Wall clock time and date at job start Tue Mar 31 2020 05:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99946 * 2 1 4 4 H 1.48498 * 109.47305 * 240.00377 * 3 2 1 5 5 H 1.48500 * 109.47056 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47181 * 120.00124 * 3 2 1 7 7 C 1.37879 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99785 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00200 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.52539 * 299.92110 * 9 7 2 11 11 C 1.53038 * 109.49912 * 179.83678 * 9 7 2 12 12 C 1.53043 * 109.54194 * 178.68586 * 11 9 7 13 13 C 1.52761 * 109.38540 * 61.23410 * 12 11 9 14 14 N 1.46927 * 109.00833 * 305.59932 * 13 12 11 15 15 C 1.34785 * 120.62458 * 233.58214 * 14 13 12 16 16 O 1.21707 * 119.99776 * 183.41020 * 15 14 13 17 17 C 1.46547 * 119.99765 * 3.40577 * 15 14 13 18 18 C 1.36740 * 125.42212 * 134.68907 * 17 15 14 19 19 C 1.37729 * 113.25522 * 179.97438 * 18 17 15 20 20 O 1.36206 * 122.49637 * 180.02562 * 19 18 17 21 21 C 1.34077 * 115.00072 * 359.97438 * 19 18 17 22 22 S 1.70602 * 110.97585 * 0.27068 * 21 19 18 23 23 C 1.46921 * 118.74302 * 53.30275 * 14 13 12 24 24 H 0.97001 * 120.00082 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46111 * 298.70390 * 11 9 7 26 26 H 1.08993 * 109.46165 * 58.67513 * 11 9 7 27 27 H 1.08994 * 109.49917 * 181.31916 * 12 11 9 28 28 H 1.09002 * 109.49201 * 301.38049 * 12 11 9 29 29 H 1.08993 * 109.51222 * 185.71003 * 13 12 11 30 30 H 1.09004 * 109.42777 * 65.42612 * 13 12 11 31 31 H 1.07995 * 123.37526 * 359.96278 * 18 17 15 32 32 H 0.96697 * 114.00570 * 269.99364 * 20 19 18 33 33 H 1.08005 * 124.51709 * 180.02562 * 21 19 18 34 34 H 1.08997 * 109.58664 * 66.43674 * 23 14 13 35 35 H 1.08997 * 109.58690 * 186.85646 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6255 -2.5586 0.8900 11 6 2.2450 -3.6628 -0.0053 12 6 1.4812 -4.9886 0.0278 13 6 0.6018 -5.0983 -1.2165 14 7 -0.2564 -3.9088 -1.3023 15 6 -1.5933 -4.0338 -1.4202 16 8 -2.2877 -3.0431 -1.5528 17 6 -2.2106 -5.3625 -1.3889 18 6 -3.3257 -5.7017 -0.6739 19 6 -3.6896 -7.0212 -0.8274 20 8 -4.7725 -7.5593 -0.2005 21 6 -2.8990 -7.7361 -1.6407 22 16 -1.6322 -6.7759 -2.2601 23 6 0.3696 -2.5807 -1.2508 24 1 -0.4850 0.8400 0.0004 25 1 2.8536 -3.6168 -0.9084 26 1 2.8896 -3.5934 0.8709 27 1 2.1900 -5.8164 0.0480 28 1 0.8540 -5.0249 0.9185 29 1 -0.0182 -5.9920 -1.1464 30 1 1.2335 -5.1577 -2.1028 31 1 -3.8668 -5.0049 -0.0510 32 1 -4.5773 -7.9349 0.6689 33 1 -3.0425 -8.7817 -1.8700 34 1 0.9819 -2.4306 -2.1400 35 1 -0.4035 -1.8138 -1.2034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855255947.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:08 Heat of formation + Delta-G solvation = -44.461112 kcal Electronic energy + Delta-G solvation = -19935.902750 eV Core-core repulsion = 16832.820154 eV Total energy + Delta-G solvation = -3103.082595 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.73967 -38.93713 -36.78137 -35.10149 -33.44278 -31.84681 -30.14895 -29.19670 -25.72878 -25.07867 -23.72380 -21.93552 -21.06380 -19.51830 -18.81235 -17.89401 -17.27316 -16.37138 -15.88909 -15.77107 -14.92707 -14.60736 -14.46358 -13.87512 -13.55325 -13.33719 -13.28638 -12.67690 -12.64428 -12.36999 -12.09515 -11.91033 -11.36387 -11.04692 -10.94951 -10.79382 -10.55471 -10.42695 -10.27129 -9.95138 -9.53497 -9.17624 -9.01002 -8.86370 -8.46526 -8.29661 -7.83763 -6.02326 -4.11488 0.56914 1.34342 1.77074 2.30649 3.27326 3.33133 3.37308 3.38366 3.70237 4.28170 4.41205 4.81406 4.99693 5.22817 5.28124 5.30669 5.43524 5.61567 5.76273 5.91731 6.02832 6.12291 6.15528 6.26073 6.55422 6.61952 6.80568 6.92527 7.08123 7.18241 7.43408 7.58971 7.82084 7.94567 8.13824 8.34313 8.69969 8.92578 9.54530 11.03151 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.029890 B = 0.004709 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.543906 B = 5945.160314 C = 6444.697168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.063 3.937 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.111 4.111 12 C -0.132 4.132 13 C 0.096 3.904 14 N -0.595 5.595 15 C 0.575 3.425 16 O -0.519 6.519 17 C -0.227 4.227 18 C -0.102 4.102 19 C 0.087 3.913 20 O -0.484 6.484 21 C -0.296 4.296 22 S 0.241 5.759 23 C 0.112 3.888 24 H 0.265 0.735 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.156 0.844 32 H 0.387 0.613 33 H 0.170 0.830 34 H 0.046 0.954 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.933 -16.945 -1.937 17.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.077 0.923 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.149 4.149 12 C -0.170 4.170 13 C -0.028 4.028 14 N -0.328 5.328 15 C 0.360 3.640 16 O -0.397 6.397 17 C -0.348 4.348 18 C -0.134 4.134 19 C 0.029 3.971 20 O -0.293 6.293 21 C -0.434 4.434 22 S 0.507 5.493 23 C -0.007 4.007 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.173 0.827 32 H 0.242 0.758 33 H 0.188 0.812 34 H 0.065 0.935 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.564 -16.387 -3.507 16.830 hybrid contribution -0.614 0.754 1.453 1.749 sum -2.179 -15.633 -2.053 15.917 Atomic orbital electron populations 1.69862 1.05785 1.27084 1.49125 1.25055 0.94880 0.99308 0.94739 0.86634 0.79562 0.83083 0.78592 1.20208 1.21238 1.20269 1.21029 0.92897 0.90039 1.52123 0.92319 1.18972 0.92614 0.92416 0.93898 0.95253 1.21638 0.98564 0.93930 1.00744 1.21851 0.98530 0.99313 0.97312 1.21922 0.93762 0.87931 0.99227 1.48451 1.04710 1.09397 1.70213 1.16994 0.82574 0.86212 0.78262 1.90867 1.61728 1.37643 1.49430 1.24726 1.02919 0.99170 1.08006 1.20808 0.95401 0.96305 1.00860 1.16993 0.90348 0.90839 0.98922 1.84940 1.30269 1.78218 1.35900 1.25540 1.03161 1.06240 1.08441 1.83152 1.22351 0.97907 1.45901 1.22401 0.98811 0.80629 0.98875 0.92499 0.93041 0.92835 0.91935 0.92079 0.90884 0.91450 0.82682 0.75836 0.81230 0.93535 0.85769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.49 11.39 55.43 0.63 -24.86 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -13.92 8.56 -34.44 -0.29 -14.21 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.04 0.97 2.25 -91.66 -0.21 0.77 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.14 5.11 -26.69 -0.14 -2.28 16 12 C -0.13 -2.07 6.06 -26.83 -0.16 -2.23 16 13 C 0.10 1.49 5.85 -3.93 -0.02 1.47 16 14 N -0.60 -11.96 2.98 -174.62 -0.52 -12.48 16 15 C 0.57 11.92 7.54 -12.91 -0.10 11.82 16 16 O -0.52 -13.04 16.51 5.18 0.09 -12.95 16 17 C -0.23 -3.70 5.48 -36.78 -0.20 -3.90 16 18 C -0.10 -1.53 10.23 -40.31 -0.41 -1.94 16 19 C 0.09 1.10 6.68 -41.23 -0.28 0.83 16 20 O -0.48 -5.38 13.61 -20.40 -0.28 -5.66 16 21 C -0.30 -3.26 10.89 29.27 0.32 -2.95 16 22 S 0.24 2.83 19.89 -107.50 -2.14 0.69 16 23 C 0.11 2.69 5.39 -3.71 -0.02 2.67 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.97 4.01 -30.27 -0.12 0.85 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.16 2.36 8.06 -52.49 -0.42 1.94 16 32 H 0.39 2.34 9.07 45.56 0.41 2.75 16 33 H 0.17 1.44 8.06 -52.48 -0.42 1.01 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.12 3.49 5.14 -51.93 -0.27 3.22 16 LS Contribution 301.97 15.07 4.55 4.55 Total: -1.00 -32.21 301.97 -7.62 -39.83 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -3.32 Total: 3.18 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -1.61 Total: -8.32 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.11 Total: -37.35 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.19 Total: -18.61 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -2.14 Total: 0.69 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.21 -7.62 -39.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255947.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.632 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds