Wall clock time and date at job start Tue Mar 31 2020 05:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99946 * 2 1 4 4 H 1.48498 * 109.47305 * 240.00377 * 3 2 1 5 5 H 1.48500 * 109.47056 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47181 * 120.00124 * 3 2 1 7 7 C 1.37879 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99785 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00200 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.52539 * 299.92110 * 9 7 2 11 11 C 1.53038 * 109.49912 * 179.83678 * 9 7 2 12 12 C 1.53043 * 109.54194 * 178.68586 * 11 9 7 13 13 C 1.52761 * 109.38540 * 61.23410 * 12 11 9 14 14 N 1.46927 * 109.00833 * 305.59932 * 13 12 11 15 15 C 1.34785 * 120.62458 * 233.58214 * 14 13 12 16 16 O 1.21707 * 119.99776 * 183.41020 * 15 14 13 17 17 C 1.46547 * 119.99765 * 3.40577 * 15 14 13 18 18 C 1.36740 * 125.42212 * 134.68907 * 17 15 14 19 19 C 1.37729 * 113.25522 * 179.97438 * 18 17 15 20 20 O 1.36206 * 122.49637 * 180.02562 * 19 18 17 21 21 C 1.34077 * 115.00072 * 359.97438 * 19 18 17 22 22 S 1.70602 * 110.97585 * 0.27068 * 21 19 18 23 23 C 1.46921 * 118.74302 * 53.30275 * 14 13 12 24 24 H 0.97001 * 120.00082 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46111 * 298.70390 * 11 9 7 26 26 H 1.08993 * 109.46165 * 58.67513 * 11 9 7 27 27 H 1.08994 * 109.49917 * 181.31916 * 12 11 9 28 28 H 1.09002 * 109.49201 * 301.38049 * 12 11 9 29 29 H 1.08993 * 109.51222 * 185.71003 * 13 12 11 30 30 H 1.09004 * 109.42777 * 65.42612 * 13 12 11 31 31 H 1.07995 * 123.37526 * 359.96278 * 18 17 15 32 32 H 0.96697 * 114.00570 * 269.99364 * 20 19 18 33 33 H 1.08005 * 124.51709 * 180.02562 * 21 19 18 34 34 H 1.08997 * 109.58664 * 66.43674 * 23 14 13 35 35 H 1.08997 * 109.58690 * 186.85646 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6255 -2.5586 0.8900 11 6 2.2450 -3.6628 -0.0053 12 6 1.4812 -4.9886 0.0278 13 6 0.6018 -5.0983 -1.2165 14 7 -0.2564 -3.9088 -1.3023 15 6 -1.5933 -4.0338 -1.4202 16 8 -2.2877 -3.0431 -1.5528 17 6 -2.2106 -5.3625 -1.3889 18 6 -3.3257 -5.7017 -0.6739 19 6 -3.6896 -7.0212 -0.8274 20 8 -4.7725 -7.5593 -0.2005 21 6 -2.8990 -7.7361 -1.6407 22 16 -1.6322 -6.7759 -2.2601 23 6 0.3696 -2.5807 -1.2508 24 1 -0.4850 0.8400 0.0004 25 1 2.8536 -3.6168 -0.9084 26 1 2.8896 -3.5934 0.8709 27 1 2.1900 -5.8164 0.0480 28 1 0.8540 -5.0249 0.9185 29 1 -0.0182 -5.9920 -1.1464 30 1 1.2335 -5.1577 -2.1028 31 1 -3.8668 -5.0049 -0.0510 32 1 -4.5773 -7.9349 0.6689 33 1 -3.0425 -8.7817 -1.8700 34 1 0.9819 -2.4306 -2.1400 35 1 -0.4035 -1.8138 -1.2034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855255947.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:07 Heat of formation + Delta-G solvation = -67.979561 kcal Electronic energy + Delta-G solvation = -19936.922586 eV Core-core repulsion = 16832.820154 eV Total energy + Delta-G solvation = -3104.102432 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.19921 -40.02448 -38.40287 -36.14358 -35.33147 -33.53166 -31.79015 -30.43434 -27.35022 -26.74094 -25.07843 -23.53393 -22.34925 -20.98090 -20.06395 -19.31052 -18.35731 -18.15671 -17.37526 -17.05977 -16.59697 -16.10661 -15.95733 -15.30200 -14.91995 -14.70818 -14.52309 -14.34498 -14.16641 -13.68997 -13.59613 -13.40787 -12.85566 -12.70375 -12.39600 -12.29807 -12.23037 -11.86241 -11.76237 -11.63549 -11.26593 -10.98153 -10.82389 -10.53057 -9.98595 -9.50512 -9.25238 -8.11748 -6.29216 -0.51652 0.27583 0.79230 1.25293 1.41551 1.42920 1.51424 1.78366 2.20714 2.42353 3.16436 3.32075 3.67924 3.96951 4.01713 4.13089 4.29582 4.31121 4.54035 4.64531 4.73133 4.75690 4.83442 5.05406 5.07671 5.13011 5.22752 5.25177 5.34156 5.49598 5.59676 5.87141 5.97151 6.30679 6.50136 6.77641 6.83638 7.11955 7.41574 8.91751 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.029890 B = 0.004709 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.543906 B = 5945.160314 C = 6444.697168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.009 3.991 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.267 1.267 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.038 3.962 10 H -0.014 1.014 11 C -0.105 4.105 12 C -0.125 4.125 13 C 0.090 3.910 14 N -0.599 5.599 15 C 0.569 3.431 16 O -0.584 6.584 17 C -0.278 4.278 18 C -0.103 4.103 19 C 0.074 3.926 20 O -0.491 6.491 21 C -0.270 4.270 22 S 0.315 5.685 23 C 0.124 3.876 24 H 0.260 0.740 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.111 0.889 28 H 0.049 0.951 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.136 0.864 32 H 0.409 0.591 33 H 0.208 0.792 34 H 0.044 0.956 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.363 -20.500 -2.679 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.190 4.190 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.217 1.217 6 H -0.192 1.192 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.019 3.981 10 H 0.004 0.996 11 C -0.143 4.143 12 C -0.163 4.163 13 C -0.033 4.033 14 N -0.329 5.329 15 C 0.357 3.643 16 O -0.466 6.466 17 C -0.398 4.398 18 C -0.137 4.137 19 C 0.017 3.983 20 O -0.304 6.304 21 C -0.407 4.407 22 S 0.581 5.419 23 C 0.002 3.998 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.130 0.870 28 H 0.068 0.932 29 H 0.118 0.882 30 H 0.110 0.890 31 H 0.154 0.846 32 H 0.267 0.733 33 H 0.225 0.775 34 H 0.063 0.937 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.056 -20.002 -4.232 20.445 hybrid contribution -1.140 1.742 1.699 2.687 sum -1.084 -18.260 -2.533 18.467 Atomic orbital electron populations 1.70079 1.07563 1.27393 1.50642 1.25915 0.95506 1.03044 0.94531 0.85599 0.78231 0.78615 0.79170 1.19049 1.21674 1.19229 1.21497 0.93404 0.91326 1.51150 0.91639 1.18913 0.93106 0.94114 0.91982 0.99628 1.21528 0.97619 0.93798 1.01368 1.21834 0.98906 0.98704 0.96848 1.22311 0.93823 0.86826 1.00319 1.48447 1.05309 1.09452 1.69731 1.17630 0.82389 0.87548 0.76752 1.90812 1.63086 1.40474 1.52242 1.24268 1.04616 0.99175 1.11749 1.20907 0.94870 0.97570 1.00309 1.16810 0.91371 0.89879 1.00197 1.84904 1.29949 1.78057 1.37441 1.25982 1.01449 1.07573 1.05744 1.82772 1.21507 0.94192 1.43397 1.21835 0.97329 0.82051 0.98565 0.93131 0.91950 0.92583 0.87031 0.93230 0.88174 0.88952 0.84614 0.73338 0.77520 0.93749 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.38 11.39 21.45 0.24 -56.13 16 2 C 0.01 0.53 5.30 84.66 0.45 0.98 16 3 Si 0.96 44.21 29.54 68.60 2.03 46.23 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.54 -29.27 8.56 25.60 0.22 -29.06 16 8 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.04 1.91 2.25 -11.47 -0.03 1.89 16 10 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 11 C -0.11 -3.95 5.11 30.62 0.16 -3.79 16 12 C -0.12 -3.59 6.06 30.53 0.19 -3.40 16 13 C 0.09 2.56 5.85 86.22 0.50 3.06 16 14 N -0.60 -24.60 2.98 -824.60 -2.46 -27.06 16 15 C 0.57 24.73 7.54 86.41 0.65 25.38 16 16 O -0.58 -31.84 16.51 -4.37 -0.07 -31.91 16 17 C -0.28 -8.96 5.48 24.09 0.13 -8.83 16 18 C -0.10 -3.10 10.23 21.80 0.22 -2.87 16 19 C 0.07 1.70 6.68 21.20 0.14 1.84 16 20 O -0.49 -9.66 13.61 -95.90 -1.31 -10.97 16 21 C -0.27 -4.71 10.89 66.87 0.73 -3.98 16 22 S 0.31 6.23 19.89 -56.49 -1.12 5.11 16 23 C 0.12 6.25 5.39 86.36 0.47 6.71 16 24 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 25 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.10 2.31 4.01 -16.17 -0.06 2.24 16 30 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 32 H 0.41 3.82 9.07 -74.06 -0.67 3.14 16 33 H 0.21 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.08 4.66 5.14 -2.39 -0.01 4.65 16 Total: -1.00 -77.15 301.97 1.54 -75.61 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.40 Total: 11.19 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 3.83 Total: -12.07 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -2.21 Total: -83.19 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: -1.38 Total: -42.88 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 6.23 SS G_CDS: -1.12 Total: 5.11 kcal Total: -77.15 1.54 -75.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255947.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.635 kcal (2) G-P(sol) polarization free energy of solvation -77.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds