.99 16.88 -18.75 -0.32 -13.31 16 23 O -0.53 -9.68 13.42 -39.24 -0.53 -10.21 16 24 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 25 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 26 H 0.08 1.84 6.69 -51.93 -0.35 1.50 16 27 H 0.13 1.76 8.06 -52.48 -0.42 1.34 16 28 H 0.14 1.55 8.06 -52.48 -0.42 1.13 16 29 H 0.14 2.05 6.66 -52.48 -0.35 1.70 16 30 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 31 H 0.08 1.44 4.17 -51.93 -0.22 1.22 16 32 H 0.14 3.14 6.18 -51.93 -0.32 2.82 16 33 H 0.39 5.50 9.10 45.56 0.41 5.92 16 LS Contribution 292.18 15.07 4.40 4.40 Total: -1.00 -31.47 292.18 -5.41 -36.88 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -2.03 Total: 9.53 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -2.27 Total: 7.40 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 0.23 Total: -32.51 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -0.76 Total: -38.68 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.47 -5.41 -36.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832890542.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.682 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds