Wall clock time and date at job start Tue Mar 31 2020 05:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09002 * 109.47069 * 304.99600 * 3 2 1 5 5 O 1.45194 * 109.47550 * 64.99895 * 3 2 1 6 6 C 1.34227 * 117.00195 * 270.00175 * 5 3 2 7 7 O 1.20824 * 120.00013 * 359.97438 * 6 5 3 8 8 C 1.50698 * 120.00334 * 179.97438 * 6 5 3 9 9 S 1.80998 * 109.47300 * 179.97438 * 8 6 5 10 10 C 1.76202 * 100.00031 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99834 * 359.97438 * 10 9 8 12 12 C 1.38795 * 120.00029 * 179.97438 * 10 9 8 13 13 N 1.31628 * 120.00152 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00142 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46870 * 59.99741 * 14 12 10 16 16 H 1.48499 * 109.47344 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46914 * 300.00186 * 14 12 10 18 18 C 1.50703 * 109.46801 * 184.99876 * 3 2 1 19 19 C 1.38650 * 120.79330 * 279.71742 * 18 3 2 20 20 C 1.38201 * 119.16022 * 179.75765 * 19 18 3 21 21 N 1.31861 * 120.76687 * 0.53110 * 20 19 18 22 22 C 1.31866 * 121.72647 * 359.73972 * 21 20 19 23 23 C 1.38205 * 120.76809 * 359.97438 * 22 21 20 24 24 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 29 29 H 1.09001 * 109.47203 * 300.00119 * 8 6 5 30 30 H 1.09002 * 109.47085 * 59.99308 * 8 6 5 31 31 H 0.96998 * 120.00441 * 180.02562 * 13 12 10 32 32 H 1.08003 * 120.41238 * 0.02562 * 19 18 3 33 33 H 1.08010 * 119.61380 * 180.25181 * 20 19 18 34 34 H 1.08000 * 119.61713 * 180.02562 * 22 21 20 35 35 H 1.07993 * 120.42337 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 8 1.6559 2.0917 1.2406 6 6 0.4727 2.7255 1.2559 7 8 -0.2189 2.7378 0.2652 8 6 0.0069 3.4218 2.5086 9 16 -1.6115 4.1763 2.2133 10 6 -1.9057 4.8978 3.7936 11 1 -1.1743 4.7902 4.5810 12 6 -3.0774 5.6045 4.0267 13 7 -3.9686 5.7361 3.0669 14 14 -3.3890 6.3700 5.7019 15 1 -2.3136 7.3476 6.0071 16 1 -4.7011 7.0652 5.6922 17 1 -3.3995 5.3062 6.7380 18 6 3.5419 1.4442 -0.1238 19 6 4.3455 1.2100 0.9815 20 6 5.7190 1.2144 0.8286 21 7 6.2659 1.4480 -0.3483 22 6 5.5331 1.6800 -1.4198 23 6 4.1531 1.6857 -1.3448 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 -0.0720 2.6972 3.3191 30 1 0.7240 4.1959 2.7820 31 1 -4.7872 6.2302 3.2296 32 1 3.9035 1.0222 1.9489 33 1 6.3519 1.0287 1.6839 34 1 6.0168 1.8669 -2.3671 35 1 3.5583 1.8768 -2.2257 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839005491.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:50 Heat of formation + Delta-G solvation = -60.216993 kcal Electronic energy + Delta-G solvation = -18997.692592 eV Core-core repulsion = 15893.926770 eV Total energy + Delta-G solvation = -3103.765821 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.81510 -39.90848 -36.66606 -34.28549 -32.51670 -32.19561 -31.43295 -29.75430 -26.93547 -25.57479 -23.76149 -22.89072 -21.89258 -20.47511 -18.07021 -17.58386 -17.11097 -16.37363 -16.12488 -15.84494 -15.29338 -14.87394 -14.40832 -14.19474 -13.88749 -13.84237 -13.82890 -13.26307 -12.71597 -12.52763 -12.24232 -12.00999 -11.79307 -11.54497 -11.13476 -11.08679 -10.96389 -10.85311 -10.54996 -10.02602 -9.96453 -9.81014 -9.65182 -9.37513 -9.13674 -8.40758 -6.63943 -6.30288 -4.03346 0.89303 0.94373 2.56332 2.59200 3.19773 3.20872 3.25058 3.44245 3.59530 4.11734 4.20386 4.25089 4.56587 4.70394 4.89067 4.91414 4.94874 4.96787 5.05644 5.27023 5.35837 5.40614 5.50010 5.59619 5.65581 5.72127 5.73310 5.86982 5.99016 6.02942 6.11549 6.35058 6.45006 6.64411 7.52064 7.72785 8.09979 8.26990 9.15215 10.77121 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.029123 B = 0.003514 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.204832 B = 7966.655570 C = 8461.867002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.131 4.131 3 C 0.126 3.874 4 H 0.099 0.901 5 O -0.352 6.352 6 C 0.480 3.520 7 O -0.481 6.481 8 C -0.129 4.129 9 S -0.056 6.056 10 C -0.538 4.538 11 H 0.075 0.925 12 C 0.075 3.925 13 N -0.868 5.868 14 Si 0.921 3.079 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.273 1.273 18 C -0.041 4.041 19 C -0.145 4.145 20 C 0.096 3.904 21 N -0.486 5.486 22 C 0.097 3.903 23 C -0.161 4.161 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.270 0.730 32 H 0.142 0.858 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.383 -10.681 -5.961 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.169 4.169 3 C 0.071 3.929 4 H 0.117 0.883 5 O -0.270 6.270 6 C 0.321 3.679 7 O -0.366 6.366 8 C -0.277 4.277 9 S 0.171 5.829 10 C -0.686 4.686 11 H 0.094 0.906 12 C -0.134 4.134 13 N -0.502 5.502 14 Si 0.747 3.253 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.198 1.198 18 C -0.050 4.050 19 C -0.165 4.165 20 C -0.061 4.061 21 N -0.195 5.195 22 C -0.060 4.060 23 C -0.181 4.181 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.159 0.841 33 H 0.175 0.825 34 H 0.175 0.825 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 15.269 -10.610 -7.357 19.996 hybrid contribution -0.423 0.499 2.160 2.257 sum 14.846 -10.111 -5.197 18.699 Atomic orbital electron populations 1.21857 0.93895 1.01721 1.03547 1.21936 0.97615 0.94145 1.03171 1.21482 0.89745 0.94343 0.87350 0.88340 1.86568 1.38281 1.64167 1.38000 1.23276 0.78459 0.75642 0.90498 1.90666 1.54097 1.56611 1.35256 1.23313 1.06327 1.02711 0.95368 1.85394 1.11304 1.66612 1.19624 1.22805 1.08067 1.39935 0.97792 0.90645 1.24994 0.94831 0.95438 0.98162 1.69993 1.08854 1.39101 1.32291 0.86182 0.77725 0.79236 0.82148 1.19822 1.20753 1.19815 1.20105 0.94524 0.96351 0.93979 1.22086 0.94691 0.99794 0.99902 1.22808 0.92739 0.95333 0.95212 1.67663 1.41185 1.11170 0.99479 1.22725 0.90451 0.95515 0.97303 1.22023 0.96525 1.01442 0.98083 0.91542 0.92506 0.92281 0.90314 0.90822 0.87962 0.87997 0.91982 0.84062 0.82533 0.82526 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.57 37.16 0.32 -1.65 16 2 C -0.13 -1.44 5.63 -26.73 -0.15 -1.59 16 3 C 0.13 1.58 2.49 -27.88 -0.07 1.51 16 4 H 0.10 1.31 7.06 -51.93 -0.37 0.95 16 5 O -0.35 -5.31 9.23 -39.25 -0.36 -5.67 16 6 C 0.48 8.73 6.43 36.00 0.23 8.96 16 7 O -0.48 -9.77 13.01 -18.75 -0.24 -10.01 16 8 C -0.13 -2.56 6.27 36.00 0.23 -2.33 16 9 S -0.06 -1.45 20.58 -107.50 -2.21 -3.66 16 10 C -0.54 -14.89 9.50 30.94 0.29 -14.60 16 11 H 0.08 1.97 7.80 -52.48 -0.41 1.56 16 12 C 0.08 2.10 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -25.48 13.22 55.49 0.73 -24.75 16 14 Si 0.92 20.93 29.55 -169.99 -5.02 15.91 16 15 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 C -0.04 -0.46 5.01 -104.31 -0.52 -0.98 16 19 C -0.14 -1.52 9.46 -39.44 -0.37 -1.89 16 20 C 0.10 0.96 11.18 -17.55 -0.20 0.76 16 21 N -0.49 -5.42 10.36 -13.25 -0.14 -5.56 16 22 C 0.10 0.93 11.18 -17.55 -0.20 0.73 16 23 C -0.16 -1.56 9.78 -39.44 -0.39 -1.94 16 24 H 0.07 0.91 7.80 -51.93 -0.40 0.51 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.91 6.06 -51.93 -0.31 0.59 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.10 1.87 8.14 -51.92 -0.42 1.45 16 30 H 0.10 1.90 8.14 -51.91 -0.42 1.47 16 31 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.14 1.36 7.85 -52.48 -0.41 0.95 16 33 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 34 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 318.02 15.07 4.79 4.79 Total: -1.00 -32.02 318.02 -7.80 -39.82 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -4.42 Total: 0.16 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -0.92 Total: -11.03 kcal Atomic # 7 Polarization: -30.91 SS G_CDS: 0.60 Total: -30.31 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.61 Total: -15.68 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.21 Total: -3.66 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.02 -7.80 -39.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839005491.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.397 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds