Wall clock time and date at job start Tue Mar 31 2020 05:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.50706 * 109.46783 * 239.99845 * 2 1 3 5 5 H 1.07996 * 119.99928 * 239.99923 * 4 2 1 6 6 C 1.37880 * 119.99611 * 60.00217 * 4 2 1 7 7 N 1.31511 * 120.00327 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99743 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46828 * 90.00241 * 8 6 4 10 10 H 1.48494 * 109.47178 * 209.99936 * 8 6 4 11 11 H 1.48500 * 109.47075 * 330.00183 * 8 6 4 12 12 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 13 13 N 1.46499 * 109.46840 * 299.99500 * 12 2 1 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 2 15 15 O 1.21612 * 120.00213 * 0.02562 * 14 13 12 16 16 C 1.47373 * 119.99902 * 180.02562 * 14 13 12 17 17 C 1.36776 * 122.89697 * 0.02866 * 16 14 13 18 18 S 1.70553 * 110.75711 * 179.97438 * 17 16 14 19 19 C 1.75689 * 91.91873 * 359.97438 * 18 17 16 20 20 C 1.41446 * 125.13252 * 180.02562 * 19 18 17 21 21 O 1.21427 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.36404 * 109.73199 * 359.76862 * 19 18 17 23 23 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 24 24 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 25 25 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 28 28 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 29 29 H 0.97000 * 120.00354 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47398 * 59.99826 * 12 2 1 31 31 H 1.09001 * 109.47194 * 180.02562 * 12 2 1 32 32 H 0.97000 * 120.00420 * 0.02562 * 13 12 2 33 33 H 1.08003 * 124.61479 * 359.95956 * 17 16 14 34 34 H 1.07994 * 119.99823 * 359.96983 * 20 19 18 35 35 H 1.07996 * 123.30630 * 180.23472 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3444 -2.1615 -4.4124 10 1 2.4870 -0.1403 -5.1121 11 1 3.6306 -1.7567 -3.7121 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8779 -0.4910 3.6695 15 8 2.5777 -1.4792 3.7810 16 6 1.3862 0.2035 4.8728 17 6 0.5960 1.3184 4.8163 18 16 0.2086 1.8647 6.3848 19 6 1.1283 0.5656 7.1285 20 6 1.2709 0.3629 8.5211 21 8 1.9303 -0.5691 8.9345 22 6 1.6795 -0.2212 6.1602 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9562 0.8900 29 1 0.7080 1.1609 -3.4844 30 1 1.6767 -1.7490 1.2492 31 1 3.1301 -0.7209 1.2494 32 1 0.9939 0.7578 2.3565 33 1 0.2629 1.7887 3.9029 34 1 0.7933 1.0371 9.2165 35 1 2.2873 -1.0877 6.3749 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837888510.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:57 Heat of formation + Delta-G solvation = -64.828313 kcal Electronic energy + Delta-G solvation = -19197.883113 eV Core-core repulsion = 16093.917330 eV Total energy + Delta-G solvation = -3103.965783 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.22253 -40.20161 -38.40119 -37.59614 -35.10349 -32.91216 -31.41401 -27.63054 -27.57456 -27.11923 -26.90621 -24.56363 -21.62260 -20.69082 -20.26765 -19.24097 -18.35021 -17.73207 -16.75456 -16.67237 -16.41868 -16.31673 -16.04471 -15.54117 -14.92027 -14.80549 -14.66334 -14.03381 -13.94070 -13.81662 -13.64191 -13.19731 -13.10956 -12.70125 -12.61690 -12.29824 -12.26488 -12.13829 -11.50592 -11.34637 -11.12719 -10.91158 -10.71459 -10.41270 -10.15366 -9.99279 -9.56821 -8.03877 -6.19169 -0.87574 0.40126 0.43251 0.66623 1.41760 1.45056 1.53001 1.73098 2.22955 2.31649 2.47877 3.19999 3.44649 3.84408 3.96810 4.09669 4.27691 4.42269 4.47812 4.65824 4.69760 4.92288 4.95990 5.03410 5.05968 5.15025 5.17764 5.31732 5.53371 5.66223 5.66588 6.14688 6.19599 6.42317 6.43554 6.58153 6.84236 7.20615 7.48538 8.95049 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.040668 B = 0.003479 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.341045 B = 8047.382252 C = 8544.657269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 C -0.121 4.121 4 C -0.531 4.531 5 H 0.042 0.958 6 C 0.031 3.969 7 N -0.897 5.897 8 Si 0.943 3.057 9 H -0.279 1.279 10 H -0.281 1.281 11 H -0.278 1.278 12 C 0.146 3.854 13 N -0.700 5.700 14 C 0.562 3.438 15 O -0.594 6.594 16 C -0.192 4.192 17 C -0.194 4.194 18 S 0.405 5.595 19 C -0.358 4.358 20 C 0.415 3.585 21 O -0.509 6.509 22 C -0.023 4.023 23 H 0.040 0.960 24 H 0.065 0.935 25 H 0.017 0.983 26 H 0.017 0.983 27 H 0.065 0.935 28 H 0.040 0.960 29 H 0.261 0.739 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.409 0.591 33 H 0.201 0.799 34 H 0.162 0.838 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.611 9.319 18.028 21.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.570 4.570 5 H 0.061 0.939 6 C -0.169 4.169 7 N -0.536 5.536 8 Si 0.770 3.230 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.023 3.977 13 N -0.351 5.351 14 C 0.349 3.651 15 O -0.477 6.477 16 C -0.208 4.208 17 C -0.334 4.334 18 S 0.674 5.326 19 C -0.476 4.476 20 C 0.277 3.723 21 O -0.387 6.387 22 C -0.055 4.055 23 H 0.058 0.942 24 H 0.083 0.917 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.248 0.752 33 H 0.218 0.782 34 H 0.178 0.822 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.734 9.500 18.713 22.040 hybrid contribution 1.281 -1.829 -2.190 3.128 sum -5.453 7.671 16.522 19.015 Atomic orbital electron populations 1.21680 0.96868 0.98737 1.00602 1.18363 0.93433 0.93128 0.89966 1.21677 0.97947 0.97662 1.00600 1.21274 1.31850 1.12216 0.91662 0.93920 1.25408 0.95122 0.95568 1.00821 1.69882 1.36873 1.23146 1.23663 0.85787 0.78622 0.78548 0.80013 1.20512 1.20691 1.20270 1.21344 0.97132 0.95204 0.84066 1.45930 1.52449 1.31824 1.04883 1.18250 0.79642 0.83429 0.83793 1.90745 1.40772 1.28641 1.87501 1.18915 1.07723 1.00660 0.93485 1.26716 0.99951 0.98775 1.07982 1.82364 1.39894 1.20482 0.89870 1.24861 1.14159 1.06945 1.01682 1.22585 0.76885 0.84874 0.87985 1.90618 1.34812 1.31762 1.81527 1.20726 0.95840 0.98429 0.90529 0.94160 0.91653 0.96424 0.96410 0.91662 0.94151 0.92945 0.94269 0.94294 0.75249 0.78175 0.82191 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.18 8.08 71.98 0.58 -4.60 16 2 C 0.05 2.35 0.50 -52.93 -0.03 2.32 16 3 C -0.12 -5.18 8.08 71.98 0.58 -4.60 16 4 C -0.53 -27.96 8.01 25.60 0.21 -27.75 16 5 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 6 C 0.03 1.60 5.15 84.66 0.44 2.04 16 7 N -0.90 -46.79 9.35 21.45 0.20 -46.59 16 8 Si 0.94 42.31 29.54 68.60 2.03 44.33 16 9 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 C 0.15 6.25 4.50 86.38 0.39 6.64 16 13 N -0.70 -24.08 4.93 -466.42 -2.30 -26.38 16 14 C 0.56 20.18 7.79 86.65 0.67 20.85 16 15 O -0.59 -26.88 16.68 -4.07 -0.07 -26.95 16 16 C -0.19 -5.05 5.81 -21.11 -0.12 -5.17 16 17 C -0.19 -3.15 10.40 67.48 0.70 -2.45 16 18 S 0.40 3.66 23.02 -56.49 -1.30 2.36 16 19 C -0.36 -6.30 6.22 22.63 0.14 -6.16 16 20 C 0.41 6.59 11.46 68.61 0.79 7.38 16 21 O -0.51 -13.65 17.51 -3.49 -0.06 -13.71 16 22 C -0.02 -0.60 9.47 21.95 0.21 -0.39 16 23 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 24 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 25 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 3.11 6.07 -2.38 -0.01 3.09 16 28 H 0.04 1.39 6.86 -2.39 -0.02 1.38 16 29 H 0.26 13.11 8.31 -92.71 -0.77 12.34 16 30 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.41 11.47 4.61 -92.71 -0.43 11.04 16 33 H 0.20 2.30 6.97 -2.91 -0.02 2.28 16 34 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 35 H 0.13 4.14 7.92 -2.91 -0.02 4.11 16 Total: -1.00 -71.02 309.87 3.75 -67.27 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.69 Total: 11.57 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: 4.56 Total: -11.90 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -2.10 Total: -72.97 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -0.13 Total: -40.66 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.30 Total: 2.36 kcal Total: -71.02 3.75 -67.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837888510.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.441 kcal (2) G-P(sol) polarization free energy of solvation -71.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds