Wall clock time and date at job start Tue Mar 31 2020 06:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81400 * 109.47039 * 2 1 4 4 C 1.81399 * 107.16520 * 295.33455 * 3 2 1 5 5 O 1.42096 * 113.54437 * 61.53761 * 3 2 1 6 6 N 1.49359 * 107.52113 * 179.97438 * 3 2 1 7 7 C 1.31227 * 120.00207 * 180.02562 * 6 3 2 8 8 O 1.22280 * 119.99790 * 359.97438 * 7 6 3 9 9 C 1.48544 * 120.00541 * 179.97438 * 7 6 3 10 10 C 1.39748 * 119.81672 * 359.72160 * 9 7 6 11 11 C 1.36373 * 120.17961 * 179.71847 * 10 9 7 12 12 C 1.41240 * 119.81961 * 0.57621 * 11 10 9 13 13 C 1.40434 * 120.18102 * 179.67584 * 12 11 10 14 14 H 1.08003 * 119.99587 * 205.23784 * 13 12 11 15 15 C 1.46471 * 120.00141 * 25.23345 * 13 12 11 16 16 N 1.29540 * 119.99578 * 12.55653 * 15 13 12 17 17 Si 1.86794 * 120.00399 * 192.55245 * 15 13 12 18 18 H 1.48510 * 109.46989 * 60.00092 * 17 15 13 19 19 H 1.48497 * 109.47652 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47091 * 300.00740 * 17 15 13 21 21 C 1.41251 * 119.64184 * 359.70328 * 12 11 10 22 22 C 1.36381 * 119.81262 * 359.97438 * 21 12 11 23 23 H 1.09000 * 109.46844 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47130 * 300.00144 * 1 2 3 25 25 H 1.09000 * 109.46535 * 60.00683 * 1 2 3 26 26 H 1.09008 * 109.46912 * 119.99803 * 2 1 3 27 27 H 1.08999 * 109.47523 * 239.99341 * 2 1 3 28 28 H 1.09000 * 109.46900 * 66.20359 * 4 3 2 29 29 H 1.09001 * 109.46784 * 186.19717 * 4 3 2 30 30 H 1.08999 * 109.47214 * 306.20004 * 4 3 2 31 31 H 1.07999 * 119.90601 * 359.97438 * 10 9 7 32 32 H 1.08011 * 120.09305 * 180.25890 * 11 10 9 33 33 H 0.97001 * 119.99983 * 179.97438 * 16 15 13 34 34 H 1.08005 * 120.09171 * 179.97438 * 21 12 11 35 35 H 1.08001 * 119.90404 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 1.6139 2.4622 -1.5665 5 8 1.7386 2.4524 1.1452 6 7 3.6274 1.6595 0.0006 7 6 4.3219 2.7729 0.0013 8 8 3.7468 3.8521 0.0009 9 6 5.8064 2.7225 0.0025 10 6 6.4597 1.4871 0.0088 11 6 7.8223 1.4321 0.0042 12 6 8.5735 2.6282 0.0053 13 6 9.9770 2.5805 0.0074 14 1 10.5449 3.4077 0.4070 15 6 10.6708 1.4088 -0.5323 16 7 10.0171 0.5318 -1.2264 17 14 12.4980 1.1790 -0.2198 18 1 12.7439 1.0995 1.2427 19 1 12.9574 -0.0753 -0.8683 20 1 13.2456 2.3308 -0.7854 21 6 7.9054 3.8727 0.0048 22 6 6.5421 3.9105 0.0028 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5137 -0.8901 26 1 1.8934 -0.5138 0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 0.5269 2.5400 -1.5885 29 1 2.0512 3.4567 -1.6552 30 1 1.9507 1.8418 -2.3970 31 1 5.8838 0.5735 0.0133 32 1 8.3258 0.4766 0.0049 33 1 10.4766 -0.2440 -1.5841 34 1 8.4726 4.7919 0.0060 35 1 6.0298 4.8612 0.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925835861.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:26 Heat of formation + Delta-G solvation = -14.838073 kcal Electronic energy + Delta-G solvation = -19286.917071 eV Core-core repulsion = 16185.119027 eV Total energy + Delta-G solvation = -3101.798044 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.85364 -36.87854 -36.15023 -33.77056 -33.61994 -32.67620 -30.03825 -29.33522 -29.17001 -25.70275 -24.56978 -22.13113 -20.60240 -19.82558 -17.94588 -17.43338 -16.54706 -16.19698 -16.12857 -15.42047 -14.82539 -14.78025 -13.76508 -13.57161 -13.55193 -13.44364 -13.07980 -12.92696 -12.76152 -12.69281 -12.05914 -11.97651 -11.78895 -11.69695 -11.30366 -11.15069 -10.89886 -10.84361 -10.40153 -9.93453 -9.43517 -9.38923 -9.14709 -9.11524 -8.85016 -7.44369 -7.33826 -6.94973 -4.38782 -0.58338 2.32125 2.62118 2.96238 2.97347 3.00560 3.24852 3.33539 3.75833 3.79061 4.08697 4.09113 4.37862 4.65874 4.69849 4.78103 4.90002 5.05241 5.18664 5.39685 5.71757 5.82330 6.27946 6.54294 6.61348 6.78884 7.10332 7.25095 7.34737 7.43475 7.69708 8.02447 8.07120 8.12339 8.24431 8.62428 8.79392 9.03657 9.13410 9.89928 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.035269 B = 0.003836 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.717958 B = 7296.921911 C = 7811.616319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.499 4.499 3 S 2.286 3.714 4 C -0.632 4.632 5 O -0.926 6.926 6 N -1.107 6.107 7 C 0.595 3.405 8 O -0.617 6.617 9 C -0.257 4.257 10 C -0.034 4.034 11 C -0.202 4.202 12 C 0.125 3.875 13 C -0.452 4.452 14 H 0.084 0.916 15 C 0.072 3.928 16 N -0.753 5.753 17 Si 0.920 3.080 18 H -0.259 1.259 19 H -0.276 1.276 20 H -0.261 1.261 21 C -0.249 4.249 22 C -0.029 4.029 23 H 0.094 0.906 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.152 0.848 27 H 0.148 0.852 28 H 0.115 0.885 29 H 0.143 0.857 30 H 0.128 0.872 31 H 0.102 0.898 32 H 0.120 0.880 33 H 0.289 0.711 34 H 0.094 0.906 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.011 -7.089 -2.598 15.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.636 4.636 3 S 2.482 3.518 4 C -0.786 4.786 5 O -0.912 6.912 6 N -1.015 6.015 7 C 0.391 3.609 8 O -0.504 6.504 9 C -0.265 4.265 10 C -0.053 4.053 11 C -0.221 4.221 12 C 0.122 3.878 13 C -0.479 4.479 14 H 0.102 0.898 15 C -0.154 4.154 16 N -0.374 5.374 17 Si 0.743 3.257 18 H -0.183 1.183 19 H -0.201 1.201 20 H -0.185 1.185 21 C -0.268 4.268 22 C -0.048 4.048 23 H 0.112 0.888 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.170 0.830 27 H 0.166 0.834 28 H 0.134 0.866 29 H 0.161 0.839 30 H 0.146 0.854 31 H 0.120 0.880 32 H 0.138 0.862 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.227 -6.785 -2.017 15.891 hybrid contribution 0.522 -0.027 -0.548 0.757 sum -13.706 -6.813 -2.565 15.519 Atomic orbital electron populations 1.21798 0.90261 1.05968 1.03961 1.28987 1.05467 1.15362 1.13814 1.13754 0.78714 0.78915 0.80441 1.30140 1.11328 1.15500 1.21672 1.93510 1.85596 1.67239 1.44852 1.70255 1.18435 1.44214 1.68576 1.17903 0.90474 0.81174 0.71388 1.90894 1.72447 1.32591 1.54472 1.18639 0.88605 0.94273 1.24949 1.20582 0.94216 0.95623 0.94856 1.21157 0.92455 0.98657 1.09860 1.17756 0.93124 0.91167 0.85707 1.20884 0.91667 1.00937 1.34376 0.89795 1.27526 1.01519 0.94252 0.92061 1.69163 1.39637 1.08417 1.20202 0.86183 0.80583 0.78640 0.80255 1.18334 1.20071 1.18533 1.20707 0.93202 0.96772 1.16167 1.20364 0.93695 0.95978 0.94771 0.88754 0.90277 0.90868 0.83047 0.83370 0.86595 0.83883 0.85381 0.87982 0.86248 0.89843 0.88785 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 9.88 37.16 0.37 -0.35 16 2 C -0.50 -3.30 6.80 37.16 0.25 -3.05 16 3 S 2.29 30.93 3.89 -107.50 -0.42 30.51 16 4 C -0.63 -6.65 10.33 101.05 1.04 -5.61 16 5 O -0.93 -17.47 17.26 -52.19 -0.90 -18.37 16 6 N -1.11 -21.20 9.26 29.45 0.27 -20.93 16 7 C 0.59 14.44 7.31 -13.56 -0.10 14.34 16 8 O -0.62 -15.89 14.31 -12.29 -0.18 -16.06 16 9 C -0.26 -6.72 5.90 -104.52 -0.62 -7.34 16 10 C -0.03 -0.86 9.50 -39.69 -0.38 -1.24 16 11 C -0.20 -5.41 8.71 -39.11 -0.34 -5.75 16 12 C 0.13 3.43 5.62 -106.79 -0.60 2.83 16 13 C -0.45 -11.85 9.32 -35.44 -0.33 -12.18 16 14 H 0.08 2.10 7.96 -52.48 -0.42 1.68 16 15 C 0.07 1.74 5.40 -15.20 -0.08 1.65 16 16 N -0.75 -18.43 10.84 55.98 0.61 -17.82 16 17 Si 0.92 17.64 29.66 -169.99 -5.04 12.59 16 18 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 19 H -0.28 -5.07 7.11 56.52 0.40 -4.66 16 20 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 21 C -0.25 -6.56 9.76 -39.11 -0.38 -6.94 16 22 C -0.03 -0.75 9.52 -39.69 -0.38 -1.13 16 23 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.19 7.68 -51.93 -0.40 -0.21 16 26 H 0.15 0.94 8.14 -51.92 -0.42 0.51 16 27 H 0.15 0.59 8.14 -51.92 -0.42 0.16 16 28 H 0.12 0.78 7.85 -51.92 -0.41 0.37 16 29 H 0.14 2.01 7.05 -51.92 -0.37 1.64 16 30 H 0.13 0.99 8.14 -51.92 -0.42 0.57 16 31 H 0.10 2.36 7.53 -52.49 -0.40 1.96 16 32 H 0.12 3.19 6.04 -52.48 -0.32 2.87 16 33 H 0.29 6.28 8.27 -40.82 -0.34 5.95 16 34 H 0.09 2.30 8.06 -52.48 -0.42 1.88 16 35 H 0.10 2.43 7.63 -52.49 -0.40 2.03 16 LS Contribution 313.36 15.07 4.72 4.72 Total: -1.00 -37.80 313.36 -6.85 -44.65 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -4.37 Total: 5.45 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: -1.54 Total: -24.74 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.88 Total: -38.75 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -1.08 Total: -34.43 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.04 Total: 12.59 kcal Atomic # 16 Polarization: 30.93 SS G_CDS: -0.42 Total: 30.51 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -37.80 -6.85 -44.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925835861.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.810 kcal (2) G-P(sol) polarization free energy of solvation -37.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds