Wall clock time and date at job start Tue Mar 31 2020 05:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37847 * 120.06254 * 2 1 4 4 C 1.38639 * 120.12672 * 179.97438 * 3 2 1 5 5 F 1.35099 * 119.87639 * 179.97438 * 4 3 2 6 6 C 1.38689 * 120.25387 * 359.97438 * 4 3 2 7 7 C 1.37807 * 120.12228 * 0.02562 * 6 4 3 8 8 C 1.39700 * 120.06810 * 179.97438 * 2 1 3 9 9 C 1.47610 * 120.12006 * 359.74623 * 8 2 1 10 10 O 1.21609 * 119.99991 * 305.00395 * 9 8 2 11 11 N 1.34776 * 119.99977 * 125.00793 * 9 8 2 12 12 C 1.36884 * 120.00159 * 184.10402 * 11 9 8 13 13 H 1.08003 * 120.00248 * 337.70970 * 12 11 9 14 14 C 1.39033 * 119.99983 * 157.70514 * 12 11 9 15 15 N 1.31375 * 120.00116 * 355.31119 * 14 12 11 16 16 Si 1.86806 * 119.99781 * 175.30265 * 14 12 11 17 17 H 1.48500 * 109.46975 * 90.00742 * 16 14 12 18 18 H 1.48502 * 109.46846 * 210.00249 * 16 14 12 19 19 H 1.48495 * 109.47249 * 330.00460 * 16 14 12 20 20 C 1.46500 * 119.99946 * 4.10501 * 11 9 8 21 21 C 1.50697 * 109.47590 * 276.77417 * 20 11 9 22 22 O 1.20829 * 119.99272 * 359.97438 * 21 20 11 23 23 O 1.34223 * 120.00348 * 179.97438 * 21 20 11 24 24 H 1.08998 * 109.46864 * 273.52611 * 1 2 3 25 25 H 1.08999 * 109.47342 * 33.53085 * 1 2 3 26 26 H 1.09005 * 109.46609 * 153.53393 * 1 2 3 27 27 H 1.08004 * 119.93766 * 359.95815 * 3 2 1 28 28 H 1.08005 * 119.94124 * 179.97438 * 6 4 3 29 29 H 1.08003 * 120.05904 * 180.02562 * 7 6 4 30 30 H 0.97003 * 119.99508 * 179.97438 * 15 14 12 31 31 H 1.09004 * 109.46793 * 36.77348 * 20 11 9 32 32 H 1.08999 * 109.47286 * 156.76674 * 20 11 9 33 33 H 0.96705 * 117.00132 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1930 0.0000 4 6 3.5839 1.1946 0.0005 5 9 4.2556 2.3668 0.0000 6 6 4.2840 -0.0026 0.0016 7 6 3.6042 -1.2013 0.0016 8 6 2.2069 -1.2090 0.0005 9 6 1.4731 -2.4898 0.0068 10 8 0.6499 -2.7147 0.8732 11 7 1.7154 -3.4099 -0.9477 12 6 0.9765 -4.5613 -0.9918 13 1 0.4706 -4.9127 -0.1046 14 6 0.8771 -5.2786 -2.1787 15 7 1.4148 -4.8045 -3.2796 16 14 -0.0208 -6.9164 -2.2078 17 1 -1.4557 -6.6888 -2.5153 18 1 0.5762 -7.7897 -3.2500 19 1 0.1033 -7.5726 -0.8815 20 6 2.7697 -3.1778 -1.9381 21 6 2.2314 -2.3185 -3.0529 22 8 1.0845 -1.9393 -3.0234 23 8 3.0258 -1.9744 -4.0786 24 1 -0.3633 0.0632 1.0257 25 1 -0.3634 0.8566 -0.5677 26 1 -0.3633 -0.9200 -0.4580 27 1 1.6575 2.1284 -0.0007 28 1 5.3641 0.0045 0.0016 29 1 4.1504 -2.1330 0.0029 30 1 1.3458 -5.3052 -4.1076 31 1 3.6098 -2.6717 -1.4626 32 1 3.1034 -4.1327 -2.3441 33 1 2.6357 -1.4223 -4.7702 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832890542.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:46 Heat of formation + Delta-G solvation = -148.752457 kcal Electronic energy + Delta-G solvation = -22726.865335 eV Core-core repulsion = 19053.047152 eV Total energy + Delta-G solvation = -3673.818183 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.92380 -41.61423 -40.40738 -39.06705 -37.05407 -36.37558 -34.02756 -33.59376 -31.75390 -29.50256 -28.36365 -26.83914 -24.41982 -23.07651 -22.76485 -21.04372 -19.13765 -18.74439 -18.32880 -18.25357 -17.62635 -17.12986 -16.96143 -16.62049 -16.23382 -15.94399 -15.41257 -15.32816 -14.92297 -14.49092 -14.30774 -14.22926 -13.77305 -13.66627 -13.38429 -13.17039 -12.93187 -12.84681 -12.65944 -12.38257 -12.14327 -12.13063 -11.97041 -11.51259 -10.98812 -10.60971 -10.00695 -9.87182 -9.60766 -8.42712 -6.05429 -0.12993 0.18246 1.36145 1.41590 1.53996 1.69458 1.87150 2.19083 2.42646 2.62898 2.94168 3.09032 3.14930 3.64997 3.71809 3.85254 4.09505 4.28941 4.32540 4.52697 4.68995 4.71006 4.80531 4.83958 4.97239 5.02163 5.10909 5.18824 5.38946 5.46095 5.81662 5.95133 5.99945 6.35362 7.03407 7.23508 7.44335 7.83870 8.60044 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.024025 B = 0.006451 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.192338 B = 4339.622928 C = 4807.735615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.030 4.030 3 C -0.153 4.153 4 C 0.105 3.895 5 F -0.135 7.135 6 C -0.146 4.146 7 C -0.079 4.079 8 C -0.136 4.136 9 C 0.496 3.504 10 O -0.612 6.612 11 N -0.432 5.432 12 C -0.333 4.333 13 H 0.083 0.917 14 C 0.000 4.000 15 N -0.899 5.899 16 Si 0.997 3.003 17 H -0.285 1.285 18 H -0.265 1.265 19 H -0.265 1.265 20 C 0.132 3.868 21 C 0.500 3.500 22 O -0.551 6.551 23 O -0.518 6.518 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.035 0.965 27 H 0.161 0.839 28 H 0.175 0.825 29 H 0.156 0.844 30 H 0.276 0.724 31 H 0.116 0.884 32 H 0.132 0.868 33 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.281 8.357 -0.051 11.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.031 4.031 3 C -0.172 4.172 4 C 0.086 3.914 5 F -0.114 7.114 6 C -0.164 4.164 7 C -0.097 4.097 8 C -0.140 4.140 9 C 0.286 3.714 10 O -0.498 6.498 11 N -0.150 5.150 12 C -0.461 4.461 13 H 0.101 0.899 14 C -0.200 4.200 15 N -0.538 5.538 16 Si 0.821 3.179 17 H -0.212 1.212 18 H -0.190 1.190 19 H -0.190 1.190 20 C 0.008 3.992 21 C 0.343 3.657 22 O -0.440 6.440 23 O -0.330 6.330 24 H 0.099 0.901 25 H 0.108 0.892 26 H 0.054 0.946 27 H 0.179 0.821 28 H 0.192 0.808 29 H 0.173 0.827 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.150 0.850 33 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 7.791 8.041 0.466 11.206 hybrid contribution -1.072 -0.392 -0.764 1.373 sum 6.719 7.649 -0.298 10.186 Atomic orbital electron populations 1.20728 0.90537 1.02283 1.02818 1.19812 0.96796 0.91207 0.95322 1.21046 0.92673 0.98830 1.04648 1.17843 0.89948 0.81560 1.02053 1.91499 1.80304 1.45763 1.93813 1.21282 1.02377 0.89590 1.03172 1.21378 0.91584 0.99621 0.97140 1.20118 0.95106 0.93225 1.05536 1.18496 0.84445 0.83748 0.84667 1.90586 1.39044 1.79768 1.40447 1.43420 1.30894 1.16254 1.24454 1.19712 1.29458 0.99458 0.97436 0.89894 1.26052 0.97304 1.03107 0.93564 1.69703 1.44425 1.39584 1.00131 0.84868 0.77595 0.76860 0.78605 1.21166 1.18953 1.18970 1.21240 0.89845 1.01392 0.86771 1.23746 0.83748 0.75700 0.82504 1.90582 1.20715 1.54054 1.78660 1.84448 1.47103 1.67511 1.33956 0.90080 0.89186 0.94584 0.82114 0.80752 0.82672 0.91363 0.86631 0.85048 0.72911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.95 9.24 71.24 0.66 -3.30 16 2 C -0.03 -1.09 5.91 -19.60 -0.12 -1.21 16 3 C -0.15 -4.37 9.68 22.27 0.22 -4.16 16 4 C 0.11 2.77 7.31 22.47 0.16 2.94 16 5 F -0.14 -3.31 17.26 44.97 0.78 -2.53 16 6 C -0.15 -3.60 10.01 22.28 0.22 -3.38 16 7 C -0.08 -2.42 7.82 22.53 0.18 -2.24 16 8 C -0.14 -5.42 4.84 -20.09 -0.10 -5.52 16 9 C 0.50 24.81 5.75 86.72 0.50 25.31 16 10 O -0.61 -34.96 15.74 -4.06 -0.06 -35.03 16 11 N -0.43 -21.92 2.19 -643.13 -1.41 -23.33 16 12 C -0.33 -18.39 9.34 84.10 0.79 -17.60 16 13 H 0.08 4.86 7.35 -2.91 -0.02 4.84 16 14 C 0.00 0.02 5.22 84.95 0.44 0.47 16 15 N -0.90 -45.39 8.78 21.68 0.19 -45.20 16 16 Si 1.00 41.69 29.56 68.60 2.03 43.72 16 17 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 19 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 20 C 0.13 5.66 4.92 85.63 0.42 6.08 16 21 C 0.50 21.79 6.18 71.23 0.44 22.23 16 22 O -0.55 -28.37 16.88 21.95 0.37 -28.00 16 23 O -0.52 -17.74 13.42 -51.35 -0.69 -18.43 16 24 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 25 H 0.09 2.69 8.11 -2.39 -0.02 2.67 16 26 H 0.03 1.66 6.69 -2.38 -0.02 1.64 16 27 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 28 H 0.18 2.98 8.06 -2.91 -0.02 2.95 16 29 H 0.16 4.16 6.66 -2.91 -0.02 4.14 16 30 H 0.28 13.25 8.31 -92.71 -0.77 12.48 16 31 H 0.12 3.99 4.17 -2.38 -0.01 3.98 16 32 H 0.13 5.86 6.18 -2.39 -0.01 5.85 16 33 H 0.41 10.61 9.10 -74.05 -0.67 9.93 16 Total: -1.00 -71.14 292.18 5.53 -65.61 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.51 Total: 23.56 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: 3.81 Total: 19.62 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: -1.22 Total: -68.53 kcal Atomic # 8 Polarization: -81.06 SS G_CDS: -0.38 Total: -81.45 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.78 Total: -2.53 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -71.14 5.53 -65.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832890542.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.145 kcal (2) G-P(sol) polarization free energy of solvation -71.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds