Wall clock time and date at job start Tue Mar 31 2020 05:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 119.99805 * 2 1 4 4 H 1.48500 * 109.47250 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47222 * 299.99862 * 3 2 1 6 6 H 1.48504 * 109.47282 * 59.99913 * 3 2 1 7 7 C 1.38793 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00298 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99881 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47180 * 180.02562 * 10 9 7 12 12 O 1.21276 * 119.99759 * 4.66030 * 11 10 9 13 13 N 1.34780 * 120.00102 * 184.66916 * 11 10 9 14 14 C 1.46499 * 119.99990 * 356.66117 * 13 11 10 15 15 C 1.50709 * 109.46773 * 90.00651 * 14 13 11 16 16 C 1.41381 * 126.57466 * 269.71387 * 15 14 13 17 17 C 1.34525 * 106.83500 * 179.83543 * 16 15 14 18 18 O 1.34303 * 108.41754 * 0.42591 * 17 16 15 19 19 C 1.34299 * 109.47817 * 359.72798 * 18 17 16 20 20 C 1.46500 * 120.00040 * 176.67030 * 13 11 10 21 21 C 1.53004 * 117.49972 * 17.06746 * 20 13 11 22 22 C 1.52997 * 117.49626 * 308.41011 * 20 13 11 23 23 H 0.96998 * 120.00371 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47517 * 59.99906 * 10 9 7 25 25 H 1.08998 * 109.47446 * 299.99729 * 10 9 7 26 26 H 1.08994 * 109.47332 * 210.00421 * 14 13 11 27 27 H 1.09003 * 109.47266 * 330.01102 * 14 13 11 28 28 H 1.08002 * 126.58600 * 359.97438 * 16 15 14 29 29 H 1.08002 * 125.78460 * 180.11571 * 17 16 15 30 30 H 1.08001 * 125.78802 * 180.02562 * 19 18 17 31 31 H 1.08995 * 115.55063 * 162.73538 * 20 13 11 32 32 H 1.09007 * 117.49751 * 359.97438 * 21 20 13 33 33 H 1.08995 * 117.50123 * 145.02156 * 21 20 13 34 34 H 1.09006 * 117.49469 * 214.98013 * 22 20 13 35 35 H 1.08998 * 117.50146 * 359.97166 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5159 -3.8913 -0.0029 11 6 1.9875 -5.3027 -0.0048 12 8 0.7946 -5.5034 -0.0908 13 7 2.8407 -6.3418 0.0891 14 6 4.2857 -6.1027 0.1194 15 6 4.7364 -5.9295 1.5471 16 6 4.8103 -4.7142 2.2656 17 6 5.2567 -5.0167 3.4980 18 8 5.4647 -6.3421 3.5605 19 6 5.1510 -6.9007 2.3802 20 6 2.3230 -7.7104 0.1608 21 6 0.8730 -7.9408 -0.2697 22 6 1.2515 -8.0062 1.2120 23 1 -0.4850 0.8400 -0.0004 24 1 3.1246 -3.7321 0.8872 25 1 3.1245 -3.7305 -0.8928 26 1 4.8040 -6.9526 -0.3246 27 1 4.5166 -5.2002 -0.4465 28 1 4.5551 -3.7317 1.8967 29 1 5.4245 -4.3125 4.2995 30 1 5.2194 -7.9516 2.1408 31 1 3.0441 -8.4979 -0.0582 32 1 0.3041 -7.0739 -0.6059 33 1 0.6401 -8.8799 -0.7716 34 1 1.2674 -8.9884 1.6844 35 1 0.9320 -7.1826 1.8506 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889097701.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:05 Heat of formation + Delta-G solvation = 27.035707 kcal Electronic energy + Delta-G solvation = -19662.121327 eV Core-core repulsion = 16562.139067 eV Total energy + Delta-G solvation = -3099.982261 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.57696 -39.97998 -36.17823 -35.21367 -32.44097 -32.42204 -29.93063 -28.86113 -26.20764 -25.50372 -22.72909 -22.16552 -21.60156 -20.65534 -19.02073 -17.90959 -17.41317 -16.56077 -16.05146 -15.84791 -15.21482 -14.81689 -14.68532 -14.27717 -14.03124 -13.32742 -13.27556 -13.06586 -12.89277 -12.62209 -12.52640 -11.93939 -11.61861 -11.22979 -11.08664 -11.00749 -10.90705 -10.75895 -10.25326 -9.83317 -9.73037 -9.08189 -8.89263 -8.61561 -8.27224 -8.21888 -6.49898 -6.22668 -3.92846 1.71204 2.43338 2.95228 3.06163 3.12138 3.20352 3.26786 3.30704 3.62157 4.09163 4.19382 4.62773 4.76936 4.81557 4.94558 4.99975 5.12578 5.21680 5.24927 5.32291 5.45984 5.59925 5.68290 5.70174 5.87799 5.88621 5.97920 6.09429 6.18284 6.23908 6.47556 6.54462 6.96863 7.08008 7.55146 7.58790 8.34166 8.60315 9.22774 10.84815 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016537 B = 0.005595 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.779388 B = 5003.041656 C = 6304.980084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.917 3.083 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.533 4.533 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.157 4.157 11 C 0.539 3.461 12 O -0.508 6.508 13 N -0.587 5.587 14 C 0.183 3.817 15 C -0.198 4.198 16 C -0.199 4.199 17 C -0.043 4.043 18 O -0.180 6.180 19 C -0.027 4.027 20 C 0.072 3.928 21 C -0.197 4.197 22 C -0.190 4.190 23 H 0.268 0.732 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.154 0.846 29 H 0.202 0.798 30 H 0.198 0.802 31 H 0.122 0.878 32 H 0.149 0.851 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.692 -14.914 3.006 19.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.307 4.307 11 C 0.328 3.672 12 O -0.383 6.383 13 N -0.320 5.320 14 C 0.060 3.940 15 C -0.201 4.201 16 C -0.218 4.218 17 C -0.110 4.110 18 O -0.075 6.075 19 C -0.096 4.096 20 C -0.033 4.033 21 C -0.234 4.234 22 C -0.229 4.229 23 H 0.078 0.922 24 H 0.112 0.888 25 H 0.106 0.894 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.172 0.828 29 H 0.219 0.781 30 H 0.215 0.785 31 H 0.139 0.861 32 H 0.166 0.834 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.876 -15.241 3.185 18.438 hybrid contribution 1.977 1.389 -0.003 2.416 sum 11.853 -13.852 3.181 18.507 Atomic orbital electron populations 1.70026 1.05948 1.27331 1.46953 1.24983 0.95008 0.98997 0.94569 0.86137 0.79589 0.81966 0.77923 1.19615 1.20557 1.20577 1.22881 0.94860 0.91610 1.58806 0.90961 1.85384 1.05035 0.96341 1.96689 1.23756 1.06599 0.95417 1.04967 1.20366 0.86049 0.86139 0.74666 1.90463 1.15632 1.84328 1.47900 1.47386 1.05884 1.04807 1.73910 1.19796 0.79974 1.03112 0.91129 1.20847 1.06909 0.93479 0.98872 1.21968 1.05523 0.99795 0.94538 1.24038 1.05137 0.81997 0.99840 1.84051 1.67396 1.21397 1.34674 1.23776 1.03841 0.98780 0.83213 1.21566 0.91900 0.84174 1.05633 1.24117 0.97253 1.04956 0.97069 1.23216 1.04088 1.02371 0.93185 0.92243 0.88765 0.89367 0.89562 0.88900 0.82833 0.78093 0.78494 0.86071 0.83424 0.89826 0.89123 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -15.01 9.50 30.94 0.29 -14.72 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.65 20.58 -107.50 -2.21 -3.86 16 10 C -0.16 -3.20 4.70 36.01 0.17 -3.03 16 11 C 0.54 10.26 7.45 -10.98 -0.08 10.18 16 12 O -0.51 -11.20 11.74 5.56 0.07 -11.14 16 13 N -0.59 -8.50 2.82 -167.47 -0.47 -8.97 16 14 C 0.18 2.09 5.71 -5.19 -0.03 2.06 16 15 C -0.20 -2.38 5.71 -104.74 -0.60 -2.98 16 16 C -0.20 -2.62 9.80 -39.70 -0.39 -3.01 16 17 C -0.04 -0.50 12.09 29.42 0.36 -0.14 16 18 O -0.18 -2.12 10.65 5.72 0.06 -2.06 16 19 C -0.03 -0.29 12.01 29.41 0.35 0.07 16 20 C 0.07 0.91 6.62 -67.93 -0.45 0.46 16 21 C -0.20 -2.79 9.64 -26.69 -0.26 -3.04 16 22 C -0.19 -2.57 9.90 -26.70 -0.26 -2.84 16 23 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 24 H 0.09 1.80 4.82 -51.91 -0.25 1.55 16 25 H 0.09 1.68 7.54 -51.92 -0.39 1.28 16 26 H 0.09 0.71 8.03 -51.93 -0.42 0.29 16 27 H 0.09 1.07 6.59 -51.93 -0.34 0.73 16 28 H 0.15 2.16 6.29 -52.49 -0.33 1.83 16 29 H 0.20 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.20 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.12 1.12 8.09 -51.93 -0.42 0.70 16 32 H 0.15 2.66 4.97 -53.35 -0.27 2.40 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.58 7.82 -51.93 -0.41 1.18 16 LS Contribution 311.19 15.07 4.69 4.69 Total: -1.00 -33.92 311.19 -7.21 -41.13 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -4.06 Total: 4.30 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -0.99 Total: -15.00 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.26 Total: -34.27 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.13 Total: -13.19 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.92 -7.21 -41.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889097701.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.165 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds