Wall clock time and date at job start Tue Mar 31 2020 06:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46909 * 90.00072 * 8 6 4 10 10 H 1.48503 * 109.46868 * 209.99959 * 8 6 4 11 11 H 1.48495 * 109.46964 * 330.00013 * 8 6 4 12 12 O 1.45194 * 109.46979 * 120.00212 * 2 1 3 13 13 C 1.34876 * 117.00221 * 270.00248 * 12 2 1 14 14 O 1.21617 * 119.99777 * 359.97438 * 13 12 2 15 15 C 1.46504 * 120.00276 * 180.02562 * 13 12 2 16 16 C 1.36756 * 126.17365 * 359.68498 * 15 13 12 17 17 N 1.30916 * 113.92458 * 179.79081 * 16 15 13 18 18 C 1.29392 * 117.47378 * 0.52309 * 17 16 15 19 19 C 1.50698 * 124.70944 * 179.72575 * 18 17 16 20 20 C 1.53004 * 109.46875 * 89.97852 * 19 18 17 21 21 C 1.52992 * 117.49852 * 243.61848 * 20 19 18 22 22 C 1.52993 * 117.49631 * 174.99704 * 20 19 18 23 23 S 1.70927 * 110.58383 * 359.70857 * 18 17 16 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 27 27 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 28 28 H 1.07995 * 123.03578 * 0.02562 * 16 15 13 29 29 H 1.09003 * 109.46785 * 209.97558 * 19 18 17 30 30 H 1.08999 * 109.47061 * 329.97797 * 19 18 17 31 31 H 1.09001 * 115.54596 * 29.33431 * 20 19 18 32 32 H 1.08997 * 117.49940 * 0.02562 * 21 20 19 33 33 H 1.09005 * 117.49525 * 145.02053 * 21 20 19 34 34 H 1.08998 * 117.50222 * 214.97881 * 22 20 19 35 35 H 1.09003 * 117.50389 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.3429 -2.1614 -4.4120 10 1 2.4866 -0.1410 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 8 2.0140 -0.6845 1.1855 13 6 2.2181 0.0675 2.2864 14 8 1.9977 1.2631 2.2555 15 6 2.7062 -0.5557 3.5191 16 6 2.9890 -1.8820 3.6959 17 7 3.4160 -2.1782 4.8975 18 6 3.5072 -1.2123 5.7536 19 6 3.9720 -1.3695 7.1785 20 6 5.4892 -1.1821 7.2435 21 6 6.3306 -2.3804 7.6871 22 6 6.1429 -1.1877 8.6268 23 16 3.0277 0.2669 5.0440 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.7095 1.1620 -3.4843 28 1 2.8743 -2.6178 2.9138 29 1 3.4862 -0.6205 7.8038 30 1 3.7133 -2.3657 7.5372 31 1 5.9138 -0.5201 6.4888 32 1 5.8035 -3.3024 7.9322 33 1 7.3092 -2.5071 7.2240 34 1 6.9980 -0.5298 8.7820 35 1 5.4922 -1.3245 9.4905 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892689939.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:25 Heat of formation + Delta-G solvation = -27.069345 kcal Electronic energy + Delta-G solvation = -18747.925338 eV Core-core repulsion = 15645.596906 eV Total energy + Delta-G solvation = -3102.328432 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.98400 -39.16404 -37.71307 -35.73805 -33.31966 -32.04511 -29.83776 -28.63257 -25.35468 -24.75083 -22.71899 -22.63613 -21.19890 -20.74162 -19.31328 -18.01605 -17.17807 -16.55406 -15.76160 -15.50935 -15.39212 -14.87219 -14.59530 -14.47231 -13.81090 -13.51814 -13.19935 -12.78340 -12.32095 -12.02310 -11.85347 -11.81500 -11.50404 -11.28078 -11.11058 -10.86713 -10.74336 -10.43116 -10.35027 -10.31160 -10.16014 -9.63646 -9.53822 -9.46338 -8.96276 -8.88638 -8.52366 -6.21481 -4.28704 0.22014 1.08731 1.64509 2.49775 3.23650 3.28916 3.32703 3.38854 3.44989 3.65392 3.89149 4.31950 4.42883 4.57260 4.63940 4.84683 5.10557 5.11876 5.24926 5.31894 5.34899 5.36951 5.60526 5.68639 5.80612 5.88950 6.12895 6.58275 6.84606 6.86032 7.05778 7.53448 7.59298 7.67331 7.86254 8.08315 8.50786 8.81518 9.36664 10.86044 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033789 B = 0.003383 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.477256 B = 8275.132427 C = 8727.954401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.217 3.783 3 H 0.049 0.951 4 C -0.522 4.522 5 H 0.070 0.930 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.913 3.087 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.343 6.343 13 C 0.533 3.467 14 O -0.515 6.515 15 C -0.275 4.275 16 C 0.114 3.886 17 N -0.476 5.476 18 C 0.041 3.959 19 C -0.013 4.013 20 C -0.152 4.152 21 C -0.172 4.172 22 C -0.176 4.176 23 S 0.222 5.778 24 H 0.038 0.962 25 H 0.017 0.983 26 H 0.101 0.899 27 H 0.267 0.733 28 H 0.194 0.806 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.699 -3.936 20.134 21.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.165 3.835 3 H 0.067 0.933 4 C -0.560 4.560 5 H 0.088 0.912 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.740 3.260 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.196 1.196 12 O -0.259 6.259 13 C 0.375 3.625 14 O -0.406 6.406 15 C -0.397 4.397 16 C -0.044 4.044 17 N -0.190 5.190 18 C -0.233 4.233 19 C -0.054 4.054 20 C -0.171 4.171 21 C -0.209 4.209 22 C -0.214 4.214 23 S 0.480 5.520 24 H 0.057 0.943 25 H 0.036 0.964 26 H 0.119 0.881 27 H 0.077 0.923 28 H 0.211 0.789 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.603 -2.928 20.493 21.729 hybrid contribution 0.072 -0.929 -1.743 1.976 sum 6.675 -3.857 18.750 20.273 Atomic orbital electron populations 1.22181 0.97347 1.00282 1.01533 1.20745 0.91521 0.94045 0.77235 0.93342 1.21012 1.32677 1.13591 0.88715 0.91172 1.24889 0.94896 0.95080 0.99078 1.69896 1.36003 1.22466 1.24278 0.86245 0.79330 0.79120 0.81287 1.20302 1.20942 1.19571 1.86584 1.75798 1.42875 1.20686 1.19330 0.74910 0.84811 0.83431 1.90843 1.49273 1.15695 1.84795 1.25374 1.17170 0.98251 0.98927 1.22731 0.94181 0.93821 0.93620 1.66124 1.16742 1.34119 1.01997 1.27394 1.01974 0.92795 1.01143 1.19871 0.93776 1.04431 0.87317 1.22201 0.92804 1.03151 0.98973 1.23047 1.01571 0.93053 1.03261 1.23009 1.03118 1.02011 0.93216 1.83941 1.56626 1.10526 1.00861 0.94276 0.96438 0.88068 0.92322 0.78945 0.88957 0.88381 0.87485 0.88398 0.88717 0.88560 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 9.33 37.16 0.35 -3.62 16 2 C 0.22 5.86 2.57 -27.88 -0.07 5.78 16 3 H 0.05 1.44 7.16 -51.93 -0.37 1.07 16 4 C -0.52 -14.63 8.90 -34.44 -0.31 -14.94 16 5 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.20 11.32 55.43 0.63 -24.57 16 8 Si 0.91 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 O -0.34 -8.28 9.67 -40.97 -0.40 -8.68 16 13 C 0.53 11.72 7.90 34.06 0.27 11.99 16 14 O -0.51 -12.51 16.23 -19.36 -0.31 -12.83 16 15 C -0.27 -4.80 6.51 -36.79 -0.24 -5.04 16 16 C 0.11 1.79 11.20 -18.48 -0.21 1.58 16 17 N -0.48 -6.80 10.50 -11.26 -0.12 -6.92 16 18 C 0.04 0.49 6.58 -13.31 -0.09 0.41 16 19 C -0.01 -0.11 6.07 -27.88 -0.17 -0.28 16 20 C -0.15 -1.22 5.72 -90.63 -0.52 -1.74 16 21 C -0.17 -1.27 10.18 -26.74 -0.27 -1.54 16 22 C -0.18 -1.10 10.25 -26.74 -0.27 -1.38 16 23 S 0.22 2.99 23.00 -107.50 -2.47 0.52 16 24 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.10 2.74 6.07 -51.93 -0.32 2.42 16 27 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.19 2.82 8.06 -52.49 -0.42 2.40 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 0.77 7.88 -51.93 -0.41 0.36 16 31 H 0.11 0.95 8.07 -51.93 -0.42 0.53 16 32 H 0.10 0.68 8.03 -51.93 -0.42 0.27 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 322.32 15.07 4.86 4.86 Total: -1.00 -31.06 322.32 -8.90 -39.96 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -4.44 Total: -1.23 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -1.62 Total: -7.13 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.51 Total: -31.49 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.71 Total: -21.50 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -2.47 Total: 0.52 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.06 -8.90 -39.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892689939.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.889 kcal (2) G-P(sol) polarization free energy of solvation -31.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds