Wall clock time and date at job start Tue Mar 31 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47204 * 2 1 4 4 N 1.46494 * 109.47233 * 120.00289 * 2 1 3 5 5 C 1.46505 * 119.99893 * 294.96136 * 4 2 1 6 6 C 1.50697 * 109.46986 * 262.14396 * 5 4 2 7 7 H 1.08002 * 119.99942 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00064 * 179.97438 * 6 5 4 9 9 N 1.31508 * 119.99851 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99773 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47226 * 60.00110 * 10 8 6 12 12 H 1.48506 * 109.47279 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47668 * 299.99839 * 10 8 6 14 14 C 1.34776 * 120.00256 * 114.95404 * 4 2 1 15 15 O 1.21603 * 120.00033 * 1.91389 * 14 4 2 16 16 C 1.47289 * 120.00199 * 181.90671 * 14 4 2 17 17 C 1.36705 * 125.13956 * 172.10677 * 16 14 4 18 18 C 1.36648 * 114.78328 * 179.97438 * 17 16 14 19 19 C 1.37032 * 114.68737 * 0.02562 * 18 17 16 20 20 C 1.46286 * 125.17718 * 179.97438 * 19 18 17 21 21 O 1.21351 * 120.00414 * 359.97438 * 20 19 18 22 22 S 1.75829 * 125.13797 * 352.06487 * 16 14 4 23 23 H 1.09001 * 109.47216 * 299.99834 * 1 2 3 24 24 H 1.09003 * 109.46966 * 59.99862 * 1 2 3 25 25 H 1.08998 * 109.47016 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46703 * 240.00070 * 2 1 3 27 27 H 1.08996 * 109.47552 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.47272 * 299.99950 * 3 2 1 29 29 H 1.09001 * 109.46899 * 59.99971 * 3 2 1 30 30 H 1.08994 * 109.47166 * 22.14327 * 5 4 2 31 31 H 1.08999 * 109.46997 * 142.14806 * 5 4 2 32 32 H 0.97001 * 119.99567 * 179.97438 * 9 8 6 33 33 H 1.07991 * 122.60796 * 0.23184 * 17 16 14 34 34 H 1.08001 * 122.65794 * 179.97438 * 18 17 16 35 35 H 1.07998 * 119.99489 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7577 -0.1291 2.5239 6 6 2.9661 0.6418 2.9893 7 1 3.8409 0.7066 2.3592 8 6 2.9549 1.2644 4.2194 9 7 1.8899 1.1851 4.9868 10 14 4.4525 2.2206 4.7959 11 1 4.7356 3.3208 3.8395 12 1 4.1880 2.7908 6.1413 13 1 5.6243 1.3109 4.8649 14 6 2.7073 -1.8427 1.0750 15 8 2.9536 -2.2907 -0.0283 16 6 3.1619 -2.5589 2.2790 17 6 3.7294 -3.8026 2.2875 18 6 4.0735 -4.2669 3.5257 19 6 3.7926 -3.4092 4.5569 20 6 4.0634 -3.6731 5.9701 21 8 4.5760 -4.7210 6.3044 22 16 3.0577 -1.9431 3.9227 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9562 0.8900 30 1 0.8979 0.5389 2.4735 31 1 1.5498 -0.9369 3.2256 32 1 1.8822 1.6228 5.8524 33 1 3.8967 -4.3720 1.3853 34 1 4.5299 -5.2335 3.6796 35 1 3.8071 -2.9352 6.7159 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865081649.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:37 Heat of formation + Delta-G solvation = -39.497982 kcal Electronic energy + Delta-G solvation = -20175.248041 eV Core-core repulsion = 17072.380664 eV Total energy + Delta-G solvation = -3102.867378 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.41488 -38.66387 -36.61589 -35.62064 -33.48766 -31.78551 -29.32120 -27.68209 -26.72223 -25.67877 -23.43332 -22.28829 -21.33349 -19.17708 -17.95427 -17.50651 -16.88352 -16.28524 -15.72846 -14.88319 -14.71377 -14.51539 -14.22388 -13.88680 -13.63321 -13.16157 -12.74965 -12.69100 -12.59998 -12.46992 -11.89980 -11.84060 -11.70926 -11.39624 -11.23215 -10.99495 -10.91939 -10.56853 -10.18625 -10.00549 -9.76274 -9.43190 -9.25316 -8.93538 -8.29625 -7.98975 -7.72406 -6.53094 -4.54751 0.61569 2.25636 2.36961 2.65888 3.07977 3.13340 3.16932 3.31862 3.66065 3.83654 4.08192 4.67561 4.81126 5.14626 5.45088 5.55408 5.68834 5.69816 5.82704 5.93914 5.99201 6.02542 6.23326 6.27137 6.39126 6.45618 6.58174 6.72664 6.80068 6.83315 6.87090 7.27688 7.43803 7.59667 7.70323 8.04254 8.44934 8.77945 9.03974 10.50199 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.013175 B = 0.009171 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.722202 B = 3052.300529 C = 4623.485612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.137 3.863 3 C -0.152 4.152 4 N -0.590 5.590 5 C 0.225 3.775 6 C -0.533 4.533 7 H 0.071 0.929 8 C 0.076 3.924 9 N -0.872 5.872 10 Si 0.890 3.110 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.269 1.269 14 C 0.586 3.414 15 O -0.561 6.561 16 C -0.256 4.256 17 C -0.105 4.105 18 C -0.086 4.086 19 C -0.400 4.400 20 C 0.414 3.586 21 O -0.477 6.477 22 S 0.422 5.578 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.090 0.910 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.274 0.726 33 H 0.139 0.861 34 H 0.131 0.869 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.806 -0.761 -2.023 2.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 C -0.210 4.210 4 N -0.320 5.320 5 C 0.103 3.897 6 C -0.576 4.576 7 H 0.089 0.911 8 C -0.131 4.131 9 N -0.507 5.507 10 Si 0.716 3.284 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.194 1.194 14 C 0.375 3.625 15 O -0.444 6.444 16 C -0.379 4.379 17 C -0.139 4.139 18 C -0.120 4.120 19 C -0.519 4.519 20 C 0.274 3.726 21 O -0.353 6.353 22 S 0.702 5.298 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.157 0.843 34 H 0.149 0.851 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.064 -0.139 -1.489 2.549 hybrid contribution 1.304 -0.584 -0.246 1.450 sum -0.760 -0.723 -1.735 2.028 Atomic orbital electron populations 1.22147 0.95606 1.01843 1.02171 1.20918 0.93525 0.93581 0.88596 1.22058 1.01749 0.95251 1.01968 1.48143 1.52878 1.21977 1.09021 1.19657 0.98788 0.94047 0.77255 1.21544 1.00917 1.32269 1.02868 0.91050 1.24941 0.96580 0.95484 0.96120 1.69890 1.27816 1.41904 1.11125 0.86624 0.82776 0.80682 0.78307 1.19617 1.20614 1.19368 1.17170 0.77768 0.80512 0.87092 1.90683 1.58779 1.68314 1.26575 1.25101 1.12578 1.00804 0.99439 1.20184 1.00578 0.94696 0.98415 1.20305 1.00877 1.00002 0.90823 1.27309 1.16580 1.07518 1.00464 1.23026 0.73170 0.87752 0.88657 1.90480 1.33335 1.27672 1.83841 1.86800 1.45443 1.04119 0.93404 0.91841 0.92021 0.92832 0.89172 0.92424 0.92896 0.90813 0.92330 0.94463 0.91644 0.84307 0.85115 0.88199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.26 37.16 0.34 -1.98 16 2 C 0.14 2.35 3.22 -67.94 -0.22 2.13 16 3 C -0.15 -2.44 8.69 37.15 0.32 -2.12 16 4 N -0.59 -11.65 2.38 -168.79 -0.40 -12.05 16 5 C 0.23 4.65 3.87 -5.19 -0.02 4.63 16 6 C -0.53 -11.75 6.14 -34.44 -0.21 -11.97 16 7 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 8 C 0.08 1.69 5.00 -17.82 -0.09 1.60 16 9 N -0.87 -19.96 13.29 55.43 0.74 -19.22 16 10 Si 0.89 18.07 29.54 -169.99 -5.02 13.05 16 11 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 12 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 13 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 14 C 0.59 12.42 7.58 -12.58 -0.10 12.32 16 15 O -0.56 -12.83 16.17 5.27 0.09 -12.75 16 16 C -0.26 -5.11 6.25 -36.46 -0.23 -5.34 16 17 C -0.11 -1.94 9.89 -40.71 -0.40 -2.34 16 18 C -0.09 -1.53 9.89 -40.59 -0.40 -1.93 16 19 C -0.40 -7.11 6.44 -36.79 -0.24 -7.35 16 20 C 0.41 6.80 11.71 33.96 0.40 7.19 16 21 O -0.48 -8.97 17.63 5.50 0.10 -8.87 16 22 S 0.42 8.05 15.99 -107.50 -1.72 6.33 16 23 H 0.06 0.95 6.93 -51.93 -0.36 0.59 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.09 1.61 6.91 -51.93 -0.36 1.25 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.28 7.10 -51.93 -0.37 0.91 16 30 H 0.06 1.25 6.45 -51.93 -0.33 0.91 16 31 H 0.04 0.81 4.51 -22.35 -0.10 0.71 16 32 H 0.27 6.04 8.31 -40.82 -0.34 5.70 16 33 H 0.14 2.40 8.05 -52.49 -0.42 1.98 16 34 H 0.13 2.13 8.04 -52.49 -0.42 1.71 16 35 H 0.10 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 308.96 15.07 4.66 4.66 Total: -1.00 -25.69 308.96 -6.43 -32.12 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -4.03 Total: 1.89 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -0.84 Total: -5.15 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.34 Total: -31.27 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: 0.18 Total: -21.62 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.02 Total: 13.05 kcal Atomic # 16 Polarization: 8.05 SS G_CDS: -1.72 Total: 6.33 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -25.69 -6.43 -32.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865081649.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.383 kcal (2) G-P(sol) polarization free energy of solvation -25.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds